data_5OXN
#
_model_server_result.job_id            mDzARaSBWPCa4p8sUw3hqQ 
_model_server_result.datetime_utc      '2024-11-05 06:53:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oxn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    5OXN 
#
_exptl.entry_id    5OXN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OXN 
_cell.length_a            100.8 
_cell.length_b            107.9 
_cell.length_c            109.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OXN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 316 A SER 316 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc2 A O PHE 319 A PHE 319 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc3 D NA NA . A NA 503 1_555 S O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc4 D NA NA . A NA 503 1_555 S O HOH . A HOH 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5OXN 
_atom_sites.fract_transf_matrix[1][1]    0.009921 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009268 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009107 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 501 1 PO4 PO4 . 
C 2 PO4 A 1 502 2 PO4 PO4 . 
D 3 NA A 1 503 3 NA NA . 
E 4 78N A 1 504 1 78N 78N . 
F 4 78N A 1 505 2 78N 78N . 
G 5 78M A 1 506 3 78M 78M . 
H 4 78N A 1 507 4 78N 78N . 
I 4 78N A 1 508 5 78N 78N . 
J 4 78N A 1 509 6 78N 78N . 
K 4 78N A 1 510 7 78N 78N . 
L 4 78N A 1 511 8 78N 78N . 
M 4 78N A 1 512 9 78N 78N . 
N 4 78N A 1 513 10 78N 78N . 
O 4 78N A 1 514 11 78N 78N . 
P 4 78N A 1 515 12 78N 78N . 
Q 6 PHE A 1 516 1 PHE PHE . 
R 7 ALA A 1 517 2 ALA ALA . 
S 8 HOH A 1 601 71 HOH HOH . 
S 8 HOH A 2 602 65 HOH HOH . 
S 8 HOH A 3 603 36 HOH HOH . 
S 8 HOH A 4 604 24 HOH HOH . 
S 8 HOH A 5 605 46 HOH HOH . 
S 8 HOH A 6 606 22 HOH HOH . 
S 8 HOH A 7 607 8 HOH HOH . 
S 8 HOH A 8 608 15 HOH HOH . 
S 8 HOH A 9 609 4 HOH HOH . 
S 8 HOH A 10 610 18 HOH HOH . 
S 8 HOH A 11 611 9 HOH HOH . 
S 8 HOH A 12 612 32 HOH HOH . 
S 8 HOH A 13 613 57 HOH HOH . 
S 8 HOH A 14 614 30 HOH HOH . 
S 8 HOH A 15 615 48 HOH HOH . 
S 8 HOH A 16 616 1 HOH HOH . 
S 8 HOH A 17 617 5 HOH HOH . 
S 8 HOH A 18 618 17 HOH HOH . 
S 8 HOH A 19 619 25 HOH HOH . 
S 8 HOH A 20 620 59 HOH HOH . 
S 8 HOH A 21 621 10 HOH HOH . 
S 8 HOH A 22 622 26 HOH HOH . 
S 8 HOH A 23 623 40 HOH HOH . 
S 8 HOH A 24 624 51 HOH HOH . 
S 8 HOH A 25 625 31 HOH HOH . 
S 8 HOH A 26 626 2 HOH HOH . 
S 8 HOH A 27 627 35 HOH HOH . 
S 8 HOH A 28 628 50 HOH HOH . 
S 8 HOH A 29 629 70 HOH HOH . 
S 8 HOH A 30 630 20 HOH HOH . 
S 8 HOH A 31 631 7 HOH HOH . 
S 8 HOH A 32 632 69 HOH HOH . 
S 8 HOH A 33 633 41 HOH HOH . 
S 8 HOH A 34 634 73 HOH HOH . 
S 8 HOH A 35 635 39 HOH HOH . 
S 8 HOH A 36 636 6 HOH HOH . 
S 8 HOH A 37 637 68 HOH HOH . 
S 8 HOH A 38 638 27 HOH HOH . 
S 8 HOH A 39 639 21 HOH HOH . 
S 8 HOH A 40 640 37 HOH HOH . 
S 8 HOH A 41 641 33 HOH HOH . 
S 8 HOH A 42 642 23 HOH HOH . 
S 8 HOH A 43 643 3 HOH HOH . 
S 8 HOH A 44 644 58 HOH HOH . 
S 8 HOH A 45 645 29 HOH HOH . 
S 8 HOH A 46 646 11 HOH HOH . 
S 8 HOH A 47 647 43 HOH HOH . 
S 8 HOH A 48 648 53 HOH HOH . 
S 8 HOH A 49 649 12 HOH HOH . 
S 8 HOH A 50 650 13 HOH HOH . 
S 8 HOH A 51 651 19 HOH HOH . 
S 8 HOH A 52 652 47 HOH HOH . 
S 8 HOH A 53 653 44 HOH HOH . 
S 8 HOH A 54 654 60 HOH HOH . 
S 8 HOH A 55 655 72 HOH HOH . 
S 8 HOH A 56 656 63 HOH HOH . 
S 8 HOH A 57 657 61 HOH HOH . 
S 8 HOH A 58 658 38 HOH HOH . 
S 8 HOH A 59 659 34 HOH HOH . 
S 8 HOH A 60 660 42 HOH HOH . 
S 8 HOH A 61 661 62 HOH HOH . 
S 8 HOH A 62 662 54 HOH HOH . 
S 8 HOH A 63 663 28 HOH HOH . 
S 8 HOH A 64 664 45 HOH HOH . 
S 8 HOH A 65 665 55 HOH HOH . 
S 8 HOH A 66 666 14 HOH HOH . 
S 8 HOH A 67 667 66 HOH HOH . 
S 8 HOH A 68 668 16 HOH HOH . 
S 8 HOH A 69 669 49 HOH HOH . 
S 8 HOH A 70 670 67 HOH HOH . 
S 8 HOH A 71 671 64 HOH HOH . 
S 8 HOH A 72 672 52 HOH HOH . 
S 8 HOH A 73 673 56 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               22.27 
_atom_site.Cartn_y               8.144 
_atom_site.Cartn_z               18.601 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        80.76 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#