data_5OXL # _model_server_result.job_id O75icrJLVAvtdqOWl9LtGA _model_server_result.datetime_utc '2024-11-23 22:29:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":515}' # _entry.id 5OXL # _exptl.entry_id 5OXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OXL _cell.length_a 102.3 _cell.length_b 110.6 _cell.length_c 108.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78N _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL (2R)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C19 78N sing 93 n n C19 C18 78N sing 94 n n C18 O20 78N sing 95 n n C18 C17 78N sing 96 n n C17 O16 78N sing 97 n n O16 C8 78N sing 98 n n C8 O15 78N doub 99 n n C8 C7 78N sing 100 n n C7 C6 78N sing 101 n n C6 C5 78N sing 102 n n C5 C4 78N sing 103 n n C4 C3 78N sing 104 n n C3 C2 78N sing 105 n n C2 C1 78N doub 106 z n C1 C9 78N sing 107 n n C9 C10 78N sing 108 n n C10 C11 78N sing 109 n n C11 C12 78N sing 110 n n C12 C13 78N sing 111 n n C13 C14 78N sing 112 n n C15 C14 78N sing 113 n n O22 H22 78N sing 114 n n C19 H191 78N sing 115 n n C19 H192 78N sing 116 n n C18 H18 78N sing 117 n n O20 H20 78N sing 118 n n C17 H171 78N sing 119 n n C17 H172 78N sing 120 n n C7 H71 78N sing 121 n n C7 H72 78N sing 122 n n C6 H61C 78N sing 123 n n C6 H62C 78N sing 124 n n C5 H51C 78N sing 125 n n C5 H52C 78N sing 126 n n C4 H41C 78N sing 127 n n C4 H42C 78N sing 128 n n C3 H31C 78N sing 129 n n C3 H32C 78N sing 130 n n C2 H2 78N sing 131 n n C1 H1 78N sing 132 n n C9 H91C 78N sing 133 n n C9 H92C 78N sing 134 n n C10 H101 78N sing 135 n n C10 H102 78N sing 136 n n C11 H111 78N sing 137 n n C11 H112 78N sing 138 n n C12 H121 78N sing 139 n n C12 H122 78N sing 140 n n C13 H131 78N sing 141 n n C13 H132 78N sing 142 n n C14 H141 78N sing 143 n n C14 H142 78N sing 144 n n C15 H151 78N sing 145 n n C15 H152 78N sing 146 n n C15 H153 78N sing 147 n n # _atom_sites.entry_id 5OXL _atom_sites.fract_transf_matrix[1][1] 0.009775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 1 PO4 PO4 . C 2 PO4 A 1 502 2 PO4 PO4 . D 3 EPE A 1 503 3 EPE EPE . E 4 1PE A 1 504 4 1PE 1PE . F 4 1PE A 1 505 5 1PE 1PE . G 5 78N A 1 506 1 78N 78N . H 5 78N A 1 507 2 78N 78N . I 6 78M A 1 508 3 78M 78M . J 5 78N A 1 509 4 78N 78N . K 5 78N A 1 510 5 78N 78N . L 5 78N A 1 511 6 78N 78N . M 5 78N A 1 512 7 78N 78N . N 5 78N A 1 513 8 78N 78N . O 5 78N A 1 514 9 78N 78N . P 5 78N A 1 515 10 78N 78N . Q 7 ALA A 1 516 1 ALA ALA . R 8 LEU A 1 517 2 LEU LEU . S 9 HOH A 1 601 31 HOH HOH . S 9 HOH A 2 602 19 HOH HOH . S 9 HOH A 3 603 5 HOH HOH . S 9 HOH A 4 604 32 HOH HOH . S 9 HOH A 5 605 1 HOH HOH . S 9 HOH A 6 606 17 HOH HOH . S 9 HOH A 7 607 21 HOH HOH . S 9 HOH A 8 608 29 HOH HOH . S 9 HOH A 9 609 14 HOH HOH . S 9 HOH A 10 610 10 HOH HOH . S 9 HOH A 11 611 12 HOH HOH . S 9 HOH A 12 612 24 HOH HOH . S 9 HOH A 13 613 9 HOH HOH . S 9 HOH A 14 614 27 HOH HOH . S 9 HOH A 15 615 8 HOH HOH . S 9 HOH A 16 616 28 HOH HOH . S 9 HOH A 17 617 26 HOH HOH . S 9 HOH A 18 618 11 HOH HOH . S 9 HOH A 19 619 15 HOH HOH . S 9 HOH A 20 620 4 HOH HOH . S 9 HOH A 21 621 22 HOH HOH . S 9 HOH A 22 622 13 HOH HOH . S 9 HOH A 23 623 6 HOH HOH . S 9 HOH A 24 624 30 HOH HOH . S 9 HOH A 25 625 7 HOH HOH . S 9 HOH A 26 626 18 HOH HOH . S 9 HOH A 27 627 20 HOH HOH . S 9 HOH A 28 628 3 HOH HOH . S 9 HOH A 29 629 2 HOH HOH . S 9 HOH A 30 630 25 HOH HOH . S 9 HOH A 31 631 16 HOH HOH . S 9 HOH A 32 632 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 78N . . . P 5 14.376 9.697 -14.149 1 78.68 ? O22 78N 515 A 1 HETATM 2 C C19 78N . . . P 5 15.156 8.843 -13.282 1 78.79 ? C19 78N 515 A 1 HETATM 3 C C18 78N . . . P 5 15.089 7.405 -13.824 1 78.84 ? C18 78N 515 A 1 HETATM 4 O O20 78N . . . P 5 14.662 7.459 -15.184 1 78.97 ? O20 78N 515 A 1 HETATM 5 C C17 78N . . . P 5 16.461 6.761 -13.742 1 78.66 ? C17 78N 515 A 1 HETATM 6 O O16 78N . . . P 5 16.878 6.664 -12.396 1 78.41 ? O16 78N 515 A 1 HETATM 7 C C8 78N . . . P 5 17.079 5.335 -11.949 1 78.27 ? C8 78N 515 A 1 HETATM 8 O O15 78N . . . P 5 16.179 4.747 -11.428 1 78.25 ? O15 78N 515 A 1 HETATM 9 C C7 78N . . . P 5 18.43 4.653 -12.123 1 78.32 ? C7 78N 515 A 1 HETATM 10 C C6 78N . . . P 5 18.619 3.61 -11.003 1 78.3 ? C6 78N 515 A 1 HETATM 11 C C5 78N . . . P 5 20.024 2.901 -11.117 1 62.09 ? C5 78N 515 A 1 HETATM 12 C C4 78N . . . P 5 20.26 2.108 -9.829 1 62.21 ? C4 78N 515 A 1 HETATM 13 C C3 78N . . . P 5 21.598 1.332 -9.865 1 62.25 ? C3 78N 515 A 1 HETATM 14 C C2 78N . . . P 5 21.739 0.581 -8.551 1 62.27 ? C2 78N 515 A 1 HETATM 15 C C1 78N . . . P 5 22.924 0.06 -8.131 1 62.44 ? C1 78N 515 A 1 HETATM 16 C C9 78N . . . P 5 24.238 0.19 -8.967 1 64.76 ? C9 78N 515 A 1 HETATM 17 C C10 78N . . . P 5 25.276 1.025 -8.213 1 64.59 ? C10 78N 515 A 1 HETATM 18 C C11 78N . . . P 5 26.299 0.131 -7.504 1 64.35 ? C11 78N 515 A 1 HETATM 19 C C12 78N . . . P 5 25.651 -0.52 -6.249 1 74.86 ? C12 78N 515 A 1 HETATM 20 C C13 78N . . . P 5 25.61 0.459 -5.077 1 74.72 ? C13 78N 515 A 1 HETATM 21 C C15 78N . . . P 5 24.382 -0.203 -2.968 1 74.23 ? C15 78N 515 A 1 HETATM 22 C C14 78N . . . P 5 24.232 0.363 -4.385 1 74.53 ? C14 78N 515 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 22 #