data_5OXK # _model_server_result.job_id vhO3NqohtWuxoubsZ2LPdA _model_server_result.datetime_utc '2024-11-23 17:54:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":512}' # _entry.id 5OXK # _exptl.entry_id 5OXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OXK _cell.length_a 100.7 _cell.length_b 110.2 _cell.length_c 105.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78N _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL (2R)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C19 78N sing 93 n n C19 C18 78N sing 94 n n C18 O20 78N sing 95 n n C18 C17 78N sing 96 n n C17 O16 78N sing 97 n n O16 C8 78N sing 98 n n C8 O15 78N doub 99 n n C8 C7 78N sing 100 n n C7 C6 78N sing 101 n n C6 C5 78N sing 102 n n C5 C4 78N sing 103 n n C4 C3 78N sing 104 n n C3 C2 78N sing 105 n n C2 C1 78N doub 106 z n C1 C9 78N sing 107 n n C9 C10 78N sing 108 n n C10 C11 78N sing 109 n n C11 C12 78N sing 110 n n C12 C13 78N sing 111 n n C13 C14 78N sing 112 n n C15 C14 78N sing 113 n n O22 H22 78N sing 114 n n C19 H191 78N sing 115 n n C19 H192 78N sing 116 n n C18 H18 78N sing 117 n n O20 H20 78N sing 118 n n C17 H171 78N sing 119 n n C17 H172 78N sing 120 n n C7 H71 78N sing 121 n n C7 H72 78N sing 122 n n C6 H61C 78N sing 123 n n C6 H62C 78N sing 124 n n C5 H51C 78N sing 125 n n C5 H52C 78N sing 126 n n C4 H41C 78N sing 127 n n C4 H42C 78N sing 128 n n C3 H31C 78N sing 129 n n C3 H32C 78N sing 130 n n C2 H2 78N sing 131 n n C1 H1 78N sing 132 n n C9 H91C 78N sing 133 n n C9 H92C 78N sing 134 n n C10 H101 78N sing 135 n n C10 H102 78N sing 136 n n C11 H111 78N sing 137 n n C11 H112 78N sing 138 n n C12 H121 78N sing 139 n n C12 H122 78N sing 140 n n C13 H131 78N sing 141 n n C13 H132 78N sing 142 n n C14 H141 78N sing 143 n n C14 H142 78N sing 144 n n C15 H151 78N sing 145 n n C15 H152 78N sing 146 n n C15 H153 78N sing 147 n n # _atom_sites.entry_id 5OXK _atom_sites.fract_transf_matrix[1][1] 0.00993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 1 PO4 PO4 . C 2 PO4 A 1 502 2 PO4 PO4 . D 2 PO4 A 1 503 3 PO4 PO4 . E 3 1PE A 1 504 4 1PE 1PE . F 4 78N A 1 505 1 78N 78N . G 4 78N A 1 506 2 78N 78N . H 5 78M A 1 507 3 78M 78M . I 4 78N A 1 508 4 78N 78N . J 4 78N A 1 509 5 78N 78N . K 4 78N A 1 510 6 78N 78N . L 4 78N A 1 511 7 78N 78N . M 4 78N A 1 512 8 78N 78N . N 4 78N A 1 513 9 78N 78N . O 4 78N A 1 514 10 78N 78N . P 4 78N A 1 515 11 78N 78N . Q 4 78N A 1 516 12 78N 78N . R 4 78N A 1 517 13 78N 78N . S 6 ALA A 1 518 1 ALA ALA . T 7 GLN A 1 519 2 GLN GLN . U 8 HOH A 1 601 47 HOH HOH . U 8 HOH A 2 602 20 HOH HOH . U 8 HOH A 3 603 39 HOH HOH . U 8 HOH A 4 604 32 HOH HOH . U 8 HOH A 5 605 28 HOH HOH . U 8 HOH A 6 606 29 HOH HOH . U 8 HOH A 7 607 23 HOH HOH . U 8 HOH A 8 608 33 HOH HOH . U 8 HOH A 9 609 5 HOH HOH . U 8 HOH A 10 610 10 HOH HOH . U 8 HOH A 11 611 15 HOH HOH . U 8 HOH A 12 612 6 HOH HOH . U 8 HOH A 13 613 4 HOH HOH . U 8 HOH A 14 614 8 HOH HOH . U 8 HOH A 15 615 21 HOH HOH . U 8 HOH A 16 616 17 HOH HOH . U 8 HOH A 17 617 11 HOH HOH . U 8 HOH A 18 618 22 HOH HOH . U 8 HOH A 19 619 18 HOH HOH . U 8 HOH A 20 620 45 HOH HOH . U 8 HOH A 21 621 12 HOH HOH . U 8 HOH A 22 622 36 HOH HOH . U 8 HOH A 23 623 7 HOH HOH . U 8 HOH A 24 624 9 HOH HOH . U 8 HOH A 25 625 42 HOH HOH . U 8 HOH A 26 626 13 HOH HOH . U 8 HOH A 27 627 14 HOH HOH . U 8 HOH A 28 628 26 HOH HOH . U 8 HOH A 29 629 1 HOH HOH . U 8 HOH A 30 630 41 HOH HOH . U 8 HOH A 31 631 27 HOH HOH . U 8 HOH A 32 632 34 HOH HOH . U 8 HOH A 33 633 3 HOH HOH . U 8 HOH A 34 634 24 HOH HOH . U 8 HOH A 35 635 25 HOH HOH . U 8 HOH A 36 636 19 HOH HOH . U 8 HOH A 37 637 16 HOH HOH . U 8 HOH A 38 638 2 HOH HOH . U 8 HOH A 39 639 35 HOH HOH . U 8 HOH A 40 640 31 HOH HOH . U 8 HOH A 41 641 37 HOH HOH . U 8 HOH A 42 642 30 HOH HOH . U 8 HOH A 43 643 43 HOH HOH . U 8 HOH A 44 644 44 HOH HOH . U 8 HOH A 45 645 46 HOH HOH . U 8 HOH A 46 646 38 HOH HOH . U 8 HOH A 47 647 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 78N . . . M 4 44.389 28.931 11.537 1 92.87 ? O22 78N 512 A 1 HETATM 2 C C19 78N . . . M 4 44.029 28.401 10.241 1 86.8 ? C19 78N 512 A 1 HETATM 3 C C18 78N . . . M 4 42.711 29.048 9.773 1 84.2 ? C18 78N 512 A 1 HETATM 4 O O20 78N . . . M 4 42.567 30.343 10.36 1 85.97 ? O20 78N 512 A 1 HETATM 5 C C17 78N . . . M 4 42.73 29.205 8.266 1 82.24 ? C17 78N 512 A 1 HETATM 6 O O16 78N . . . M 4 42.028 30.388 7.952 1 83.57 ? O16 78N 512 A 1 HETATM 7 C C8 78N . . . M 4 41.79 30.561 6.571 1 87.06 ? C8 78N 512 A 1 HETATM 8 O O15 78N . . . M 4 41.272 29.686 5.95 1 89.23 ? O15 78N 512 A 1 HETATM 9 C C7 78N . . . M 4 42.215 31.861 5.898 1 86.88 ? C7 78N 512 A 1 HETATM 10 C C6 78N . . . M 4 41.821 31.936 4.41 1 82.5 ? C6 78N 512 A 1 HETATM 11 C C5 78N . . . M 4 43.128 31.777 3.552 1 116.55 ? C5 78N 512 A 1 HETATM 12 C C4 78N . . . M 4 43.767 30.448 3.94 1 119.82 ? C4 78N 512 A 1 HETATM 13 C C3 78N . . . M 4 45.139 30.31 3.254 1 123.02 ? C3 78N 512 A 1 HETATM 14 C C2 78N . . . M 4 44.907 30.266 1.758 1 124 ? C2 78N 512 A 1 HETATM 15 C C1 78N . . . M 4 45.632 29.419 0.986 1 128.39 ? C1 78N 512 A 1 HETATM 16 C C9 78N . . . M 4 46.709 28.477 1.604 1 112.83 ? C9 78N 512 A 1 HETATM 17 C C10 78N . . . M 4 47.501 27.864 0.452 1 112.72 ? C10 78N 512 A 1 HETATM 18 C C11 78N . . . M 4 46.509 27.262 -0.549 1 111.78 ? C11 78N 512 A 1 HETATM 19 C C12 78N . . . M 4 47.086 27.39 -1.985 1 90.3 ? C12 78N 512 A 1 HETATM 20 C C13 78N . . . M 4 48.378 26.579 -2.078 1 83.04 ? C13 78N 512 A 1 HETATM 21 C C15 78N . . . M 4 47.778 26.21 -4.492 1 84.79 ? C15 78N 512 A 1 HETATM 22 C C14 78N . . . M 4 48.248 25.525 -3.201 1 82.99 ? C14 78N 512 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #