data_5OXL # _model_server_result.job_id 3A847JiaWXmacN5XAXD-UA _model_server_result.datetime_utc '2024-11-27 16:59:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5OXL # _exptl.entry_id 5OXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OXL _cell.length_a 102.3 _cell.length_b 110.6 _cell.length_c 108.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 217 n n N1 C6 EPE sing 218 n n N1 C9 EPE sing 219 n n C2 C3 EPE sing 220 n n C2 H21 EPE sing 221 n n C2 H22 EPE sing 222 n n C3 N4 EPE sing 223 n n C3 H31 EPE sing 224 n n C3 H32 EPE sing 225 n n N4 C5 EPE sing 226 n n N4 C7 EPE sing 227 n n C5 C6 EPE sing 228 n n C5 H51 EPE sing 229 n n C5 H52 EPE sing 230 n n C6 H61 EPE sing 231 n n C6 H62 EPE sing 232 n n C7 C8 EPE sing 233 n n C7 H71 EPE sing 234 n n C7 H72 EPE sing 235 n n C8 O8 EPE sing 236 n n C8 H81 EPE sing 237 n n C8 H82 EPE sing 238 n n O8 HO8 EPE sing 239 n n C9 C10 EPE sing 240 n n C9 H91 EPE sing 241 n n C9 H92 EPE sing 242 n n C10 S EPE sing 243 n n C10 H101 EPE sing 244 n n C10 H102 EPE sing 245 n n S O1S EPE doub 246 n n S O2S EPE doub 247 n n S O3S EPE sing 248 n n O3S HOS3 EPE sing 249 n n # _atom_sites.entry_id 5OXL _atom_sites.fract_transf_matrix[1][1] 0.009775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 1 PO4 PO4 . C 2 PO4 A 1 502 2 PO4 PO4 . D 3 EPE A 1 503 3 EPE EPE . E 4 1PE A 1 504 4 1PE 1PE . F 4 1PE A 1 505 5 1PE 1PE . G 5 78N A 1 506 1 78N 78N . H 5 78N A 1 507 2 78N 78N . I 6 78M A 1 508 3 78M 78M . J 5 78N A 1 509 4 78N 78N . K 5 78N A 1 510 5 78N 78N . L 5 78N A 1 511 6 78N 78N . M 5 78N A 1 512 7 78N 78N . N 5 78N A 1 513 8 78N 78N . O 5 78N A 1 514 9 78N 78N . P 5 78N A 1 515 10 78N 78N . Q 7 ALA A 1 516 1 ALA ALA . R 8 LEU A 1 517 2 LEU LEU . S 9 HOH A 1 601 31 HOH HOH . S 9 HOH A 2 602 19 HOH HOH . S 9 HOH A 3 603 5 HOH HOH . S 9 HOH A 4 604 32 HOH HOH . S 9 HOH A 5 605 1 HOH HOH . S 9 HOH A 6 606 17 HOH HOH . S 9 HOH A 7 607 21 HOH HOH . S 9 HOH A 8 608 29 HOH HOH . S 9 HOH A 9 609 14 HOH HOH . S 9 HOH A 10 610 10 HOH HOH . S 9 HOH A 11 611 12 HOH HOH . S 9 HOH A 12 612 24 HOH HOH . S 9 HOH A 13 613 9 HOH HOH . S 9 HOH A 14 614 27 HOH HOH . S 9 HOH A 15 615 8 HOH HOH . S 9 HOH A 16 616 28 HOH HOH . S 9 HOH A 17 617 26 HOH HOH . S 9 HOH A 18 618 11 HOH HOH . S 9 HOH A 19 619 15 HOH HOH . S 9 HOH A 20 620 4 HOH HOH . S 9 HOH A 21 621 22 HOH HOH . S 9 HOH A 22 622 13 HOH HOH . S 9 HOH A 23 623 6 HOH HOH . S 9 HOH A 24 624 30 HOH HOH . S 9 HOH A 25 625 7 HOH HOH . S 9 HOH A 26 626 18 HOH HOH . S 9 HOH A 27 627 20 HOH HOH . S 9 HOH A 28 628 3 HOH HOH . S 9 HOH A 29 629 2 HOH HOH . S 9 HOH A 30 630 25 HOH HOH . S 9 HOH A 31 631 16 HOH HOH . S 9 HOH A 32 632 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . D 3 7.658 14.037 23.963 1 97.89 ? N1 EPE 503 A 1 HETATM 2 C C2 EPE . . . D 3 7.185 12.911 24.83 1 98.02 ? C2 EPE 503 A 1 HETATM 3 C C3 EPE . . . D 3 6.825 13.422 26.214 1 97.99 ? C3 EPE 503 A 1 HETATM 4 N N4 EPE . . . D 3 8.071 13.92 26.852 1 97.86 ? N4 EPE 503 A 1 HETATM 5 C C5 EPE . . . D 3 8.619 15.048 26.046 1 97.96 ? C5 EPE 503 A 1 HETATM 6 C C6 EPE . . . D 3 8.905 14.562 24.63 1 97.95 ? C6 EPE 503 A 1 HETATM 7 C C7 EPE . . . D 3 7.69 14.484 28.174 1 97.61 ? C7 EPE 503 A 1 HETATM 8 C C8 EPE . . . D 3 7.055 13.396 29.053 1 97.37 ? C8 EPE 503 A 1 HETATM 9 O O8 EPE . . . D 3 5.915 13.909 29.659 1 97.11 ? O8 EPE 503 A 1 HETATM 10 C C9 EPE . . . D 3 8.092 13.448 22.672 1 97.76 ? C9 EPE 503 A 1 HETATM 11 C C10 EPE . . . D 3 7.497 14.19 21.52 1 97.69 ? C10 EPE 503 A 1 HETATM 12 S S EPE . . . D 3 7.51 13.347 19.959 1 110.11 ? S EPE 503 A 1 HETATM 13 O O1S EPE . . . D 3 6.348 13.875 19.274 1 110.24 ? O1S EPE 503 A 1 HETATM 14 O O2S EPE . . . D 3 8.75 13.757 19.331 1 110.13 ? O2S EPE 503 A 1 HETATM 15 O O3S EPE . . . D 3 7.385 11.975 20.247 1 110.1 ? O3S EPE 503 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #