data_5OXM
#
_model_server_result.job_id            eMA8-NVh04YHVrP2wMBJ_Q 
_model_server_result.datetime_utc      '2024-11-05 06:42:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oxm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":506}' 
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_entry.id    5OXM 
#
_exptl.entry_id    5OXM 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OXM 
_cell.length_a            100.6 
_cell.length_b            109 
_cell.length_c            107 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5OXM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL (2R)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C19 78N sing 56 n n 
C19 C18 78N sing 57 n n 
C18 O20 78N sing 58 n n 
C18 C17 78N sing 59 n n 
C17 O16 78N sing 60 n n 
O16 C8 78N sing 61 n n 
C8 O15 78N doub 62 n n 
C8 C7 78N sing 63 n n 
C7 C6 78N sing 64 n n 
C6 C5 78N sing 65 n n 
C5 C4 78N sing 66 n n 
C4 C3 78N sing 67 n n 
C3 C2 78N sing 68 n n 
C2 C1 78N doub 69 z n 
C1 C9 78N sing 70 n n 
C9 C10 78N sing 71 n n 
C10 C11 78N sing 72 n n 
C11 C12 78N sing 73 n n 
C12 C13 78N sing 74 n n 
C13 C14 78N sing 75 n n 
C15 C14 78N sing 76 n n 
O22 H22 78N sing 77 n n 
C19 H191 78N sing 78 n n 
C19 H192 78N sing 79 n n 
C18 H18 78N sing 80 n n 
O20 H20 78N sing 81 n n 
C17 H171 78N sing 82 n n 
C17 H172 78N sing 83 n n 
C7 H71 78N sing 84 n n 
C7 H72 78N sing 85 n n 
C6 H61C 78N sing 86 n n 
C6 H62C 78N sing 87 n n 
C5 H51C 78N sing 88 n n 
C5 H52C 78N sing 89 n n 
C4 H41C 78N sing 90 n n 
C4 H42C 78N sing 91 n n 
C3 H31C 78N sing 92 n n 
C3 H32C 78N sing 93 n n 
C2 H2 78N sing 94 n n 
C1 H1 78N sing 95 n n 
C9 H91C 78N sing 96 n n 
C9 H92C 78N sing 97 n n 
C10 H101 78N sing 98 n n 
C10 H102 78N sing 99 n n 
C11 H111 78N sing 100 n n 
C11 H112 78N sing 101 n n 
C12 H121 78N sing 102 n n 
C12 H122 78N sing 103 n n 
C13 H131 78N sing 104 n n 
C13 H132 78N sing 105 n n 
C14 H141 78N sing 106 n n 
C14 H142 78N sing 107 n n 
C15 H151 78N sing 108 n n 
C15 H152 78N sing 109 n n 
C15 H153 78N sing 110 n n 
#
_atom_sites.entry_id                     5OXM 
_atom_sites.fract_transf_matrix[1][1]    0.00994 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009174 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009346 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 501 1 PO4 PO4 . 
C 2 PO4 A 1 502 2 PO4 PO4 . 
D 2 PO4 A 1 503 3 PO4 PO4 . 
E 2 PO4 A 1 504 4 PO4 PO4 . 
F 3 78N A 1 505 1 78N 78N . 
G 3 78N A 1 506 2 78N 78N . 
H 4 78M A 1 507 3 78M 78M . 
I 3 78N A 1 508 4 78N 78N . 
J 3 78N A 1 509 5 78N 78N . 
K 3 78N A 1 510 6 78N 78N . 
L 3 78N A 1 511 7 78N 78N . 
M 3 78N A 1 512 8 78N 78N . 
N 3 78N A 1 513 9 78N 78N . 
O 3 78N A 1 514 10 78N 78N . 
P 3 78N A 1 515 11 78N 78N . 
Q 4 78M A 1 516 12 78M 78M . 
R 3 78N A 1 517 13 78N 78N . 
S 3 78N A 1 518 14 78N 78N . 
T 3 78N A 1 519 15 78N 78N . 
U 3 78N A 1 520 16 78N 78N . 
V 5 ASP A 1 521 1 ASP ASP . 
W 6 GLU A 1 522 2 GLU GLU . 
X 7 HOH A 1 601 2 HOH HOH . 
X 7 HOH A 2 602 10 HOH HOH . 
X 7 HOH A 3 603 12 HOH HOH . 
X 7 HOH A 4 604 18 HOH HOH . 
X 7 HOH A 5 605 28 HOH HOH . 
X 7 HOH A 6 606 27 HOH HOH . 
X 7 HOH A 7 607 1 HOH HOH . 
X 7 HOH A 8 608 15 HOH HOH . 
X 7 HOH A 9 609 8 HOH HOH . 
X 7 HOH A 10 610 4 HOH HOH . 
X 7 HOH A 11 611 13 HOH HOH . 
X 7 HOH A 12 612 17 HOH HOH . 
X 7 HOH A 13 613 5 HOH HOH . 
X 7 HOH A 14 614 6 HOH HOH . 
X 7 HOH A 15 615 25 HOH HOH . 
X 7 HOH A 16 616 7 HOH HOH . 
X 7 HOH A 17 617 26 HOH HOH . 
X 7 HOH A 18 618 23 HOH HOH . 
X 7 HOH A 19 619 24 HOH HOH . 
X 7 HOH A 20 620 11 HOH HOH . 
X 7 HOH A 21 621 3 HOH HOH . 
X 7 HOH A 22 622 29 HOH HOH . 
X 7 HOH A 23 623 22 HOH HOH . 
X 7 HOH A 24 624 16 HOH HOH . 
X 7 HOH A 25 625 21 HOH HOH . 
X 7 HOH A 26 626 19 HOH HOH . 
X 7 HOH A 27 627 9 HOH HOH . 
X 7 HOH A 28 628 20 HOH HOH . 
X 7 HOH A 29 629 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O22 78N . . . G 3 1.64 14.131 18.42 1 81.54 ? O22 78N 506 A 1 
HETATM 2 C C19 78N . . . G 3 2.243 15.366 17.955 1 71.42 ? C19 78N 506 A 1 
HETATM 3 C C18 78N . . . G 3 2.426 15.344 16.425 1 72.81 ? C18 78N 506 A 1 
HETATM 4 O O20 78N . . . G 3 1.598 14.326 15.864 1 84.73 ? O20 78N 506 A 1 
HETATM 5 C C17 78N . . . G 3 2.029 16.684 15.83 1 73.66 ? C17 78N 506 A 1 
HETATM 6 O O16 78N . . . G 3 1.589 16.462 14.505 1 76.18 ? O16 78N 506 A 1 
HETATM 7 C C8 78N . . . G 3 1.676 17.578 13.638 1 77.42 ? C8 78N 506 A 1 
HETATM 8 O O15 78N . . . G 3 1.199 18.627 13.941 1 87.78 ? O15 78N 506 A 1 
HETATM 9 C C7 78N . . . G 3 2.365 17.482 12.293 1 64.66 ? C7 78N 506 A 1 
HETATM 10 C C6 78N . . . G 3 2.106 18.819 11.576 1 56.04 ? C6 78N 506 A 1 
HETATM 11 C C5 78N . . . G 3 2.3 18.657 10.028 1 90.4 ? C5 78N 506 A 1 
HETATM 12 C C4 78N . . . G 3 0.932 18.46 9.382 1 96.83 ? C4 78N 506 A 1 
HETATM 13 C C3 78N . . . G 3 1.097 17.607 8.104 1 101.92 ? C3 78N 506 A 1 
HETATM 14 C C2 78N . . . G 3 0.22 18.196 7.012 1 99.37 ? C2 78N 506 A 1 
HETATM 15 C C1 78N . . . G 3 0.21 17.665 5.76 1 94.75 ? C1 78N 506 A 1 
HETATM 16 C C9 78N . . . G 3 1.091 16.432 5.394 1 110.85 ? C9 78N 506 A 1 
HETATM 17 C C10 78N . . . G 3 0.91 16.125 3.907 1 111.01 ? C10 78N 506 A 1 
HETATM 18 C C11 78N . . . G 3 0.962 14.613 3.656 1 109.81 ? C11 78N 506 A 1 
HETATM 19 C C12 78N . . . G 3 -0.341 14.171 2.929 1 78.73 ? C12 78N 506 A 1 
HETATM 20 C C13 78N . . . G 3 -0.109 12.866 2.167 1 78.61 ? C13 78N 506 A 1 
HETATM 21 C C15 78N . . . G 3 0.785 11.873 0.03 1 88.92 ? C15 78N 506 A 1 
HETATM 22 C C14 78N . . . G 3 0.624 13.167 0.841 1 84.49 ? C14 78N 506 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#