data_5OXO # _model_server_result.job_id f54KbfLZ4X-b9hDFXmqjSQ _model_server_result.datetime_utc '2024-11-06 01:39:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 5OXO # _exptl.entry_id 5OXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OXO _cell.length_a 102.1 _cell.length_b 110.3 _cell.length_c 110.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 316 A SER 316 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc2 A OG SER 316 A SER 316 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc3 A O PHE 319 A PHE 319 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc4 B NA NA . A NA 501 1_555 Z O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc5 B NA NA . A NA 501 1_555 Z O HOH . A HOH 611 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 B NA NA . A NA 501 1_555 Z O HOH . A HOH 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 217 n n C1 O2 CIT sing 218 n n C1 C2 CIT sing 219 n n O2 HO2 CIT sing 220 n n C2 C3 CIT sing 221 n n C2 H21 CIT sing 222 n n C2 H22 CIT sing 223 n n C3 O7 CIT sing 224 n n C3 C4 CIT sing 225 n n C3 C6 CIT sing 226 n n O7 HO7 CIT sing 227 n n C4 C5 CIT sing 228 n n C4 H41 CIT sing 229 n n C4 H42 CIT sing 230 n n C5 O3 CIT doub 231 n n C5 O4 CIT sing 232 n n O4 HO4 CIT sing 233 n n C6 O5 CIT doub 234 n n C6 O6 CIT sing 235 n n O6 HO6 CIT sing 236 n n # _atom_sites.entry_id 5OXO _atom_sites.fract_transf_matrix[1][1] 0.009794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 1 NA NA . C 3 1PE A 1 502 1 1PE 1PE . D 3 1PE A 1 503 2 1PE 1PE . E 4 CIT A 1 504 3 CIT CIT . F 5 78N A 1 505 1 78N 78N . G 6 78M A 1 506 2 78M 78M . H 5 78N A 1 507 3 78N 78N . I 5 78N A 1 508 4 78N 78N . J 6 78M A 1 509 5 78M 78M . K 5 78N A 1 510 6 78N 78N . L 5 78N A 1 511 7 78N 78N . M 5 78N A 1 512 8 78N 78N . N 5 78N A 1 513 9 78N 78N . O 5 78N A 1 514 10 78N 78N . P 5 78N A 1 515 11 78N 78N . Q 5 78N A 1 516 12 78N 78N . R 5 78N A 1 517 13 78N 78N . S 6 78M A 1 518 14 78M 78M . T 6 78M A 1 519 15 78M 78M . U 5 78N A 1 520 16 78N 78N . V 6 78M A 1 521 17 78M 78M . W 5 78N A 1 522 18 78N 78N . X 5 78N A 1 523 19 78N 78N . Y 5 78N A 1 524 20 78N 78N . Z 7 HOH A 1 601 174 HOH HOH . Z 7 HOH A 2 602 175 HOH HOH . Z 7 HOH A 3 603 168 HOH HOH . Z 7 HOH A 4 604 71 HOH HOH . Z 7 HOH A 5 605 148 HOH HOH . Z 7 HOH A 6 606 64 HOH HOH . Z 7 HOH A 7 607 110 HOH HOH . Z 7 HOH A 8 608 161 HOH HOH . Z 7 HOH A 9 609 146 HOH HOH . Z 7 HOH A 10 610 46 HOH HOH . Z 7 HOH A 11 611 96 HOH HOH . Z 7 HOH A 12 612 80 HOH HOH . Z 7 HOH A 13 613 6 HOH HOH . Z 7 HOH A 14 614 73 HOH HOH . Z 7 HOH A 15 615 18 HOH HOH . Z 7 HOH A 16 616 162 HOH HOH . Z 7 HOH A 17 617 138 HOH HOH . Z 7 HOH A 18 618 27 HOH HOH . Z 7 HOH A 19 619 44 HOH HOH . Z 7 HOH A 20 620 141 HOH HOH . Z 7 HOH A 21 621 10 HOH HOH . Z 7 HOH A 22 622 145 HOH HOH . Z 7 HOH A 23 623 109 HOH HOH . Z 7 HOH A 24 624 77 HOH HOH . Z 7 HOH A 25 625 111 HOH HOH . Z 7 HOH A 26 626 7 HOH HOH . Z 7 HOH A 27 627 113 HOH HOH . Z 7 HOH A 28 628 51 HOH HOH . Z 7 HOH A 29 629 139 HOH HOH . Z 7 HOH A 30 630 45 HOH HOH . Z 7 HOH A 31 631 29 HOH HOH . Z 7 HOH A 32 632 30 HOH HOH . Z 7 HOH A 33 633 136 HOH HOH . Z 7 HOH A 34 634 41 HOH HOH . Z 7 HOH A 35 635 159 HOH HOH . Z 7 HOH A 36 636 104 HOH HOH . Z 7 HOH A 37 637 97 HOH HOH . Z 7 HOH A 38 638 23 HOH HOH . Z 7 HOH A 39 639 169 HOH HOH . Z 7 HOH A 40 640 124 HOH HOH . Z 7 HOH A 41 641 21 HOH HOH . Z 7 HOH A 42 642 84 HOH HOH . Z 7 HOH A 43 643 25 HOH HOH . Z 7 HOH A 44 644 76 HOH HOH . Z 7 HOH A 45 645 37 HOH HOH . Z 7 HOH A 46 646 9 HOH HOH . Z 7 HOH A 47 647 94 HOH HOH . Z 7 HOH A 48 648 59 HOH HOH . Z 7 HOH A 49 649 131 HOH HOH . Z 7 HOH A 50 650 36 HOH HOH . Z 7 HOH A 51 651 105 HOH HOH . Z 7 HOH A 52 652 100 HOH HOH . Z 7 HOH A 53 653 58 HOH HOH . Z 7 HOH A 54 654 24 HOH HOH . Z 7 HOH A 55 655 20 HOH HOH . Z 7 HOH A 56 656 8 HOH HOH . Z 7 HOH A 57 657 86 HOH HOH . Z 7 HOH A 58 658 52 HOH HOH . Z 7 HOH A 59 659 26 HOH HOH . Z 7 HOH A 60 660 103 HOH HOH . Z 7 HOH A 61 661 4 HOH HOH . Z 7 HOH A 62 662 87 HOH HOH . Z 7 HOH A 63 663 127 HOH HOH . Z 7 HOH A 64 664 69 HOH HOH . Z 7 HOH A 65 665 172 HOH HOH . Z 7 HOH A 66 666 32 HOH HOH . Z 7 HOH A 67 667 34 HOH HOH . Z 7 HOH A 68 668 78 HOH HOH . Z 7 HOH A 69 669 61 HOH HOH . Z 7 HOH A 70 670 160 HOH HOH . Z 7 HOH A 71 671 74 HOH HOH . Z 7 HOH A 72 672 54 HOH HOH . Z 7 HOH A 73 673 13 HOH HOH . Z 7 HOH A 74 674 49 HOH HOH . Z 7 HOH A 75 675 2 HOH HOH . Z 7 HOH A 76 676 28 HOH HOH . Z 7 HOH A 77 677 40 HOH HOH . Z 7 HOH A 78 678 68 HOH HOH . Z 7 HOH A 79 679 101 HOH HOH . Z 7 HOH A 80 680 90 HOH HOH . Z 7 HOH A 81 681 123 HOH HOH . Z 7 HOH A 82 682 99 HOH HOH . Z 7 HOH A 83 683 75 HOH HOH . Z 7 HOH A 84 684 42 HOH HOH . Z 7 HOH A 85 685 56 HOH HOH . Z 7 HOH A 86 686 65 HOH HOH . Z 7 HOH A 87 687 132 HOH HOH . Z 7 HOH A 88 688 167 HOH HOH . Z 7 HOH A 89 689 5 HOH HOH . Z 7 HOH A 90 690 93 HOH HOH . Z 7 HOH A 91 691 83 HOH HOH . Z 7 HOH A 92 692 16 HOH HOH . Z 7 HOH A 93 693 3 HOH HOH . Z 7 HOH A 94 694 115 HOH HOH . Z 7 HOH A 95 695 133 HOH HOH . Z 7 HOH A 96 696 12 HOH HOH . Z 7 HOH A 97 697 72 HOH HOH . Z 7 HOH A 98 698 66 HOH HOH . Z 7 HOH A 99 699 137 HOH HOH . Z 7 HOH A 100 700 120 HOH HOH . Z 7 HOH A 101 701 11 HOH HOH . Z 7 HOH A 102 702 55 HOH HOH . Z 7 HOH A 103 703 67 HOH HOH . Z 7 HOH A 104 704 126 HOH HOH . Z 7 HOH A 105 705 15 HOH HOH . Z 7 HOH A 106 706 43 HOH HOH . Z 7 HOH A 107 707 63 HOH HOH . Z 7 HOH A 108 708 38 HOH HOH . Z 7 HOH A 109 709 14 HOH HOH . Z 7 HOH A 110 710 60 HOH HOH . Z 7 HOH A 111 711 31 HOH HOH . Z 7 HOH A 112 712 85 HOH HOH . Z 7 HOH A 113 713 102 HOH HOH . Z 7 HOH A 114 714 50 HOH HOH . Z 7 HOH A 115 715 154 HOH HOH . Z 7 HOH A 116 716 106 HOH HOH . Z 7 HOH A 117 717 1 HOH HOH . Z 7 HOH A 118 718 19 HOH HOH . Z 7 HOH A 119 719 107 HOH HOH . Z 7 HOH A 120 720 116 HOH HOH . Z 7 HOH A 121 721 33 HOH HOH . Z 7 HOH A 122 722 173 HOH HOH . Z 7 HOH A 123 723 140 HOH HOH . Z 7 HOH A 124 724 142 HOH HOH . Z 7 HOH A 125 725 39 HOH HOH . Z 7 HOH A 126 726 125 HOH HOH . Z 7 HOH A 127 727 53 HOH HOH . Z 7 HOH A 128 728 17 HOH HOH . Z 7 HOH A 129 729 153 HOH HOH . Z 7 HOH A 130 730 57 HOH HOH . Z 7 HOH A 131 731 48 HOH HOH . Z 7 HOH A 132 732 166 HOH HOH . Z 7 HOH A 133 733 35 HOH HOH . Z 7 HOH A 134 734 79 HOH HOH . Z 7 HOH A 135 735 98 HOH HOH . Z 7 HOH A 136 736 130 HOH HOH . Z 7 HOH A 137 737 176 HOH HOH . Z 7 HOH A 138 738 164 HOH HOH . Z 7 HOH A 139 739 165 HOH HOH . Z 7 HOH A 140 740 22 HOH HOH . Z 7 HOH A 141 741 134 HOH HOH . Z 7 HOH A 142 742 47 HOH HOH . Z 7 HOH A 143 743 82 HOH HOH . Z 7 HOH A 144 744 150 HOH HOH . Z 7 HOH A 145 745 144 HOH HOH . Z 7 HOH A 146 746 119 HOH HOH . Z 7 HOH A 147 747 129 HOH HOH . Z 7 HOH A 148 748 149 HOH HOH . Z 7 HOH A 149 749 171 HOH HOH . Z 7 HOH A 150 750 121 HOH HOH . Z 7 HOH A 151 751 114 HOH HOH . Z 7 HOH A 152 752 91 HOH HOH . Z 7 HOH A 153 753 128 HOH HOH . Z 7 HOH A 154 754 163 HOH HOH . Z 7 HOH A 155 755 170 HOH HOH . Z 7 HOH A 156 756 108 HOH HOH . Z 7 HOH A 157 757 135 HOH HOH . Z 7 HOH A 158 758 155 HOH HOH . Z 7 HOH A 159 759 88 HOH HOH . Z 7 HOH A 160 760 92 HOH HOH . Z 7 HOH A 161 761 117 HOH HOH . Z 7 HOH A 162 762 151 HOH HOH . Z 7 HOH A 163 763 177 HOH HOH . Z 7 HOH A 164 764 122 HOH HOH . Z 7 HOH A 165 765 70 HOH HOH . Z 7 HOH A 166 766 147 HOH HOH . Z 7 HOH A 167 767 112 HOH HOH . Z 7 HOH A 168 768 157 HOH HOH . Z 7 HOH A 169 769 152 HOH HOH . Z 7 HOH A 170 770 118 HOH HOH . Z 7 HOH A 171 771 81 HOH HOH . Z 7 HOH A 172 772 62 HOH HOH . Z 7 HOH A 173 773 158 HOH HOH . Z 7 HOH A 174 774 89 HOH HOH . Z 7 HOH A 175 775 143 HOH HOH . Z 7 HOH A 176 776 156 HOH HOH . Z 7 HOH A 177 777 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . E 4 -40.453 -11.295 17.605 1 98.83 ? C1 CIT 504 A 1 HETATM 2 O O1 CIT . . . E 4 -39.975 -11.625 16.487 1 98.05 ? O1 CIT 504 A 1 HETATM 3 O O2 CIT . . . E 4 -41.599 -11.697 17.94 1 100.57 -1 O2 CIT 504 A 1 HETATM 4 C C2 CIT . . . E 4 -39.648 -10.431 18.553 1 95.77 ? C2 CIT 504 A 1 HETATM 5 C C3 CIT . . . E 4 -39.612 -8.987 18.107 1 90.96 ? C3 CIT 504 A 1 HETATM 6 O O7 CIT . . . E 4 -40.905 -8.566 17.743 1 90.28 ? O7 CIT 504 A 1 HETATM 7 C C4 CIT . . . E 4 -39.104 -8.146 19.256 1 90.78 ? C4 CIT 504 A 1 HETATM 8 C C5 CIT . . . E 4 -39.478 -6.7 19.026 1 89.59 ? C5 CIT 504 A 1 HETATM 9 O O3 CIT . . . E 4 -38.939 -6.053 18.092 1 87.59 ? O3 CIT 504 A 1 HETATM 10 O O4 CIT . . . E 4 -40.327 -6.147 19.774 1 92.26 -1 O4 CIT 504 A 1 HETATM 11 C C6 CIT . . . E 4 -38.667 -8.837 16.934 1 86.01 ? C6 CIT 504 A 1 HETATM 12 O O5 CIT . . . E 4 -39.113 -8.502 15.804 1 85.97 ? O5 CIT 504 A 1 HETATM 13 O O6 CIT . . . E 4 -37.433 -9.04 17.097 1 82.14 -1 O6 CIT 504 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #