data_5OXN
#
_model_server_result.job_id            fpT0a7LuVHEwHmBDdsR3SA 
_model_server_result.datetime_utc      '2024-11-05 06:37:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oxn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":506}' 
#
_entry.id    5OXN 
#
_exptl.entry_id    5OXN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OXN 
_cell.length_a            100.8 
_cell.length_b            107.9 
_cell.length_c            109.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OXN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 316 A SER 316 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc2 A O PHE 319 A PHE 319 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc3 D NA NA . A NA 503 1_555 S O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc4 D NA NA . A NA 503 1_555 S O HOH . A HOH 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C20 78M sing 1 n n 
C20 C18 78M sing 2 n n 
C18 O19 78M sing 3 n n 
C18 C17 78M sing 4 n n 
C17 O2 78M sing 5 n n 
O2 C1 78M sing 6 n n 
C1 O1 78M doub 7 n n 
C1 C2 78M sing 8 n n 
C2 C3 78M sing 9 n n 
C3 C4 78M sing 10 n n 
C4 C5 78M sing 11 n n 
C5 C6 78M sing 12 n n 
C6 C7 78M sing 13 n n 
C7 C8 78M doub 14 z n 
C8 C9 78M sing 15 n n 
C9 C10 78M sing 16 n n 
C10 C11 78M sing 17 n n 
C11 C12 78M sing 18 n n 
C12 C13 78M sing 19 n n 
C15 C14 78M sing 20 n n 
C13 C14 78M sing 21 n n 
O21 H21 78M sing 22 n n 
C20 H201 78M sing 23 n n 
C20 H202 78M sing 24 n n 
C18 H18 78M sing 25 n n 
O19 H19 78M sing 26 n n 
C17 H171 78M sing 27 n n 
C17 H172 78M sing 28 n n 
C2 H21C 78M sing 29 n n 
C2 H22C 78M sing 30 n n 
C3 H31C 78M sing 31 n n 
C3 H32C 78M sing 32 n n 
C4 H41C 78M sing 33 n n 
C4 H42C 78M sing 34 n n 
C5 H51C 78M sing 35 n n 
C5 H52C 78M sing 36 n n 
C6 H61C 78M sing 37 n n 
C6 H62C 78M sing 38 n n 
C7 H7 78M sing 39 n n 
C8 H8 78M sing 40 n n 
C9 H91C 78M sing 41 n n 
C9 H92C 78M sing 42 n n 
C10 H101 78M sing 43 n n 
C10 H102 78M sing 44 n n 
C11 H111 78M sing 45 n n 
C11 H112 78M sing 46 n n 
C12 H121 78M sing 47 n n 
C12 H122 78M sing 48 n n 
C13 H131 78M sing 49 n n 
C13 H132 78M sing 50 n n 
C15 H151 78M sing 51 n n 
C15 H152 78M sing 52 n n 
C15 H153 78M sing 53 n n 
C14 H141 78M sing 54 n n 
C14 H142 78M sing 55 n n 
#
_atom_sites.entry_id                     5OXN 
_atom_sites.fract_transf_matrix[1][1]    0.009921 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009268 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009107 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 501 1 PO4 PO4 . 
C 2 PO4 A 1 502 2 PO4 PO4 . 
D 3 NA A 1 503 3 NA NA . 
E 4 78N A 1 504 1 78N 78N . 
F 4 78N A 1 505 2 78N 78N . 
G 5 78M A 1 506 3 78M 78M . 
H 4 78N A 1 507 4 78N 78N . 
I 4 78N A 1 508 5 78N 78N . 
J 4 78N A 1 509 6 78N 78N . 
K 4 78N A 1 510 7 78N 78N . 
L 4 78N A 1 511 8 78N 78N . 
M 4 78N A 1 512 9 78N 78N . 
N 4 78N A 1 513 10 78N 78N . 
O 4 78N A 1 514 11 78N 78N . 
P 4 78N A 1 515 12 78N 78N . 
Q 6 PHE A 1 516 1 PHE PHE . 
R 7 ALA A 1 517 2 ALA ALA . 
S 8 HOH A 1 601 71 HOH HOH . 
S 8 HOH A 2 602 65 HOH HOH . 
S 8 HOH A 3 603 36 HOH HOH . 
S 8 HOH A 4 604 24 HOH HOH . 
S 8 HOH A 5 605 46 HOH HOH . 
S 8 HOH A 6 606 22 HOH HOH . 
S 8 HOH A 7 607 8 HOH HOH . 
S 8 HOH A 8 608 15 HOH HOH . 
S 8 HOH A 9 609 4 HOH HOH . 
S 8 HOH A 10 610 18 HOH HOH . 
S 8 HOH A 11 611 9 HOH HOH . 
S 8 HOH A 12 612 32 HOH HOH . 
S 8 HOH A 13 613 57 HOH HOH . 
S 8 HOH A 14 614 30 HOH HOH . 
S 8 HOH A 15 615 48 HOH HOH . 
S 8 HOH A 16 616 1 HOH HOH . 
S 8 HOH A 17 617 5 HOH HOH . 
S 8 HOH A 18 618 17 HOH HOH . 
S 8 HOH A 19 619 25 HOH HOH . 
S 8 HOH A 20 620 59 HOH HOH . 
S 8 HOH A 21 621 10 HOH HOH . 
S 8 HOH A 22 622 26 HOH HOH . 
S 8 HOH A 23 623 40 HOH HOH . 
S 8 HOH A 24 624 51 HOH HOH . 
S 8 HOH A 25 625 31 HOH HOH . 
S 8 HOH A 26 626 2 HOH HOH . 
S 8 HOH A 27 627 35 HOH HOH . 
S 8 HOH A 28 628 50 HOH HOH . 
S 8 HOH A 29 629 70 HOH HOH . 
S 8 HOH A 30 630 20 HOH HOH . 
S 8 HOH A 31 631 7 HOH HOH . 
S 8 HOH A 32 632 69 HOH HOH . 
S 8 HOH A 33 633 41 HOH HOH . 
S 8 HOH A 34 634 73 HOH HOH . 
S 8 HOH A 35 635 39 HOH HOH . 
S 8 HOH A 36 636 6 HOH HOH . 
S 8 HOH A 37 637 68 HOH HOH . 
S 8 HOH A 38 638 27 HOH HOH . 
S 8 HOH A 39 639 21 HOH HOH . 
S 8 HOH A 40 640 37 HOH HOH . 
S 8 HOH A 41 641 33 HOH HOH . 
S 8 HOH A 42 642 23 HOH HOH . 
S 8 HOH A 43 643 3 HOH HOH . 
S 8 HOH A 44 644 58 HOH HOH . 
S 8 HOH A 45 645 29 HOH HOH . 
S 8 HOH A 46 646 11 HOH HOH . 
S 8 HOH A 47 647 43 HOH HOH . 
S 8 HOH A 48 648 53 HOH HOH . 
S 8 HOH A 49 649 12 HOH HOH . 
S 8 HOH A 50 650 13 HOH HOH . 
S 8 HOH A 51 651 19 HOH HOH . 
S 8 HOH A 52 652 47 HOH HOH . 
S 8 HOH A 53 653 44 HOH HOH . 
S 8 HOH A 54 654 60 HOH HOH . 
S 8 HOH A 55 655 72 HOH HOH . 
S 8 HOH A 56 656 63 HOH HOH . 
S 8 HOH A 57 657 61 HOH HOH . 
S 8 HOH A 58 658 38 HOH HOH . 
S 8 HOH A 59 659 34 HOH HOH . 
S 8 HOH A 60 660 42 HOH HOH . 
S 8 HOH A 61 661 62 HOH HOH . 
S 8 HOH A 62 662 54 HOH HOH . 
S 8 HOH A 63 663 28 HOH HOH . 
S 8 HOH A 64 664 45 HOH HOH . 
S 8 HOH A 65 665 55 HOH HOH . 
S 8 HOH A 66 666 14 HOH HOH . 
S 8 HOH A 67 667 66 HOH HOH . 
S 8 HOH A 68 668 16 HOH HOH . 
S 8 HOH A 69 669 49 HOH HOH . 
S 8 HOH A 70 670 67 HOH HOH . 
S 8 HOH A 71 671 64 HOH HOH . 
S 8 HOH A 72 672 52 HOH HOH . 
S 8 HOH A 73 673 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 78M . . . G 5 5.137 10.639 17.274 1 95.39 ? O21 78M 506 A 1 
HETATM 2 C C20 78M . . . G 5 5.582 12.018 17.248 1 96.56 ? C20 78M 506 A 1 
HETATM 3 C C18 78M . . . G 5 4.702 12.858 16.322 1 98.05 ? C18 78M 506 A 1 
HETATM 4 O O19 78M . . . G 5 3.78 12.048 15.693 1 103.26 ? O19 78M 506 A 1 
HETATM 5 C C17 78M . . . G 5 5.548 13.546 15.273 1 93.79 ? C17 78M 506 A 1 
HETATM 6 O O2 78M . . . G 5 4.796 13.595 14.077 1 90.87 ? O2 78M 506 A 1 
HETATM 7 C C1 78M . . . G 5 5.238 14.537 13.102 1 84.95 ? C1 78M 506 A 1 
HETATM 8 O O1 78M . . . G 5 5.96 15.478 13.426 1 87.51 ? O1 78M 506 A 1 
HETATM 9 C C2 78M . . . G 5 4.806 14.374 11.625 1 80.03 ? C2 78M 506 A 1 
HETATM 10 C C3 78M . . . G 5 5.004 15.677 10.875 1 78.24 ? C3 78M 506 A 1 
HETATM 11 C C4 78M . . . G 5 5.241 15.368 9.36 1 84.32 ? C4 78M 506 A 1 
HETATM 12 C C5 78M . . . G 5 4.179 16.077 8.52 1 83.59 ? C5 78M 506 A 1 
HETATM 13 C C6 78M . . . G 5 4.794 16.595 7.217 1 81.97 ? C6 78M 506 A 1 
HETATM 14 C C7 78M . . . G 5 4.755 15.475 6.137 1 68.82 ? C7 78M 506 A 1 
HETATM 15 C C8 78M . . . G 5 4.791 15.807 4.797 1 67.59 ? C8 78M 506 A 1 
HETATM 16 C C9 78M . . . G 5 4.753 14.733 3.758 1 69.13 ? C9 78M 506 A 1 
HETATM 17 C C10 78M . . . G 5 4.752 15.391 2.349 1 91.55 ? C10 78M 506 A 1 
HETATM 18 C C11 78M . . . G 5 4.515 14.289 1.255 1 91.5 ? C11 78M 506 A 1 
HETATM 19 C C12 78M . . . G 5 3.183 14.56 0.53 1 95.54 ? C12 78M 506 A 1 
HETATM 20 C C13 78M . . . G 5 3.461 14.905 -0.981 1 109.9 ? C13 78M 506 A 1 
HETATM 21 C C15 78M . . . G 5 3.322 13.653 -3.149 1 105.87 ? C15 78M 506 A 1 
HETATM 22 C C14 78M . . . G 5 2.552 14.051 -1.882 1 107.94 ? C14 78M 506 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           22 
#