data_5OXP # _model_server_result.job_id uTM5YK5m14fbMZFm2MAlVQ _model_server_result.datetime_utc '2024-11-27 10:58:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":512}' # _entry.id 5OXP # _exptl.entry_id 5OXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OXP _cell.length_a 101.6 _cell.length_b 110.1 _cell.length_c 107.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78N _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL (2R)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C19 78N sing 93 n n C19 C18 78N sing 94 n n C18 O20 78N sing 95 n n C18 C17 78N sing 96 n n C17 O16 78N sing 97 n n O16 C8 78N sing 98 n n C8 O15 78N doub 99 n n C8 C7 78N sing 100 n n C7 C6 78N sing 101 n n C6 C5 78N sing 102 n n C5 C4 78N sing 103 n n C4 C3 78N sing 104 n n C3 C2 78N sing 105 n n C2 C1 78N doub 106 z n C1 C9 78N sing 107 n n C9 C10 78N sing 108 n n C10 C11 78N sing 109 n n C11 C12 78N sing 110 n n C12 C13 78N sing 111 n n C13 C14 78N sing 112 n n C15 C14 78N sing 113 n n O22 H22 78N sing 114 n n C19 H191 78N sing 115 n n C19 H192 78N sing 116 n n C18 H18 78N sing 117 n n O20 H20 78N sing 118 n n C17 H171 78N sing 119 n n C17 H172 78N sing 120 n n C7 H71 78N sing 121 n n C7 H72 78N sing 122 n n C6 H61C 78N sing 123 n n C6 H62C 78N sing 124 n n C5 H51C 78N sing 125 n n C5 H52C 78N sing 126 n n C4 H41C 78N sing 127 n n C4 H42C 78N sing 128 n n C3 H31C 78N sing 129 n n C3 H32C 78N sing 130 n n C2 H2 78N sing 131 n n C1 H1 78N sing 132 n n C9 H91C 78N sing 133 n n C9 H92C 78N sing 134 n n C10 H101 78N sing 135 n n C10 H102 78N sing 136 n n C11 H111 78N sing 137 n n C11 H112 78N sing 138 n n C12 H121 78N sing 139 n n C12 H122 78N sing 140 n n C13 H131 78N sing 141 n n C13 H132 78N sing 142 n n C14 H141 78N sing 143 n n C14 H142 78N sing 144 n n C15 H151 78N sing 145 n n C15 H152 78N sing 146 n n C15 H153 78N sing 147 n n # _atom_sites.entry_id 5OXP _atom_sites.fract_transf_matrix[1][1] 0.009843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 1 PO4 PO4 . C 2 PO4 A 1 502 2 PO4 PO4 . D 2 PO4 A 1 503 3 PO4 PO4 . E 2 PO4 A 1 504 4 PO4 PO4 . F 2 PO4 A 1 505 5 PO4 PO4 . G 3 1PE A 1 506 6 1PE 1PE . H 3 1PE A 1 507 7 1PE 1PE . I 4 78N A 1 508 1 78N 78N . J 4 78N A 1 509 2 78N 78N . K 5 78M A 1 510 3 78M 78M . L 4 78N A 1 511 4 78N 78N . M 4 78N A 1 512 5 78N 78N . N 4 78N A 1 513 6 78N 78N . O 4 78N A 1 514 7 78N 78N . P 4 78N A 1 515 8 78N 78N . Q 4 78N A 1 516 9 78N 78N . R 4 78N A 1 517 10 78N 78N . S 5 78M A 1 518 11 78M 78M . T 4 78N A 1 519 12 78N 78N . U 4 78N A 1 520 13 78N 78N . V 4 78N A 1 521 14 78N 78N . W 4 78N A 1 522 15 78N 78N . X 4 78N A 1 523 16 78N 78N . Y 6 HOH A 1 601 11 HOH HOH . Y 6 HOH A 2 602 34 HOH HOH . Y 6 HOH A 3 603 3 HOH HOH . Y 6 HOH A 4 604 18 HOH HOH . Y 6 HOH A 5 605 1 HOH HOH . Y 6 HOH A 6 606 9 HOH HOH . Y 6 HOH A 7 607 21 HOH HOH . Y 6 HOH A 8 608 26 HOH HOH . Y 6 HOH A 9 609 8 HOH HOH . Y 6 HOH A 10 610 12 HOH HOH . Y 6 HOH A 11 611 37 HOH HOH . Y 6 HOH A 12 612 36 HOH HOH . Y 6 HOH A 13 613 5 HOH HOH . Y 6 HOH A 14 614 13 HOH HOH . Y 6 HOH A 15 615 35 HOH HOH . Y 6 HOH A 16 616 16 HOH HOH . Y 6 HOH A 17 617 20 HOH HOH . Y 6 HOH A 18 618 22 HOH HOH . Y 6 HOH A 19 619 25 HOH HOH . Y 6 HOH A 20 620 15 HOH HOH . Y 6 HOH A 21 621 31 HOH HOH . Y 6 HOH A 22 622 7 HOH HOH . Y 6 HOH A 23 623 6 HOH HOH . Y 6 HOH A 24 624 19 HOH HOH . Y 6 HOH A 25 625 4 HOH HOH . Y 6 HOH A 26 626 28 HOH HOH . Y 6 HOH A 27 627 14 HOH HOH . Y 6 HOH A 28 628 27 HOH HOH . Y 6 HOH A 29 629 29 HOH HOH . Y 6 HOH A 30 630 2 HOH HOH . Y 6 HOH A 31 631 30 HOH HOH . Y 6 HOH A 32 632 17 HOH HOH . Y 6 HOH A 33 633 33 HOH HOH . Y 6 HOH A 34 634 24 HOH HOH . Y 6 HOH A 35 635 10 HOH HOH . Y 6 HOH A 36 636 23 HOH HOH . Y 6 HOH A 37 637 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 78N . . . M 4 42.365 4.658 15.109 1 87.13 ? O22 78N 512 A 1 HETATM 2 C C19 78N . . . M 4 43.776 4.719 14.789 1 87.45 ? C19 78N 512 A 1 HETATM 3 C C18 78N . . . M 4 43.964 5.458 13.446 1 87.43 ? C18 78N 512 A 1 HETATM 4 O O20 78N . . . M 4 45.31 5.337 12.984 1 88.76 ? O20 78N 512 A 1 HETATM 5 C C17 78N . . . M 4 42.98 4.901 12.42 1 84.59 ? C17 78N 512 A 1 HETATM 6 O O16 78N . . . M 4 43.491 3.794 11.709 1 81.31 ? O16 78N 512 A 1 HETATM 7 C C8 78N . . . M 4 43.899 4.096 10.389 1 81.52 ? C8 78N 512 A 1 HETATM 8 O O15 78N . . . M 4 44.604 5.043 10.195 1 83.77 ? O15 78N 512 A 1 HETATM 9 C C7 78N . . . M 4 43.456 3.228 9.219 1 80.62 ? C7 78N 512 A 1 HETATM 10 C C6 78N . . . M 4 44.541 3.212 8.119 1 80.62 ? C6 78N 512 A 1 HETATM 11 C C5 78N . . . M 4 43.983 3.777 6.753 1 80.57 ? C5 78N 512 A 1 HETATM 12 C C4 78N . . . M 4 43.99 2.674 5.687 1 80.29 ? C4 78N 512 A 1 HETATM 13 C C3 78N . . . M 4 44.393 3.238 4.301 1 73.38 ? C3 78N 512 A 1 HETATM 14 C C2 78N . . . M 4 43.472 4.382 3.915 1 77.63 ? C2 78N 512 A 1 HETATM 15 C C1 78N . . . M 4 43.335 4.751 2.61 1 79.71 ? C1 78N 512 A 1 HETATM 16 C C9 78N . . . M 4 44.122 4.007 1.489 1 89.32 ? C9 78N 512 A 1 HETATM 17 C C10 78N . . . M 4 43.673 4.522 0.122 1 90.39 ? C10 78N 512 A 1 HETATM 18 C C11 78N . . . M 4 44.769 4.263 -0.922 1 92.85 ? C11 78N 512 A 1 HETATM 19 C C12 78N . . . M 4 45.949 5.265 -0.736 1 112.21 ? C12 78N 512 A 1 HETATM 20 C C13 78N . . . M 4 47.258 4.641 -1.226 1 113.29 ? C13 78N 512 A 1 HETATM 21 C C15 78N . . . M 4 48.369 3.365 -3.108 1 113.15 ? C15 78N 512 A 1 HETATM 22 C C14 78N . . . M 4 47.09 4.096 -2.665 1 113.85 ? C14 78N 512 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 22 #