data_5OXL
#
_model_server_result.job_id            WejhadbYvxZIiuX4JkZeZw 
_model_server_result.datetime_utc      '2024-11-23 22:38:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oxl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":514}' 
#
_entry.id    5OXL 
#
_exptl.entry_id    5OXL 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OXL 
_cell.length_a            102.3 
_cell.length_b            110.6 
_cell.length_c            108.5 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5OXL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL (2R)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C19 78N sing 93 n n 
C19 C18 78N sing 94 n n 
C18 O20 78N sing 95 n n 
C18 C17 78N sing 96 n n 
C17 O16 78N sing 97 n n 
O16 C8 78N sing 98 n n 
C8 O15 78N doub 99 n n 
C8 C7 78N sing 100 n n 
C7 C6 78N sing 101 n n 
C6 C5 78N sing 102 n n 
C5 C4 78N sing 103 n n 
C4 C3 78N sing 104 n n 
C3 C2 78N sing 105 n n 
C2 C1 78N doub 106 z n 
C1 C9 78N sing 107 n n 
C9 C10 78N sing 108 n n 
C10 C11 78N sing 109 n n 
C11 C12 78N sing 110 n n 
C12 C13 78N sing 111 n n 
C13 C14 78N sing 112 n n 
C15 C14 78N sing 113 n n 
O22 H22 78N sing 114 n n 
C19 H191 78N sing 115 n n 
C19 H192 78N sing 116 n n 
C18 H18 78N sing 117 n n 
O20 H20 78N sing 118 n n 
C17 H171 78N sing 119 n n 
C17 H172 78N sing 120 n n 
C7 H71 78N sing 121 n n 
C7 H72 78N sing 122 n n 
C6 H61C 78N sing 123 n n 
C6 H62C 78N sing 124 n n 
C5 H51C 78N sing 125 n n 
C5 H52C 78N sing 126 n n 
C4 H41C 78N sing 127 n n 
C4 H42C 78N sing 128 n n 
C3 H31C 78N sing 129 n n 
C3 H32C 78N sing 130 n n 
C2 H2 78N sing 131 n n 
C1 H1 78N sing 132 n n 
C9 H91C 78N sing 133 n n 
C9 H92C 78N sing 134 n n 
C10 H101 78N sing 135 n n 
C10 H102 78N sing 136 n n 
C11 H111 78N sing 137 n n 
C11 H112 78N sing 138 n n 
C12 H121 78N sing 139 n n 
C12 H122 78N sing 140 n n 
C13 H131 78N sing 141 n n 
C13 H132 78N sing 142 n n 
C14 H141 78N sing 143 n n 
C14 H142 78N sing 144 n n 
C15 H151 78N sing 145 n n 
C15 H152 78N sing 146 n n 
C15 H153 78N sing 147 n n 
#
_atom_sites.entry_id                     5OXL 
_atom_sites.fract_transf_matrix[1][1]    0.009775 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009042 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009217 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 501 1 PO4 PO4 . 
C 2 PO4 A 1 502 2 PO4 PO4 . 
D 3 EPE A 1 503 3 EPE EPE . 
E 4 1PE A 1 504 4 1PE 1PE . 
F 4 1PE A 1 505 5 1PE 1PE . 
G 5 78N A 1 506 1 78N 78N . 
H 5 78N A 1 507 2 78N 78N . 
I 6 78M A 1 508 3 78M 78M . 
J 5 78N A 1 509 4 78N 78N . 
K 5 78N A 1 510 5 78N 78N . 
L 5 78N A 1 511 6 78N 78N . 
M 5 78N A 1 512 7 78N 78N . 
N 5 78N A 1 513 8 78N 78N . 
O 5 78N A 1 514 9 78N 78N . 
P 5 78N A 1 515 10 78N 78N . 
Q 7 ALA A 1 516 1 ALA ALA . 
R 8 LEU A 1 517 2 LEU LEU . 
S 9 HOH A 1 601 31 HOH HOH . 
S 9 HOH A 2 602 19 HOH HOH . 
S 9 HOH A 3 603 5 HOH HOH . 
S 9 HOH A 4 604 32 HOH HOH . 
S 9 HOH A 5 605 1 HOH HOH . 
S 9 HOH A 6 606 17 HOH HOH . 
S 9 HOH A 7 607 21 HOH HOH . 
S 9 HOH A 8 608 29 HOH HOH . 
S 9 HOH A 9 609 14 HOH HOH . 
S 9 HOH A 10 610 10 HOH HOH . 
S 9 HOH A 11 611 12 HOH HOH . 
S 9 HOH A 12 612 24 HOH HOH . 
S 9 HOH A 13 613 9 HOH HOH . 
S 9 HOH A 14 614 27 HOH HOH . 
S 9 HOH A 15 615 8 HOH HOH . 
S 9 HOH A 16 616 28 HOH HOH . 
S 9 HOH A 17 617 26 HOH HOH . 
S 9 HOH A 18 618 11 HOH HOH . 
S 9 HOH A 19 619 15 HOH HOH . 
S 9 HOH A 20 620 4 HOH HOH . 
S 9 HOH A 21 621 22 HOH HOH . 
S 9 HOH A 22 622 13 HOH HOH . 
S 9 HOH A 23 623 6 HOH HOH . 
S 9 HOH A 24 624 30 HOH HOH . 
S 9 HOH A 25 625 7 HOH HOH . 
S 9 HOH A 26 626 18 HOH HOH . 
S 9 HOH A 27 627 20 HOH HOH . 
S 9 HOH A 28 628 3 HOH HOH . 
S 9 HOH A 29 629 2 HOH HOH . 
S 9 HOH A 30 630 25 HOH HOH . 
S 9 HOH A 31 631 16 HOH HOH . 
S 9 HOH A 32 632 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O22 78N . . . O 5 54.753 23.978 -26.419 1 69.8 ? O22 78N 514 A 1 
HETATM 2 C C19 78N . . . O 5 55.155 24.616 -25.185 1 69.13 ? C19 78N 514 A 1 
HETATM 3 C C18 78N . . . O 5 54.199 25.789 -24.892 1 68.85 ? C18 78N 514 A 1 
HETATM 4 O O20 78N . . . O 5 53.057 25.69 -25.744 1 68.66 ? O20 78N 514 A 1 
HETATM 5 C C17 78N . . . O 5 53.76 25.742 -23.439 1 68.65 ? C17 78N 514 A 1 
HETATM 6 O O16 78N . . . O 5 53.369 27.036 -23.028 1 68.75 ? O16 78N 514 A 1 
HETATM 7 C C8 78N . . . O 5 53.612 27.324 -21.664 1 69.11 ? C8 78N 514 A 1 
HETATM 8 O O15 78N . . . O 5 53.846 26.442 -20.891 1 69.34 ? O15 78N 514 A 1 
HETATM 9 C C7 78N . . . O 5 53.576 28.769 -21.192 1 69.06 ? C7 78N 514 A 1 
HETATM 10 C C6 78N . . . O 5 53.633 28.843 -19.655 1 68.91 ? C6 78N 514 A 1 
HETATM 11 C C5 78N . . . O 5 53.684 30.362 -19.247 1 57.9 ? C5 78N 514 A 1 
HETATM 12 C C4 78N . . . O 5 54.093 30.491 -17.782 1 58 ? C4 78N 514 A 1 
HETATM 13 C C3 78N . . . O 5 52.859 30.247 -16.89 1 58.09 ? C3 78N 514 A 1 
HETATM 14 C C2 78N . . . O 5 53.094 29.012 -16.043 1 58.25 ? C2 78N 514 A 1 
HETATM 15 C C1 78N . . . O 5 52.578 28.968 -14.789 1 58.43 ? C1 78N 514 A 1 
HETATM 16 C C9 78N . . . O 5 51.766 30.194 -14.277 1 79.2 ? C9 78N 514 A 1 
HETATM 17 C C10 78N . . . O 5 51.567 30.107 -12.767 1 79.3 ? C10 78N 514 A 1 
HETATM 18 C C11 78N . . . O 5 51.833 31.486 -12.157 1 79.43 ? C11 78N 514 A 1 
HETATM 19 C C12 78N . . . O 5 51.002 31.639 -10.852 1 69.11 ? C12 78N 514 A 1 
HETATM 20 C C13 78N . . . O 5 51.175 33.043 -10.276 1 69.09 ? C13 78N 514 A 1 
HETATM 21 C C15 78N . . . O 5 50.499 32.377 -7.95 1 69.45 ? C15 78N 514 A 1 
HETATM 22 C C14 78N . . . O 5 50.129 33.245 -9.16 1 69.27 ? C14 78N 514 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#