data_5OXP
#
_model_server_result.job_id            pcTL488b7iC9GbN-pJahiA 
_model_server_result.datetime_utc      '2024-11-05 06:43:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oxp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":512}' 
#
_entry.id    5OXP 
#
_exptl.entry_id    5OXP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OXP 
_cell.length_a            101.6 
_cell.length_b            110.1 
_cell.length_c            107.9 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OXP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL (2R)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C19 78N sing 93 n n 
C19 C18 78N sing 94 n n 
C18 O20 78N sing 95 n n 
C18 C17 78N sing 96 n n 
C17 O16 78N sing 97 n n 
O16 C8 78N sing 98 n n 
C8 O15 78N doub 99 n n 
C8 C7 78N sing 100 n n 
C7 C6 78N sing 101 n n 
C6 C5 78N sing 102 n n 
C5 C4 78N sing 103 n n 
C4 C3 78N sing 104 n n 
C3 C2 78N sing 105 n n 
C2 C1 78N doub 106 z n 
C1 C9 78N sing 107 n n 
C9 C10 78N sing 108 n n 
C10 C11 78N sing 109 n n 
C11 C12 78N sing 110 n n 
C12 C13 78N sing 111 n n 
C13 C14 78N sing 112 n n 
C15 C14 78N sing 113 n n 
O22 H22 78N sing 114 n n 
C19 H191 78N sing 115 n n 
C19 H192 78N sing 116 n n 
C18 H18 78N sing 117 n n 
O20 H20 78N sing 118 n n 
C17 H171 78N sing 119 n n 
C17 H172 78N sing 120 n n 
C7 H71 78N sing 121 n n 
C7 H72 78N sing 122 n n 
C6 H61C 78N sing 123 n n 
C6 H62C 78N sing 124 n n 
C5 H51C 78N sing 125 n n 
C5 H52C 78N sing 126 n n 
C4 H41C 78N sing 127 n n 
C4 H42C 78N sing 128 n n 
C3 H31C 78N sing 129 n n 
C3 H32C 78N sing 130 n n 
C2 H2 78N sing 131 n n 
C1 H1 78N sing 132 n n 
C9 H91C 78N sing 133 n n 
C9 H92C 78N sing 134 n n 
C10 H101 78N sing 135 n n 
C10 H102 78N sing 136 n n 
C11 H111 78N sing 137 n n 
C11 H112 78N sing 138 n n 
C12 H121 78N sing 139 n n 
C12 H122 78N sing 140 n n 
C13 H131 78N sing 141 n n 
C13 H132 78N sing 142 n n 
C14 H141 78N sing 143 n n 
C14 H142 78N sing 144 n n 
C15 H151 78N sing 145 n n 
C15 H152 78N sing 146 n n 
C15 H153 78N sing 147 n n 
#
_atom_sites.entry_id                     5OXP 
_atom_sites.fract_transf_matrix[1][1]    0.009843 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009083 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009268 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 501 1 PO4 PO4 . 
C 2 PO4 A 1 502 2 PO4 PO4 . 
D 2 PO4 A 1 503 3 PO4 PO4 . 
E 2 PO4 A 1 504 4 PO4 PO4 . 
F 2 PO4 A 1 505 5 PO4 PO4 . 
G 3 1PE A 1 506 6 1PE 1PE . 
H 3 1PE A 1 507 7 1PE 1PE . 
I 4 78N A 1 508 1 78N 78N . 
J 4 78N A 1 509 2 78N 78N . 
K 5 78M A 1 510 3 78M 78M . 
L 4 78N A 1 511 4 78N 78N . 
M 4 78N A 1 512 5 78N 78N . 
N 4 78N A 1 513 6 78N 78N . 
O 4 78N A 1 514 7 78N 78N . 
P 4 78N A 1 515 8 78N 78N . 
Q 4 78N A 1 516 9 78N 78N . 
R 4 78N A 1 517 10 78N 78N . 
S 5 78M A 1 518 11 78M 78M . 
T 4 78N A 1 519 12 78N 78N . 
U 4 78N A 1 520 13 78N 78N . 
V 4 78N A 1 521 14 78N 78N . 
W 4 78N A 1 522 15 78N 78N . 
X 4 78N A 1 523 16 78N 78N . 
Y 6 HOH A 1 601 11 HOH HOH . 
Y 6 HOH A 2 602 34 HOH HOH . 
Y 6 HOH A 3 603 3 HOH HOH . 
Y 6 HOH A 4 604 18 HOH HOH . 
Y 6 HOH A 5 605 1 HOH HOH . 
Y 6 HOH A 6 606 9 HOH HOH . 
Y 6 HOH A 7 607 21 HOH HOH . 
Y 6 HOH A 8 608 26 HOH HOH . 
Y 6 HOH A 9 609 8 HOH HOH . 
Y 6 HOH A 10 610 12 HOH HOH . 
Y 6 HOH A 11 611 37 HOH HOH . 
Y 6 HOH A 12 612 36 HOH HOH . 
Y 6 HOH A 13 613 5 HOH HOH . 
Y 6 HOH A 14 614 13 HOH HOH . 
Y 6 HOH A 15 615 35 HOH HOH . 
Y 6 HOH A 16 616 16 HOH HOH . 
Y 6 HOH A 17 617 20 HOH HOH . 
Y 6 HOH A 18 618 22 HOH HOH . 
Y 6 HOH A 19 619 25 HOH HOH . 
Y 6 HOH A 20 620 15 HOH HOH . 
Y 6 HOH A 21 621 31 HOH HOH . 
Y 6 HOH A 22 622 7 HOH HOH . 
Y 6 HOH A 23 623 6 HOH HOH . 
Y 6 HOH A 24 624 19 HOH HOH . 
Y 6 HOH A 25 625 4 HOH HOH . 
Y 6 HOH A 26 626 28 HOH HOH . 
Y 6 HOH A 27 627 14 HOH HOH . 
Y 6 HOH A 28 628 27 HOH HOH . 
Y 6 HOH A 29 629 29 HOH HOH . 
Y 6 HOH A 30 630 2 HOH HOH . 
Y 6 HOH A 31 631 30 HOH HOH . 
Y 6 HOH A 32 632 17 HOH HOH . 
Y 6 HOH A 33 633 33 HOH HOH . 
Y 6 HOH A 34 634 24 HOH HOH . 
Y 6 HOH A 35 635 10 HOH HOH . 
Y 6 HOH A 36 636 23 HOH HOH . 
Y 6 HOH A 37 637 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O22 78N . . . M 4 42.365 4.658 15.109 1 87.13 ? O22 78N 512 A 1 
HETATM 2 C C19 78N . . . M 4 43.776 4.719 14.789 1 87.45 ? C19 78N 512 A 1 
HETATM 3 C C18 78N . . . M 4 43.964 5.458 13.446 1 87.43 ? C18 78N 512 A 1 
HETATM 4 O O20 78N . . . M 4 45.31 5.337 12.984 1 88.76 ? O20 78N 512 A 1 
HETATM 5 C C17 78N . . . M 4 42.98 4.901 12.42 1 84.59 ? C17 78N 512 A 1 
HETATM 6 O O16 78N . . . M 4 43.491 3.794 11.709 1 81.31 ? O16 78N 512 A 1 
HETATM 7 C C8 78N . . . M 4 43.899 4.096 10.389 1 81.52 ? C8 78N 512 A 1 
HETATM 8 O O15 78N . . . M 4 44.604 5.043 10.195 1 83.77 ? O15 78N 512 A 1 
HETATM 9 C C7 78N . . . M 4 43.456 3.228 9.219 1 80.62 ? C7 78N 512 A 1 
HETATM 10 C C6 78N . . . M 4 44.541 3.212 8.119 1 80.62 ? C6 78N 512 A 1 
HETATM 11 C C5 78N . . . M 4 43.983 3.777 6.753 1 80.57 ? C5 78N 512 A 1 
HETATM 12 C C4 78N . . . M 4 43.99 2.674 5.687 1 80.29 ? C4 78N 512 A 1 
HETATM 13 C C3 78N . . . M 4 44.393 3.238 4.301 1 73.38 ? C3 78N 512 A 1 
HETATM 14 C C2 78N . . . M 4 43.472 4.382 3.915 1 77.63 ? C2 78N 512 A 1 
HETATM 15 C C1 78N . . . M 4 43.335 4.751 2.61 1 79.71 ? C1 78N 512 A 1 
HETATM 16 C C9 78N . . . M 4 44.122 4.007 1.489 1 89.32 ? C9 78N 512 A 1 
HETATM 17 C C10 78N . . . M 4 43.673 4.522 0.122 1 90.39 ? C10 78N 512 A 1 
HETATM 18 C C11 78N . . . M 4 44.769 4.263 -0.922 1 92.85 ? C11 78N 512 A 1 
HETATM 19 C C12 78N . . . M 4 45.949 5.265 -0.736 1 112.21 ? C12 78N 512 A 1 
HETATM 20 C C13 78N . . . M 4 47.258 4.641 -1.226 1 113.29 ? C13 78N 512 A 1 
HETATM 21 C C15 78N . . . M 4 48.369 3.365 -3.108 1 113.15 ? C15 78N 512 A 1 
HETATM 22 C C14 78N . . . M 4 47.09 4.096 -2.665 1 113.85 ? C14 78N 512 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#