data_5OXP # _model_server_result.job_id nToycY4ySXDbH_W8QhWGGQ _model_server_result.datetime_utc '2024-11-27 11:09:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 5OXP # _exptl.entry_id 5OXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OXP _cell.length_a 101.6 _cell.length_b 110.1 _cell.length_c 107.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5OXP _atom_sites.fract_transf_matrix[1][1] 0.009843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 1 PO4 PO4 . C 2 PO4 A 1 502 2 PO4 PO4 . D 2 PO4 A 1 503 3 PO4 PO4 . E 2 PO4 A 1 504 4 PO4 PO4 . F 2 PO4 A 1 505 5 PO4 PO4 . G 3 1PE A 1 506 6 1PE 1PE . H 3 1PE A 1 507 7 1PE 1PE . I 4 78N A 1 508 1 78N 78N . J 4 78N A 1 509 2 78N 78N . K 5 78M A 1 510 3 78M 78M . L 4 78N A 1 511 4 78N 78N . M 4 78N A 1 512 5 78N 78N . N 4 78N A 1 513 6 78N 78N . O 4 78N A 1 514 7 78N 78N . P 4 78N A 1 515 8 78N 78N . Q 4 78N A 1 516 9 78N 78N . R 4 78N A 1 517 10 78N 78N . S 5 78M A 1 518 11 78M 78M . T 4 78N A 1 519 12 78N 78N . U 4 78N A 1 520 13 78N 78N . V 4 78N A 1 521 14 78N 78N . W 4 78N A 1 522 15 78N 78N . X 4 78N A 1 523 16 78N 78N . Y 6 HOH A 1 601 11 HOH HOH . Y 6 HOH A 2 602 34 HOH HOH . Y 6 HOH A 3 603 3 HOH HOH . Y 6 HOH A 4 604 18 HOH HOH . Y 6 HOH A 5 605 1 HOH HOH . Y 6 HOH A 6 606 9 HOH HOH . Y 6 HOH A 7 607 21 HOH HOH . Y 6 HOH A 8 608 26 HOH HOH . Y 6 HOH A 9 609 8 HOH HOH . Y 6 HOH A 10 610 12 HOH HOH . Y 6 HOH A 11 611 37 HOH HOH . Y 6 HOH A 12 612 36 HOH HOH . Y 6 HOH A 13 613 5 HOH HOH . Y 6 HOH A 14 614 13 HOH HOH . Y 6 HOH A 15 615 35 HOH HOH . Y 6 HOH A 16 616 16 HOH HOH . Y 6 HOH A 17 617 20 HOH HOH . Y 6 HOH A 18 618 22 HOH HOH . Y 6 HOH A 19 619 25 HOH HOH . Y 6 HOH A 20 620 15 HOH HOH . Y 6 HOH A 21 621 31 HOH HOH . Y 6 HOH A 22 622 7 HOH HOH . Y 6 HOH A 23 623 6 HOH HOH . Y 6 HOH A 24 624 19 HOH HOH . Y 6 HOH A 25 625 4 HOH HOH . Y 6 HOH A 26 626 28 HOH HOH . Y 6 HOH A 27 627 14 HOH HOH . Y 6 HOH A 28 628 27 HOH HOH . Y 6 HOH A 29 629 29 HOH HOH . Y 6 HOH A 30 630 2 HOH HOH . Y 6 HOH A 31 631 30 HOH HOH . Y 6 HOH A 32 632 17 HOH HOH . Y 6 HOH A 33 633 33 HOH HOH . Y 6 HOH A 34 634 24 HOH HOH . Y 6 HOH A 35 635 10 HOH HOH . Y 6 HOH A 36 636 23 HOH HOH . Y 6 HOH A 37 637 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . G 3 10.213 24.179 -16.548 1 115.3 ? OH2 1PE 506 A 1 HETATM 2 C C12 1PE . . . G 3 9.107 23.352 -16.795 1 115.59 ? C12 1PE 506 A 1 HETATM 3 C C22 1PE . . . G 3 9.367 22.037 -16.032 1 116.4 ? C22 1PE 506 A 1 HETATM 4 O OH3 1PE . . . G 3 10.38 22.275 -15.063 1 117.02 ? OH3 1PE 506 A 1 HETATM 5 C C13 1PE . . . G 3 11.198 20.605 -13.521 1 111.66 ? C13 1PE 506 A 1 HETATM 6 C C23 1PE . . . G 3 11.267 21.171 -14.956 1 114.52 ? C23 1PE 506 A 1 HETATM 7 O OH4 1PE . . . G 3 12.297 21.062 -12.77 1 111.93 ? OH4 1PE 506 A 1 HETATM 8 C C14 1PE . . . G 3 13.819 22.913 -12.634 1 112.72 ? C14 1PE 506 A 1 HETATM 9 C C24 1PE . . . G 3 12.35 22.468 -12.711 1 112.99 ? C24 1PE 506 A 1 HETATM 10 O OH5 1PE . . . G 3 13.969 24.102 -13.365 1 111.98 ? OH5 1PE 506 A 1 HETATM 11 C C15 1PE . . . G 3 15.23 24.93 -15.224 1 111.81 ? C15 1PE 506 A 1 HETATM 12 C C25 1PE . . . G 3 15.273 24.26 -13.844 1 111.16 ? C25 1PE 506 A 1 HETATM 13 O OH6 1PE . . . G 3 14.669 26.202 -15.065 1 111.77 ? OH6 1PE 506 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #