data_5OXM
#
_model_server_result.job_id            nq5jr0hIgDcRwA7VfV1-pg 
_model_server_result.datetime_utc      '2025-03-05 20:03:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oxm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":507}' 
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_entry.id    5OXM 
#
_exptl.entry_id    5OXM 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OXM 
_cell.length_a            100.6 
_cell.length_b            109 
_cell.length_c            107 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OXM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 Q N N 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C20 78M sing 1 n n 
C20 C18 78M sing 2 n n 
C18 O19 78M sing 3 n n 
C18 C17 78M sing 4 n n 
C17 O2 78M sing 5 n n 
O2 C1 78M sing 6 n n 
C1 O1 78M doub 7 n n 
C1 C2 78M sing 8 n n 
C2 C3 78M sing 9 n n 
C3 C4 78M sing 10 n n 
C4 C5 78M sing 11 n n 
C5 C6 78M sing 12 n n 
C6 C7 78M sing 13 n n 
C7 C8 78M doub 14 z n 
C8 C9 78M sing 15 n n 
C9 C10 78M sing 16 n n 
C10 C11 78M sing 17 n n 
C11 C12 78M sing 18 n n 
C12 C13 78M sing 19 n n 
C15 C14 78M sing 20 n n 
C13 C14 78M sing 21 n n 
O21 H21 78M sing 22 n n 
C20 H201 78M sing 23 n n 
C20 H202 78M sing 24 n n 
C18 H18 78M sing 25 n n 
O19 H19 78M sing 26 n n 
C17 H171 78M sing 27 n n 
C17 H172 78M sing 28 n n 
C2 H21C 78M sing 29 n n 
C2 H22C 78M sing 30 n n 
C3 H31C 78M sing 31 n n 
C3 H32C 78M sing 32 n n 
C4 H41C 78M sing 33 n n 
C4 H42C 78M sing 34 n n 
C5 H51C 78M sing 35 n n 
C5 H52C 78M sing 36 n n 
C6 H61C 78M sing 37 n n 
C6 H62C 78M sing 38 n n 
C7 H7 78M sing 39 n n 
C8 H8 78M sing 40 n n 
C9 H91C 78M sing 41 n n 
C9 H92C 78M sing 42 n n 
C10 H101 78M sing 43 n n 
C10 H102 78M sing 44 n n 
C11 H111 78M sing 45 n n 
C11 H112 78M sing 46 n n 
C12 H121 78M sing 47 n n 
C12 H122 78M sing 48 n n 
C13 H131 78M sing 49 n n 
C13 H132 78M sing 50 n n 
C15 H151 78M sing 51 n n 
C15 H152 78M sing 52 n n 
C15 H153 78M sing 53 n n 
C14 H141 78M sing 54 n n 
C14 H142 78M sing 55 n n 
#
_atom_sites.entry_id                     5OXM 
_atom_sites.fract_transf_matrix[1][1]    0.00994 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009174 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009346 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 501 1 PO4 PO4 . 
C 2 PO4 A 1 502 2 PO4 PO4 . 
D 2 PO4 A 1 503 3 PO4 PO4 . 
E 2 PO4 A 1 504 4 PO4 PO4 . 
F 3 78N A 1 505 1 78N 78N . 
G 3 78N A 1 506 2 78N 78N . 
H 4 78M A 1 507 3 78M 78M . 
I 3 78N A 1 508 4 78N 78N . 
J 3 78N A 1 509 5 78N 78N . 
K 3 78N A 1 510 6 78N 78N . 
L 3 78N A 1 511 7 78N 78N . 
M 3 78N A 1 512 8 78N 78N . 
N 3 78N A 1 513 9 78N 78N . 
O 3 78N A 1 514 10 78N 78N . 
P 3 78N A 1 515 11 78N 78N . 
Q 4 78M A 1 516 12 78M 78M . 
R 3 78N A 1 517 13 78N 78N . 
S 3 78N A 1 518 14 78N 78N . 
T 3 78N A 1 519 15 78N 78N . 
U 3 78N A 1 520 16 78N 78N . 
V 5 ASP A 1 521 1 ASP ASP . 
W 6 GLU A 1 522 2 GLU GLU . 
X 7 HOH A 1 601 2 HOH HOH . 
X 7 HOH A 2 602 10 HOH HOH . 
X 7 HOH A 3 603 12 HOH HOH . 
X 7 HOH A 4 604 18 HOH HOH . 
X 7 HOH A 5 605 28 HOH HOH . 
X 7 HOH A 6 606 27 HOH HOH . 
X 7 HOH A 7 607 1 HOH HOH . 
X 7 HOH A 8 608 15 HOH HOH . 
X 7 HOH A 9 609 8 HOH HOH . 
X 7 HOH A 10 610 4 HOH HOH . 
X 7 HOH A 11 611 13 HOH HOH . 
X 7 HOH A 12 612 17 HOH HOH . 
X 7 HOH A 13 613 5 HOH HOH . 
X 7 HOH A 14 614 6 HOH HOH . 
X 7 HOH A 15 615 25 HOH HOH . 
X 7 HOH A 16 616 7 HOH HOH . 
X 7 HOH A 17 617 26 HOH HOH . 
X 7 HOH A 18 618 23 HOH HOH . 
X 7 HOH A 19 619 24 HOH HOH . 
X 7 HOH A 20 620 11 HOH HOH . 
X 7 HOH A 21 621 3 HOH HOH . 
X 7 HOH A 22 622 29 HOH HOH . 
X 7 HOH A 23 623 22 HOH HOH . 
X 7 HOH A 24 624 16 HOH HOH . 
X 7 HOH A 25 625 21 HOH HOH . 
X 7 HOH A 26 626 19 HOH HOH . 
X 7 HOH A 27 627 9 HOH HOH . 
X 7 HOH A 28 628 20 HOH HOH . 
X 7 HOH A 29 629 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 78M . . . H 4 7.764 14.025 20.035 1 83.73 ? O21 78M 507 A 1 
HETATM 2 C C20 78M . . . H 4 6.844 13.481 19.058 1 85.25 ? C20 78M 507 A 1 
HETATM 3 C C18 78M . . . H 4 6.162 12.235 19.634 1 89.8 ? C18 78M 507 A 1 
HETATM 4 O O19 78M . . . H 4 7.116 11.357 20.107 1 91.26 ? O19 78M 507 A 1 
HETATM 5 C C17 78M . . . H 4 5.339 11.52 18.582 1 95.31 ? C17 78M 507 A 1 
HETATM 6 O O2 78M . . . H 4 5.143 12.373 17.478 1 95.85 ? O2 78M 507 A 1 
HETATM 7 C C1 78M . . . H 4 5.275 11.743 16.213 1 92.31 ? C1 78M 507 A 1 
HETATM 8 O O1 78M . . . H 4 5.783 10.626 16.136 1 102.13 ? O1 78M 507 A 1 
HETATM 9 C C2 78M . . . H 4 4.787 12.467 14.941 1 86.39 ? C2 78M 507 A 1 
HETATM 10 C C3 78M . . . H 4 5.469 13.815 14.849 1 83.16 ? C3 78M 507 A 1 
HETATM 11 C C4 78M . . . H 4 6.078 13.989 13.418 1 63.68 ? C4 78M 507 A 1 
HETATM 12 C C5 78M . . . H 4 4.955 13.888 12.387 1 61.46 ? C5 78M 507 A 1 
HETATM 13 C C6 78M . . . H 4 4.946 15.148 11.522 1 64.06 ? C6 78M 507 A 1 
HETATM 14 C C7 78M . . . H 4 5.429 14.783 10.09 1 56.17 ? C7 78M 507 A 1 
HETATM 15 C C8 78M . . . H 4 4.96 15.472 8.984 1 62.14 ? C8 78M 507 A 1 
HETATM 16 C C9 78M . . . H 4 5.459 15.086 7.625 1 65.73 ? C9 78M 507 A 1 
HETATM 17 C C10 78M . . . H 4 4.472 15.556 6.52 1 72.51 ? C10 78M 507 A 1 
HETATM 18 C C11 78M . . . H 4 5.242 15.776 5.164 1 69.69 ? C11 78M 507 A 1 
HETATM 19 C C12 78M . . . H 4 5.099 14.546 4.245 1 75.57 ? C12 78M 507 A 1 
HETATM 20 C C13 78M . . . H 4 4.58 15.012 2.834 1 112.35 ? C13 78M 507 A 1 
HETATM 21 C C15 78M . . . H 4 5.108 13.543 0.863 1 108.23 ? C15 78M 507 A 1 
HETATM 22 C C14 78M . . . H 4 5.627 14.68 1.754 1 109.74 ? C14 78M 507 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#