data_5OXQ # _model_server_result.job_id 5Acfu3p2C4kFq5IbIVbe6Q _model_server_result.datetime_utc '2024-11-08 06:50:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oxq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5OXQ # _exptl.entry_id 5OXQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OXQ _cell.length_a 102.21 _cell.length_b 110.05 _cell.length_c 109.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OXQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 316 A SER 316 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 A O PHE 319 A PHE 319 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc3 B NA NA . A NA 501 1_555 BA O HOH . A HOH 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 B NA NA . A NA 501 1_555 BA O HOH . A HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OXQ _atom_sites.fract_transf_matrix[1][1] 0.009784 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 1 NA NA . C 3 PO4 A 1 502 1 PO4 PO4 . D 3 PO4 A 1 503 2 PO4 PO4 . E 3 PO4 A 1 504 3 PO4 PO4 . F 3 PO4 A 1 505 4 PO4 PO4 . G 4 1PE A 1 506 5 1PE 1PE . H 5 EPE A 1 507 6 EPE EPE . I 5 EPE A 1 508 7 EPE EPE . J 6 78N A 1 509 1 78N 78N . K 7 78M A 1 510 2 78M 78M . L 6 78N A 1 511 3 78N 78N . M 7 78M A 1 512 4 78M 78M . N 6 78N A 1 513 5 78N 78N . O 6 78N A 1 514 6 78N 78N . P 6 78N A 1 515 7 78N 78N . Q 6 78N A 1 516 8 78N 78N . R 6 78N A 1 517 9 78N 78N . S 6 78N A 1 518 10 78N 78N . T 6 78N A 1 519 11 78N 78N . U 6 78N A 1 520 12 78N 78N . V 6 78N A 1 521 13 78N 78N . W 7 78M A 1 522 14 78M 78M . X 7 78M A 1 523 15 78M 78M . Y 6 78N A 1 524 16 78N 78N . Z 6 78N A 1 525 17 78N 78N . AA 6 78N A 1 526 18 78N 78N . BA 8 HOH A 1 601 60 HOH HOH . BA 8 HOH A 2 602 63 HOH HOH . BA 8 HOH A 3 603 6 HOH HOH . BA 8 HOH A 4 604 50 HOH HOH . BA 8 HOH A 5 605 26 HOH HOH . BA 8 HOH A 6 606 7 HOH HOH . BA 8 HOH A 7 607 69 HOH HOH . BA 8 HOH A 8 608 4 HOH HOH . BA 8 HOH A 9 609 81 HOH HOH . BA 8 HOH A 10 610 18 HOH HOH . BA 8 HOH A 11 611 98 HOH HOH . BA 8 HOH A 12 612 74 HOH HOH . BA 8 HOH A 13 613 47 HOH HOH . BA 8 HOH A 14 614 70 HOH HOH . BA 8 HOH A 15 615 39 HOH HOH . BA 8 HOH A 16 616 92 HOH HOH . BA 8 HOH A 17 617 83 HOH HOH . BA 8 HOH A 18 618 87 HOH HOH . BA 8 HOH A 19 619 28 HOH HOH . BA 8 HOH A 20 620 68 HOH HOH . BA 8 HOH A 21 621 32 HOH HOH . BA 8 HOH A 22 622 22 HOH HOH . BA 8 HOH A 23 623 95 HOH HOH . BA 8 HOH A 24 624 30 HOH HOH . BA 8 HOH A 25 625 8 HOH HOH . BA 8 HOH A 26 626 85 HOH HOH . BA 8 HOH A 27 627 90 HOH HOH . BA 8 HOH A 28 628 12 HOH HOH . BA 8 HOH A 29 629 46 HOH HOH . BA 8 HOH A 30 630 9 HOH HOH . BA 8 HOH A 31 631 89 HOH HOH . BA 8 HOH A 32 632 61 HOH HOH . BA 8 HOH A 33 633 5 HOH HOH . BA 8 HOH A 34 634 35 HOH HOH . BA 8 HOH A 35 635 19 HOH HOH . BA 8 HOH A 36 636 16 HOH HOH . BA 8 HOH A 37 637 10 HOH HOH . BA 8 HOH A 38 638 84 HOH HOH . BA 8 HOH A 39 639 14 HOH HOH . BA 8 HOH A 40 640 23 HOH HOH . BA 8 HOH A 41 641 54 HOH HOH . BA 8 HOH A 42 642 52 HOH HOH . BA 8 HOH A 43 643 93 HOH HOH . BA 8 HOH A 44 644 3 HOH HOH . BA 8 HOH A 45 645 36 HOH HOH . BA 8 HOH A 46 646 11 HOH HOH . BA 8 HOH A 47 647 13 HOH HOH . BA 8 HOH A 48 648 80 HOH HOH . BA 8 HOH A 49 649 88 HOH HOH . BA 8 HOH A 50 650 2 HOH HOH . BA 8 HOH A 51 651 67 HOH HOH . BA 8 HOH A 52 652 75 HOH HOH . BA 8 HOH A 53 653 48 HOH HOH . BA 8 HOH A 54 654 58 HOH HOH . BA 8 HOH A 55 655 33 HOH HOH . BA 8 HOH A 56 656 43 HOH HOH . BA 8 HOH A 57 657 86 HOH HOH . BA 8 HOH A 58 658 29 HOH HOH . BA 8 HOH A 59 659 56 HOH HOH . BA 8 HOH A 60 660 45 HOH HOH . BA 8 HOH A 61 661 21 HOH HOH . BA 8 HOH A 62 662 82 HOH HOH . BA 8 HOH A 63 663 49 HOH HOH . BA 8 HOH A 64 664 34 HOH HOH . BA 8 HOH A 65 665 76 HOH HOH . BA 8 HOH A 66 666 91 HOH HOH . BA 8 HOH A 67 667 27 HOH HOH . BA 8 HOH A 68 668 1 HOH HOH . BA 8 HOH A 69 669 20 HOH HOH . BA 8 HOH A 70 670 51 HOH HOH . BA 8 HOH A 71 671 44 HOH HOH . BA 8 HOH A 72 672 24 HOH HOH . BA 8 HOH A 73 673 17 HOH HOH . BA 8 HOH A 74 674 64 HOH HOH . BA 8 HOH A 75 675 62 HOH HOH . BA 8 HOH A 76 676 37 HOH HOH . BA 8 HOH A 77 677 31 HOH HOH . BA 8 HOH A 78 678 57 HOH HOH . BA 8 HOH A 79 679 53 HOH HOH . BA 8 HOH A 80 680 79 HOH HOH . BA 8 HOH A 81 681 38 HOH HOH . BA 8 HOH A 82 682 41 HOH HOH . BA 8 HOH A 83 683 40 HOH HOH . BA 8 HOH A 84 684 15 HOH HOH . BA 8 HOH A 85 685 59 HOH HOH . BA 8 HOH A 86 686 42 HOH HOH . BA 8 HOH A 87 687 78 HOH HOH . BA 8 HOH A 88 688 66 HOH HOH . BA 8 HOH A 89 689 94 HOH HOH . BA 8 HOH A 90 690 72 HOH HOH . BA 8 HOH A 91 691 71 HOH HOH . BA 8 HOH A 92 692 55 HOH HOH . BA 8 HOH A 93 693 25 HOH HOH . BA 8 HOH A 94 694 73 HOH HOH . BA 8 HOH A 95 695 97 HOH HOH . BA 8 HOH A 96 696 77 HOH HOH . BA 8 HOH A 97 697 96 HOH HOH . BA 8 HOH A 98 698 65 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 22.619 _atom_site.Cartn_y 8.044 _atom_site.Cartn_z 18.628 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 65.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #