data_5OXN
#
_model_server_result.job_id            -VBTC5e6KQq9VQgW70TmdA 
_model_server_result.datetime_utc      '2024-11-05 06:46:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oxn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":505}' 
#
_entry.id    5OXN 
#
_exptl.entry_id    5OXN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OXN 
_cell.length_a            100.8 
_cell.length_b            107.9 
_cell.length_c            109.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OXN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 316 A SER 316 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc2 A O PHE 319 A PHE 319 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc3 D NA NA . A NA 503 1_555 S O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc4 D NA NA . A NA 503 1_555 S O HOH . A HOH 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL (2R)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C19 78N sing 56 n n 
C19 C18 78N sing 57 n n 
C18 O20 78N sing 58 n n 
C18 C17 78N sing 59 n n 
C17 O16 78N sing 60 n n 
O16 C8 78N sing 61 n n 
C8 O15 78N doub 62 n n 
C8 C7 78N sing 63 n n 
C7 C6 78N sing 64 n n 
C6 C5 78N sing 65 n n 
C5 C4 78N sing 66 n n 
C4 C3 78N sing 67 n n 
C3 C2 78N sing 68 n n 
C2 C1 78N doub 69 z n 
C1 C9 78N sing 70 n n 
C9 C10 78N sing 71 n n 
C10 C11 78N sing 72 n n 
C11 C12 78N sing 73 n n 
C12 C13 78N sing 74 n n 
C13 C14 78N sing 75 n n 
C15 C14 78N sing 76 n n 
O22 H22 78N sing 77 n n 
C19 H191 78N sing 78 n n 
C19 H192 78N sing 79 n n 
C18 H18 78N sing 80 n n 
O20 H20 78N sing 81 n n 
C17 H171 78N sing 82 n n 
C17 H172 78N sing 83 n n 
C7 H71 78N sing 84 n n 
C7 H72 78N sing 85 n n 
C6 H61C 78N sing 86 n n 
C6 H62C 78N sing 87 n n 
C5 H51C 78N sing 88 n n 
C5 H52C 78N sing 89 n n 
C4 H41C 78N sing 90 n n 
C4 H42C 78N sing 91 n n 
C3 H31C 78N sing 92 n n 
C3 H32C 78N sing 93 n n 
C2 H2 78N sing 94 n n 
C1 H1 78N sing 95 n n 
C9 H91C 78N sing 96 n n 
C9 H92C 78N sing 97 n n 
C10 H101 78N sing 98 n n 
C10 H102 78N sing 99 n n 
C11 H111 78N sing 100 n n 
C11 H112 78N sing 101 n n 
C12 H121 78N sing 102 n n 
C12 H122 78N sing 103 n n 
C13 H131 78N sing 104 n n 
C13 H132 78N sing 105 n n 
C14 H141 78N sing 106 n n 
C14 H142 78N sing 107 n n 
C15 H151 78N sing 108 n n 
C15 H152 78N sing 109 n n 
C15 H153 78N sing 110 n n 
#
_atom_sites.entry_id                     5OXN 
_atom_sites.fract_transf_matrix[1][1]    0.009921 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009268 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009107 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 501 1 PO4 PO4 . 
C 2 PO4 A 1 502 2 PO4 PO4 . 
D 3 NA A 1 503 3 NA NA . 
E 4 78N A 1 504 1 78N 78N . 
F 4 78N A 1 505 2 78N 78N . 
G 5 78M A 1 506 3 78M 78M . 
H 4 78N A 1 507 4 78N 78N . 
I 4 78N A 1 508 5 78N 78N . 
J 4 78N A 1 509 6 78N 78N . 
K 4 78N A 1 510 7 78N 78N . 
L 4 78N A 1 511 8 78N 78N . 
M 4 78N A 1 512 9 78N 78N . 
N 4 78N A 1 513 10 78N 78N . 
O 4 78N A 1 514 11 78N 78N . 
P 4 78N A 1 515 12 78N 78N . 
Q 6 PHE A 1 516 1 PHE PHE . 
R 7 ALA A 1 517 2 ALA ALA . 
S 8 HOH A 1 601 71 HOH HOH . 
S 8 HOH A 2 602 65 HOH HOH . 
S 8 HOH A 3 603 36 HOH HOH . 
S 8 HOH A 4 604 24 HOH HOH . 
S 8 HOH A 5 605 46 HOH HOH . 
S 8 HOH A 6 606 22 HOH HOH . 
S 8 HOH A 7 607 8 HOH HOH . 
S 8 HOH A 8 608 15 HOH HOH . 
S 8 HOH A 9 609 4 HOH HOH . 
S 8 HOH A 10 610 18 HOH HOH . 
S 8 HOH A 11 611 9 HOH HOH . 
S 8 HOH A 12 612 32 HOH HOH . 
S 8 HOH A 13 613 57 HOH HOH . 
S 8 HOH A 14 614 30 HOH HOH . 
S 8 HOH A 15 615 48 HOH HOH . 
S 8 HOH A 16 616 1 HOH HOH . 
S 8 HOH A 17 617 5 HOH HOH . 
S 8 HOH A 18 618 17 HOH HOH . 
S 8 HOH A 19 619 25 HOH HOH . 
S 8 HOH A 20 620 59 HOH HOH . 
S 8 HOH A 21 621 10 HOH HOH . 
S 8 HOH A 22 622 26 HOH HOH . 
S 8 HOH A 23 623 40 HOH HOH . 
S 8 HOH A 24 624 51 HOH HOH . 
S 8 HOH A 25 625 31 HOH HOH . 
S 8 HOH A 26 626 2 HOH HOH . 
S 8 HOH A 27 627 35 HOH HOH . 
S 8 HOH A 28 628 50 HOH HOH . 
S 8 HOH A 29 629 70 HOH HOH . 
S 8 HOH A 30 630 20 HOH HOH . 
S 8 HOH A 31 631 7 HOH HOH . 
S 8 HOH A 32 632 69 HOH HOH . 
S 8 HOH A 33 633 41 HOH HOH . 
S 8 HOH A 34 634 73 HOH HOH . 
S 8 HOH A 35 635 39 HOH HOH . 
S 8 HOH A 36 636 6 HOH HOH . 
S 8 HOH A 37 637 68 HOH HOH . 
S 8 HOH A 38 638 27 HOH HOH . 
S 8 HOH A 39 639 21 HOH HOH . 
S 8 HOH A 40 640 37 HOH HOH . 
S 8 HOH A 41 641 33 HOH HOH . 
S 8 HOH A 42 642 23 HOH HOH . 
S 8 HOH A 43 643 3 HOH HOH . 
S 8 HOH A 44 644 58 HOH HOH . 
S 8 HOH A 45 645 29 HOH HOH . 
S 8 HOH A 46 646 11 HOH HOH . 
S 8 HOH A 47 647 43 HOH HOH . 
S 8 HOH A 48 648 53 HOH HOH . 
S 8 HOH A 49 649 12 HOH HOH . 
S 8 HOH A 50 650 13 HOH HOH . 
S 8 HOH A 51 651 19 HOH HOH . 
S 8 HOH A 52 652 47 HOH HOH . 
S 8 HOH A 53 653 44 HOH HOH . 
S 8 HOH A 54 654 60 HOH HOH . 
S 8 HOH A 55 655 72 HOH HOH . 
S 8 HOH A 56 656 63 HOH HOH . 
S 8 HOH A 57 657 61 HOH HOH . 
S 8 HOH A 58 658 38 HOH HOH . 
S 8 HOH A 59 659 34 HOH HOH . 
S 8 HOH A 60 660 42 HOH HOH . 
S 8 HOH A 61 661 62 HOH HOH . 
S 8 HOH A 62 662 54 HOH HOH . 
S 8 HOH A 63 663 28 HOH HOH . 
S 8 HOH A 64 664 45 HOH HOH . 
S 8 HOH A 65 665 55 HOH HOH . 
S 8 HOH A 66 666 14 HOH HOH . 
S 8 HOH A 67 667 66 HOH HOH . 
S 8 HOH A 68 668 16 HOH HOH . 
S 8 HOH A 69 669 49 HOH HOH . 
S 8 HOH A 70 670 67 HOH HOH . 
S 8 HOH A 71 671 64 HOH HOH . 
S 8 HOH A 72 672 52 HOH HOH . 
S 8 HOH A 73 673 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O22 78N . . . F 4 2.224 14.145 18.911 1 75.59 ? O22 78N 505 A 1 
HETATM 2 C C19 78N . . . F 4 2.267 15.547 18.557 1 76.02 ? C19 78N 505 A 1 
HETATM 3 C C18 78N . . . F 4 2.274 15.715 17.026 1 78.17 ? C18 78N 505 A 1 
HETATM 4 O O20 78N . . . F 4 1.384 14.768 16.445 1 81.04 ? O20 78N 505 A 1 
HETATM 5 C C17 78N . . . F 4 1.842 17.127 16.67 1 79.81 ? C17 78N 505 A 1 
HETATM 6 O O16 78N . . . F 4 1.049 17.134 15.499 1 81.02 ? O16 78N 505 A 1 
HETATM 7 C C8 78N . . . F 4 1.541 17.974 14.468 1 83.42 ? C8 78N 505 A 1 
HETATM 8 O O15 78N . . . F 4 1.583 19.159 14.617 1 91 ? O15 78N 505 A 1 
HETATM 9 C C7 78N . . . F 4 2.019 17.381 13.154 1 79.57 ? C7 78N 505 A 1 
HETATM 10 C C6 78N . . . F 4 2.869 18.438 12.422 1 79.81 ? C6 78N 505 A 1 
HETATM 11 C C5 78N . . . F 4 1.987 19.23 11.386 1 95.31 ? C5 78N 505 A 1 
HETATM 12 C C4 78N . . . F 4 1.145 18.235 10.588 1 97.26 ? C4 78N 505 A 1 
HETATM 13 C C3 78N . . . F 4 1.458 18.336 9.08 1 100.18 ? C3 78N 505 A 1 
HETATM 14 C C2 78N . . . F 4 0.178 18.672 8.337 1 100.6 ? C2 78N 505 A 1 
HETATM 15 C C1 78N . . . F 4 -0.116 18.103 7.136 1 100.36 ? C1 78N 505 A 1 
HETATM 16 C C9 78N . . . F 4 0.839 17.074 6.457 1 106.3 ? C9 78N 505 A 1 
HETATM 17 C C10 78N . . . F 4 0.39 16.882 5.01 1 107.15 ? C10 78N 505 A 1 
HETATM 18 C C11 78N . . . F 4 1.034 15.634 4.401 1 107 ? C11 78N 505 A 1 
HETATM 19 C C12 78N . . . F 4 -0.053 14.547 4.171 1 104.05 ? C12 78N 505 A 1 
HETATM 20 C C13 78N . . . F 4 0.287 13.721 2.932 1 103.6 ? C13 78N 505 A 1 
HETATM 21 C C15 78N . . . F 4 -0.254 11.623 1.663 1 102.5 ? C15 78N 505 A 1 
HETATM 22 C C14 78N . . . F 4 -0.562 12.432 2.927 1 101.73 ? C14 78N 505 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           22 
#