data_5OXQ # _model_server_result.job_id nZGvVFh2Avs_d7CT55BcUg _model_server_result.datetime_utc '2024-11-08 07:11:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oxq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 5OXQ # _exptl.entry_id 5OXQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OXQ _cell.length_a 102.21 _cell.length_b 110.05 _cell.length_c 109.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OXQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 316 A SER 316 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 A O PHE 319 A PHE 319 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc3 B NA NA . A NA 501 1_555 BA O HOH . A HOH 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 B NA NA . A NA 501 1_555 BA O HOH . A HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 217 n n N1 C6 EPE sing 218 n n N1 C9 EPE sing 219 n n C2 C3 EPE sing 220 n n C2 H21 EPE sing 221 n n C2 H22 EPE sing 222 n n C3 N4 EPE sing 223 n n C3 H31 EPE sing 224 n n C3 H32 EPE sing 225 n n N4 C5 EPE sing 226 n n N4 C7 EPE sing 227 n n C5 C6 EPE sing 228 n n C5 H51 EPE sing 229 n n C5 H52 EPE sing 230 n n C6 H61 EPE sing 231 n n C6 H62 EPE sing 232 n n C7 C8 EPE sing 233 n n C7 H71 EPE sing 234 n n C7 H72 EPE sing 235 n n C8 O8 EPE sing 236 n n C8 H81 EPE sing 237 n n C8 H82 EPE sing 238 n n O8 HO8 EPE sing 239 n n C9 C10 EPE sing 240 n n C9 H91 EPE sing 241 n n C9 H92 EPE sing 242 n n C10 S EPE sing 243 n n C10 H101 EPE sing 244 n n C10 H102 EPE sing 245 n n S O1S EPE doub 246 n n S O2S EPE doub 247 n n S O3S EPE sing 248 n n O3S HOS3 EPE sing 249 n n # _atom_sites.entry_id 5OXQ _atom_sites.fract_transf_matrix[1][1] 0.009784 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 1 NA NA . C 3 PO4 A 1 502 1 PO4 PO4 . D 3 PO4 A 1 503 2 PO4 PO4 . E 3 PO4 A 1 504 3 PO4 PO4 . F 3 PO4 A 1 505 4 PO4 PO4 . G 4 1PE A 1 506 5 1PE 1PE . H 5 EPE A 1 507 6 EPE EPE . I 5 EPE A 1 508 7 EPE EPE . J 6 78N A 1 509 1 78N 78N . K 7 78M A 1 510 2 78M 78M . L 6 78N A 1 511 3 78N 78N . M 7 78M A 1 512 4 78M 78M . N 6 78N A 1 513 5 78N 78N . O 6 78N A 1 514 6 78N 78N . P 6 78N A 1 515 7 78N 78N . Q 6 78N A 1 516 8 78N 78N . R 6 78N A 1 517 9 78N 78N . S 6 78N A 1 518 10 78N 78N . T 6 78N A 1 519 11 78N 78N . U 6 78N A 1 520 12 78N 78N . V 6 78N A 1 521 13 78N 78N . W 7 78M A 1 522 14 78M 78M . X 7 78M A 1 523 15 78M 78M . Y 6 78N A 1 524 16 78N 78N . Z 6 78N A 1 525 17 78N 78N . AA 6 78N A 1 526 18 78N 78N . BA 8 HOH A 1 601 60 HOH HOH . BA 8 HOH A 2 602 63 HOH HOH . BA 8 HOH A 3 603 6 HOH HOH . BA 8 HOH A 4 604 50 HOH HOH . BA 8 HOH A 5 605 26 HOH HOH . BA 8 HOH A 6 606 7 HOH HOH . BA 8 HOH A 7 607 69 HOH HOH . BA 8 HOH A 8 608 4 HOH HOH . BA 8 HOH A 9 609 81 HOH HOH . BA 8 HOH A 10 610 18 HOH HOH . BA 8 HOH A 11 611 98 HOH HOH . BA 8 HOH A 12 612 74 HOH HOH . BA 8 HOH A 13 613 47 HOH HOH . BA 8 HOH A 14 614 70 HOH HOH . BA 8 HOH A 15 615 39 HOH HOH . BA 8 HOH A 16 616 92 HOH HOH . BA 8 HOH A 17 617 83 HOH HOH . BA 8 HOH A 18 618 87 HOH HOH . BA 8 HOH A 19 619 28 HOH HOH . BA 8 HOH A 20 620 68 HOH HOH . BA 8 HOH A 21 621 32 HOH HOH . BA 8 HOH A 22 622 22 HOH HOH . BA 8 HOH A 23 623 95 HOH HOH . BA 8 HOH A 24 624 30 HOH HOH . BA 8 HOH A 25 625 8 HOH HOH . BA 8 HOH A 26 626 85 HOH HOH . BA 8 HOH A 27 627 90 HOH HOH . BA 8 HOH A 28 628 12 HOH HOH . BA 8 HOH A 29 629 46 HOH HOH . BA 8 HOH A 30 630 9 HOH HOH . BA 8 HOH A 31 631 89 HOH HOH . BA 8 HOH A 32 632 61 HOH HOH . BA 8 HOH A 33 633 5 HOH HOH . BA 8 HOH A 34 634 35 HOH HOH . BA 8 HOH A 35 635 19 HOH HOH . BA 8 HOH A 36 636 16 HOH HOH . BA 8 HOH A 37 637 10 HOH HOH . BA 8 HOH A 38 638 84 HOH HOH . BA 8 HOH A 39 639 14 HOH HOH . BA 8 HOH A 40 640 23 HOH HOH . BA 8 HOH A 41 641 54 HOH HOH . BA 8 HOH A 42 642 52 HOH HOH . BA 8 HOH A 43 643 93 HOH HOH . BA 8 HOH A 44 644 3 HOH HOH . BA 8 HOH A 45 645 36 HOH HOH . BA 8 HOH A 46 646 11 HOH HOH . BA 8 HOH A 47 647 13 HOH HOH . BA 8 HOH A 48 648 80 HOH HOH . BA 8 HOH A 49 649 88 HOH HOH . BA 8 HOH A 50 650 2 HOH HOH . BA 8 HOH A 51 651 67 HOH HOH . BA 8 HOH A 52 652 75 HOH HOH . BA 8 HOH A 53 653 48 HOH HOH . BA 8 HOH A 54 654 58 HOH HOH . BA 8 HOH A 55 655 33 HOH HOH . BA 8 HOH A 56 656 43 HOH HOH . BA 8 HOH A 57 657 86 HOH HOH . BA 8 HOH A 58 658 29 HOH HOH . BA 8 HOH A 59 659 56 HOH HOH . BA 8 HOH A 60 660 45 HOH HOH . BA 8 HOH A 61 661 21 HOH HOH . BA 8 HOH A 62 662 82 HOH HOH . BA 8 HOH A 63 663 49 HOH HOH . BA 8 HOH A 64 664 34 HOH HOH . BA 8 HOH A 65 665 76 HOH HOH . BA 8 HOH A 66 666 91 HOH HOH . BA 8 HOH A 67 667 27 HOH HOH . BA 8 HOH A 68 668 1 HOH HOH . BA 8 HOH A 69 669 20 HOH HOH . BA 8 HOH A 70 670 51 HOH HOH . BA 8 HOH A 71 671 44 HOH HOH . BA 8 HOH A 72 672 24 HOH HOH . BA 8 HOH A 73 673 17 HOH HOH . BA 8 HOH A 74 674 64 HOH HOH . BA 8 HOH A 75 675 62 HOH HOH . BA 8 HOH A 76 676 37 HOH HOH . BA 8 HOH A 77 677 31 HOH HOH . BA 8 HOH A 78 678 57 HOH HOH . BA 8 HOH A 79 679 53 HOH HOH . BA 8 HOH A 80 680 79 HOH HOH . BA 8 HOH A 81 681 38 HOH HOH . BA 8 HOH A 82 682 41 HOH HOH . BA 8 HOH A 83 683 40 HOH HOH . BA 8 HOH A 84 684 15 HOH HOH . BA 8 HOH A 85 685 59 HOH HOH . BA 8 HOH A 86 686 42 HOH HOH . BA 8 HOH A 87 687 78 HOH HOH . BA 8 HOH A 88 688 66 HOH HOH . BA 8 HOH A 89 689 94 HOH HOH . BA 8 HOH A 90 690 72 HOH HOH . BA 8 HOH A 91 691 71 HOH HOH . BA 8 HOH A 92 692 55 HOH HOH . BA 8 HOH A 93 693 25 HOH HOH . BA 8 HOH A 94 694 73 HOH HOH . BA 8 HOH A 95 695 97 HOH HOH . BA 8 HOH A 96 696 77 HOH HOH . BA 8 HOH A 97 697 96 HOH HOH . BA 8 HOH A 98 698 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . H 5 22.108 18.635 -1.515 1 62.02 ? N1 EPE 507 A 1 HETATM 2 C C2 EPE . . . H 5 22.942 19.487 -2.436 1 61.88 ? C2 EPE 507 A 1 HETATM 3 C C3 EPE . . . H 5 22.231 19.74 -3.759 1 62.27 ? C3 EPE 507 A 1 HETATM 4 N N4 EPE . . . H 5 22.026 18.441 -4.433 1 64.08 ? N4 EPE 507 A 1 HETATM 5 C C5 EPE . . . H 5 21.211 17.517 -3.555 1 62.76 ? C5 EPE 507 A 1 HETATM 6 C C6 EPE . . . H 5 21.951 17.31 -2.231 1 62.37 ? C6 EPE 507 A 1 HETATM 7 C C7 EPE . . . H 5 21.201 18.71 -5.642 1 67.04 ? C7 EPE 507 A 1 HETATM 8 C C8 EPE . . . H 5 22.089 19.194 -6.815 1 69.37 ? C8 EPE 507 A 1 HETATM 9 O O8 EPE . . . H 5 21.315 19.319 -7.999 1 70.26 ? O8 EPE 507 A 1 HETATM 10 C C9 EPE . . . H 5 22.916 18.365 -0.307 1 61.55 ? C9 EPE 507 A 1 HETATM 11 C C10 EPE . . . H 5 22.388 19.095 0.913 1 61.27 ? C10 EPE 507 A 1 HETATM 12 S S EPE . . . H 5 23.159 18.681 2.455 1 89.7 ? S EPE 507 A 1 HETATM 13 O O1S EPE . . . H 5 24.54 18.905 2.267 1 90.76 ? O1S EPE 507 A 1 HETATM 14 O O2S EPE . . . H 5 22.764 17.307 2.712 1 89.89 ? O2S EPE 507 A 1 HETATM 15 O O3S EPE . . . H 5 22.581 19.607 3.409 1 88.24 ? O3S EPE 507 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 15 #