data_5OXL # _model_server_result.job_id qgRf29MnYEqEFzfo-m3Utw _model_server_result.datetime_utc '2024-11-27 16:10:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 5OXL # _exptl.entry_id 5OXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OXL _cell.length_a 102.3 _cell.length_b 110.6 _cell.length_c 108.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5OXL _atom_sites.fract_transf_matrix[1][1] 0.009775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 1 PO4 PO4 . C 2 PO4 A 1 502 2 PO4 PO4 . D 3 EPE A 1 503 3 EPE EPE . E 4 1PE A 1 504 4 1PE 1PE . F 4 1PE A 1 505 5 1PE 1PE . G 5 78N A 1 506 1 78N 78N . H 5 78N A 1 507 2 78N 78N . I 6 78M A 1 508 3 78M 78M . J 5 78N A 1 509 4 78N 78N . K 5 78N A 1 510 5 78N 78N . L 5 78N A 1 511 6 78N 78N . M 5 78N A 1 512 7 78N 78N . N 5 78N A 1 513 8 78N 78N . O 5 78N A 1 514 9 78N 78N . P 5 78N A 1 515 10 78N 78N . Q 7 ALA A 1 516 1 ALA ALA . R 8 LEU A 1 517 2 LEU LEU . S 9 HOH A 1 601 31 HOH HOH . S 9 HOH A 2 602 19 HOH HOH . S 9 HOH A 3 603 5 HOH HOH . S 9 HOH A 4 604 32 HOH HOH . S 9 HOH A 5 605 1 HOH HOH . S 9 HOH A 6 606 17 HOH HOH . S 9 HOH A 7 607 21 HOH HOH . S 9 HOH A 8 608 29 HOH HOH . S 9 HOH A 9 609 14 HOH HOH . S 9 HOH A 10 610 10 HOH HOH . S 9 HOH A 11 611 12 HOH HOH . S 9 HOH A 12 612 24 HOH HOH . S 9 HOH A 13 613 9 HOH HOH . S 9 HOH A 14 614 27 HOH HOH . S 9 HOH A 15 615 8 HOH HOH . S 9 HOH A 16 616 28 HOH HOH . S 9 HOH A 17 617 26 HOH HOH . S 9 HOH A 18 618 11 HOH HOH . S 9 HOH A 19 619 15 HOH HOH . S 9 HOH A 20 620 4 HOH HOH . S 9 HOH A 21 621 22 HOH HOH . S 9 HOH A 22 622 13 HOH HOH . S 9 HOH A 23 623 6 HOH HOH . S 9 HOH A 24 624 30 HOH HOH . S 9 HOH A 25 625 7 HOH HOH . S 9 HOH A 26 626 18 HOH HOH . S 9 HOH A 27 627 20 HOH HOH . S 9 HOH A 28 628 3 HOH HOH . S 9 HOH A 29 629 2 HOH HOH . S 9 HOH A 30 630 25 HOH HOH . S 9 HOH A 31 631 16 HOH HOH . S 9 HOH A 32 632 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . F 4 11.665 24.24 -16.919 1 86.72 ? OH2 1PE 505 A 1 HETATM 2 C C12 1PE . . . F 4 10.332 24.3 -17.364 1 87.15 ? C12 1PE 505 A 1 HETATM 3 C C22 1PE . . . F 4 10.012 22.909 -17.938 1 87.8 ? C22 1PE 505 A 1 HETATM 4 O OH3 1PE . . . F 4 10.256 21.961 -16.916 1 88.61 ? OH3 1PE 505 A 1 HETATM 5 C C13 1PE . . . F 4 9.98 19.622 -16.433 1 90.08 ? C13 1PE 505 A 1 HETATM 6 C C23 1PE . . . F 4 9.313 20.914 -16.946 1 89.42 ? C23 1PE 505 A 1 HETATM 7 O OH4 1PE . . . F 4 10.417 19.816 -15.107 1 90.34 ? OH4 1PE 505 A 1 HETATM 8 C C14 1PE . . . F 4 11.405 18.906 -13.123 1 90.06 ? C14 1PE 505 A 1 HETATM 9 C C24 1PE . . . F 4 10.809 18.6 -14.505 1 90.23 ? C24 1PE 505 A 1 HETATM 10 O OH5 1PE . . . F 4 12.811 18.779 -13.187 1 89.97 ? OH5 1PE 505 A 1 HETATM 11 C C15 1PE . . . F 4 14.971 19.851 -12.831 1 89.28 ? C15 1PE 505 A 1 HETATM 12 C C25 1PE . . . F 4 13.458 19.844 -12.519 1 89.7 ? C25 1PE 505 A 1 HETATM 13 O OH6 1PE . . . F 4 15.213 20.838 -13.815 1 88.77 ? OH6 1PE 505 A 1 HETATM 14 C C16 1PE . . . F 4 14.437 23.099 -13.955 1 87.94 ? C16 1PE 505 A 1 HETATM 15 C C26 1PE . . . F 4 15.395 22.124 -13.24 1 88.32 ? C26 1PE 505 A 1 HETATM 16 O OH7 1PE . . . F 4 15.221 24.141 -14.457 1 87.69 ? OH7 1PE 505 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #