data_5OXP # _model_server_result.job_id gdTC1Ke1Jj7E4S72XWHpRA _model_server_result.datetime_utc '2024-11-05 06:57:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":518}' # _entry.id 5OXP # _exptl.entry_id 5OXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OXP _cell.length_a 101.6 _cell.length_b 110.1 _cell.length_c 107.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 S N N # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78M _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C20 78M sing 38 n n C20 C18 78M sing 39 n n C18 O19 78M sing 40 n n C18 C17 78M sing 41 n n C17 O2 78M sing 42 n n O2 C1 78M sing 43 n n C1 O1 78M doub 44 n n C1 C2 78M sing 45 n n C2 C3 78M sing 46 n n C3 C4 78M sing 47 n n C4 C5 78M sing 48 n n C5 C6 78M sing 49 n n C6 C7 78M sing 50 n n C7 C8 78M doub 51 z n C8 C9 78M sing 52 n n C9 C10 78M sing 53 n n C10 C11 78M sing 54 n n C11 C12 78M sing 55 n n C12 C13 78M sing 56 n n C15 C14 78M sing 57 n n C13 C14 78M sing 58 n n O21 H21 78M sing 59 n n C20 H201 78M sing 60 n n C20 H202 78M sing 61 n n C18 H18 78M sing 62 n n O19 H19 78M sing 63 n n C17 H171 78M sing 64 n n C17 H172 78M sing 65 n n C2 H21C 78M sing 66 n n C2 H22C 78M sing 67 n n C3 H31C 78M sing 68 n n C3 H32C 78M sing 69 n n C4 H41C 78M sing 70 n n C4 H42C 78M sing 71 n n C5 H51C 78M sing 72 n n C5 H52C 78M sing 73 n n C6 H61C 78M sing 74 n n C6 H62C 78M sing 75 n n C7 H7 78M sing 76 n n C8 H8 78M sing 77 n n C9 H91C 78M sing 78 n n C9 H92C 78M sing 79 n n C10 H101 78M sing 80 n n C10 H102 78M sing 81 n n C11 H111 78M sing 82 n n C11 H112 78M sing 83 n n C12 H121 78M sing 84 n n C12 H122 78M sing 85 n n C13 H131 78M sing 86 n n C13 H132 78M sing 87 n n C15 H151 78M sing 88 n n C15 H152 78M sing 89 n n C15 H153 78M sing 90 n n C14 H141 78M sing 91 n n C14 H142 78M sing 92 n n # _atom_sites.entry_id 5OXP _atom_sites.fract_transf_matrix[1][1] 0.009843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 1 PO4 PO4 . C 2 PO4 A 1 502 2 PO4 PO4 . D 2 PO4 A 1 503 3 PO4 PO4 . E 2 PO4 A 1 504 4 PO4 PO4 . F 2 PO4 A 1 505 5 PO4 PO4 . G 3 1PE A 1 506 6 1PE 1PE . H 3 1PE A 1 507 7 1PE 1PE . I 4 78N A 1 508 1 78N 78N . J 4 78N A 1 509 2 78N 78N . K 5 78M A 1 510 3 78M 78M . L 4 78N A 1 511 4 78N 78N . M 4 78N A 1 512 5 78N 78N . N 4 78N A 1 513 6 78N 78N . O 4 78N A 1 514 7 78N 78N . P 4 78N A 1 515 8 78N 78N . Q 4 78N A 1 516 9 78N 78N . R 4 78N A 1 517 10 78N 78N . S 5 78M A 1 518 11 78M 78M . T 4 78N A 1 519 12 78N 78N . U 4 78N A 1 520 13 78N 78N . V 4 78N A 1 521 14 78N 78N . W 4 78N A 1 522 15 78N 78N . X 4 78N A 1 523 16 78N 78N . Y 6 HOH A 1 601 11 HOH HOH . Y 6 HOH A 2 602 34 HOH HOH . Y 6 HOH A 3 603 3 HOH HOH . Y 6 HOH A 4 604 18 HOH HOH . Y 6 HOH A 5 605 1 HOH HOH . Y 6 HOH A 6 606 9 HOH HOH . Y 6 HOH A 7 607 21 HOH HOH . Y 6 HOH A 8 608 26 HOH HOH . Y 6 HOH A 9 609 8 HOH HOH . Y 6 HOH A 10 610 12 HOH HOH . Y 6 HOH A 11 611 37 HOH HOH . Y 6 HOH A 12 612 36 HOH HOH . Y 6 HOH A 13 613 5 HOH HOH . Y 6 HOH A 14 614 13 HOH HOH . Y 6 HOH A 15 615 35 HOH HOH . Y 6 HOH A 16 616 16 HOH HOH . Y 6 HOH A 17 617 20 HOH HOH . Y 6 HOH A 18 618 22 HOH HOH . Y 6 HOH A 19 619 25 HOH HOH . Y 6 HOH A 20 620 15 HOH HOH . Y 6 HOH A 21 621 31 HOH HOH . Y 6 HOH A 22 622 7 HOH HOH . Y 6 HOH A 23 623 6 HOH HOH . Y 6 HOH A 24 624 19 HOH HOH . Y 6 HOH A 25 625 4 HOH HOH . Y 6 HOH A 26 626 28 HOH HOH . Y 6 HOH A 27 627 14 HOH HOH . Y 6 HOH A 28 628 27 HOH HOH . Y 6 HOH A 29 629 29 HOH HOH . Y 6 HOH A 30 630 2 HOH HOH . Y 6 HOH A 31 631 30 HOH HOH . Y 6 HOH A 32 632 17 HOH HOH . Y 6 HOH A 33 633 33 HOH HOH . Y 6 HOH A 34 634 24 HOH HOH . Y 6 HOH A 35 635 10 HOH HOH . Y 6 HOH A 36 636 23 HOH HOH . Y 6 HOH A 37 637 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 78M . . . S 5 16.935 34.727 17.293 1 104.69 ? O21 78M 518 A 1 HETATM 2 C C20 78M . . . S 5 17.018 33.574 16.427 1 103.09 ? C20 78M 518 A 1 HETATM 3 C C18 78M . . . S 5 17.775 33.95 15.156 1 103.8 ? C18 78M 518 A 1 HETATM 4 O O19 78M . . . S 5 18.862 34.742 15.478 1 104.55 ? O19 78M 518 A 1 HETATM 5 C C17 78M . . . S 5 16.84 34.683 14.218 1 105.81 ? C17 78M 518 A 1 HETATM 6 O O2 78M . . . S 5 16.764 36.049 14.573 1 111.14 ? O2 78M 518 A 1 HETATM 7 C C1 78M . . . S 5 16.818 36.947 13.462 1 111.64 ? C1 78M 518 A 1 HETATM 8 O O1 78M . . . S 5 16.428 36.559 12.359 1 110.49 ? O1 78M 518 A 1 HETATM 9 C C2 78M . . . S 5 17.37 38.386 13.632 1 104.59 ? C2 78M 518 A 1 HETATM 10 C C3 78M . . . S 5 17.935 38.895 12.309 1 106.01 ? C3 78M 518 A 1 HETATM 11 C C4 78M . . . S 5 19.227 38.109 11.885 1 88.96 ? C4 78M 518 A 1 HETATM 12 C C5 78M . . . S 5 20.034 38.9 10.848 1 88.13 ? C5 78M 518 A 1 HETATM 13 C C6 78M . . . S 5 19.964 38.248 9.459 1 86.89 ? C6 78M 518 A 1 HETATM 14 C C7 78M . . . S 5 18.556 38.471 8.82 1 71.82 ? C7 78M 518 A 1 HETATM 15 C C8 78M . . . S 5 18.292 38.251 7.472 1 67.83 ? C8 78M 518 A 1 HETATM 16 C C9 78M . . . S 5 19.38 37.784 6.565 1 68.81 ? C9 78M 518 A 1 HETATM 17 C C10 78M . . . S 5 18.787 37.323 5.202 1 70.02 ? C10 78M 518 A 1 HETATM 18 C C11 78M . . . S 5 19.909 37.469 4.108 1 84.3 ? C11 78M 518 A 1 HETATM 19 C C12 78M . . . S 5 19.39 37.031 2.724 1 83.91 ? C12 78M 518 A 1 HETATM 20 C C13 78M . . . S 5 18.769 38.26 1.96 1 93.71 ? C13 78M 518 A 1 HETATM 21 C C15 78M . . . S 5 17.198 38.733 0.02 1 95.04 ? C15 78M 518 A 1 HETATM 22 C C14 78M . . . S 5 18.264 37.778 0.583 1 95.15 ? C14 78M 518 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #