data_5OXQ
#
_model_server_result.job_id            Bt_qg0osacQz99WoTvz2qA 
_model_server_result.datetime_utc      '2024-11-08 07:05:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oxq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":509}' 
#
_entry.id    5OXQ 
#
_exptl.entry_id    5OXQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OXQ 
_cell.length_a            102.21 
_cell.length_b            110.05 
_cell.length_c            109.5 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OXQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 L N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
? 6 R N N 
? 6 S N N 
? 6 T N N 
? 6 U N N 
? 6 V N N 
? 6 Y N N 
? 6 Z N N 
? 6 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 316 A SER 316 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc2 A O PHE 319 A PHE 319 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc3 B NA NA . A NA 501 1_555 BA O HOH . A HOH 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc4 B NA NA . A NA 501 1_555 BA O HOH . A HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL (2R)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O22 C19 78N sing 93 n n 
C19 C18 78N sing 94 n n 
C18 O20 78N sing 95 n n 
C18 C17 78N sing 96 n n 
C17 O16 78N sing 97 n n 
O16 C8 78N sing 98 n n 
C8 O15 78N doub 99 n n 
C8 C7 78N sing 100 n n 
C7 C6 78N sing 101 n n 
C6 C5 78N sing 102 n n 
C5 C4 78N sing 103 n n 
C4 C3 78N sing 104 n n 
C3 C2 78N sing 105 n n 
C2 C1 78N doub 106 z n 
C1 C9 78N sing 107 n n 
C9 C10 78N sing 108 n n 
C10 C11 78N sing 109 n n 
C11 C12 78N sing 110 n n 
C12 C13 78N sing 111 n n 
C13 C14 78N sing 112 n n 
C15 C14 78N sing 113 n n 
O22 H22 78N sing 114 n n 
C19 H191 78N sing 115 n n 
C19 H192 78N sing 116 n n 
C18 H18 78N sing 117 n n 
O20 H20 78N sing 118 n n 
C17 H171 78N sing 119 n n 
C17 H172 78N sing 120 n n 
C7 H71 78N sing 121 n n 
C7 H72 78N sing 122 n n 
C6 H61C 78N sing 123 n n 
C6 H62C 78N sing 124 n n 
C5 H51C 78N sing 125 n n 
C5 H52C 78N sing 126 n n 
C4 H41C 78N sing 127 n n 
C4 H42C 78N sing 128 n n 
C3 H31C 78N sing 129 n n 
C3 H32C 78N sing 130 n n 
C2 H2 78N sing 131 n n 
C1 H1 78N sing 132 n n 
C9 H91C 78N sing 133 n n 
C9 H92C 78N sing 134 n n 
C10 H101 78N sing 135 n n 
C10 H102 78N sing 136 n n 
C11 H111 78N sing 137 n n 
C11 H112 78N sing 138 n n 
C12 H121 78N sing 139 n n 
C12 H122 78N sing 140 n n 
C13 H131 78N sing 141 n n 
C13 H132 78N sing 142 n n 
C14 H141 78N sing 143 n n 
C14 H142 78N sing 144 n n 
C15 H151 78N sing 145 n n 
C15 H152 78N sing 146 n n 
C15 H153 78N sing 147 n n 
#
_atom_sites.entry_id                     5OXQ 
_atom_sites.fract_transf_matrix[1][1]    0.009784 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009087 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009132 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 501 1 NA NA . 
C 3 PO4 A 1 502 1 PO4 PO4 . 
D 3 PO4 A 1 503 2 PO4 PO4 . 
E 3 PO4 A 1 504 3 PO4 PO4 . 
F 3 PO4 A 1 505 4 PO4 PO4 . 
G 4 1PE A 1 506 5 1PE 1PE . 
H 5 EPE A 1 507 6 EPE EPE . 
I 5 EPE A 1 508 7 EPE EPE . 
J 6 78N A 1 509 1 78N 78N . 
K 7 78M A 1 510 2 78M 78M . 
L 6 78N A 1 511 3 78N 78N . 
M 7 78M A 1 512 4 78M 78M . 
N 6 78N A 1 513 5 78N 78N . 
O 6 78N A 1 514 6 78N 78N . 
P 6 78N A 1 515 7 78N 78N . 
Q 6 78N A 1 516 8 78N 78N . 
R 6 78N A 1 517 9 78N 78N . 
S 6 78N A 1 518 10 78N 78N . 
T 6 78N A 1 519 11 78N 78N . 
U 6 78N A 1 520 12 78N 78N . 
V 6 78N A 1 521 13 78N 78N . 
W 7 78M A 1 522 14 78M 78M . 
X 7 78M A 1 523 15 78M 78M . 
Y 6 78N A 1 524 16 78N 78N . 
Z 6 78N A 1 525 17 78N 78N . 
AA 6 78N A 1 526 18 78N 78N . 
BA 8 HOH A 1 601 60 HOH HOH . 
BA 8 HOH A 2 602 63 HOH HOH . 
BA 8 HOH A 3 603 6 HOH HOH . 
BA 8 HOH A 4 604 50 HOH HOH . 
BA 8 HOH A 5 605 26 HOH HOH . 
BA 8 HOH A 6 606 7 HOH HOH . 
BA 8 HOH A 7 607 69 HOH HOH . 
BA 8 HOH A 8 608 4 HOH HOH . 
BA 8 HOH A 9 609 81 HOH HOH . 
BA 8 HOH A 10 610 18 HOH HOH . 
BA 8 HOH A 11 611 98 HOH HOH . 
BA 8 HOH A 12 612 74 HOH HOH . 
BA 8 HOH A 13 613 47 HOH HOH . 
BA 8 HOH A 14 614 70 HOH HOH . 
BA 8 HOH A 15 615 39 HOH HOH . 
BA 8 HOH A 16 616 92 HOH HOH . 
BA 8 HOH A 17 617 83 HOH HOH . 
BA 8 HOH A 18 618 87 HOH HOH . 
BA 8 HOH A 19 619 28 HOH HOH . 
BA 8 HOH A 20 620 68 HOH HOH . 
BA 8 HOH A 21 621 32 HOH HOH . 
BA 8 HOH A 22 622 22 HOH HOH . 
BA 8 HOH A 23 623 95 HOH HOH . 
BA 8 HOH A 24 624 30 HOH HOH . 
BA 8 HOH A 25 625 8 HOH HOH . 
BA 8 HOH A 26 626 85 HOH HOH . 
BA 8 HOH A 27 627 90 HOH HOH . 
BA 8 HOH A 28 628 12 HOH HOH . 
BA 8 HOH A 29 629 46 HOH HOH . 
BA 8 HOH A 30 630 9 HOH HOH . 
BA 8 HOH A 31 631 89 HOH HOH . 
BA 8 HOH A 32 632 61 HOH HOH . 
BA 8 HOH A 33 633 5 HOH HOH . 
BA 8 HOH A 34 634 35 HOH HOH . 
BA 8 HOH A 35 635 19 HOH HOH . 
BA 8 HOH A 36 636 16 HOH HOH . 
BA 8 HOH A 37 637 10 HOH HOH . 
BA 8 HOH A 38 638 84 HOH HOH . 
BA 8 HOH A 39 639 14 HOH HOH . 
BA 8 HOH A 40 640 23 HOH HOH . 
BA 8 HOH A 41 641 54 HOH HOH . 
BA 8 HOH A 42 642 52 HOH HOH . 
BA 8 HOH A 43 643 93 HOH HOH . 
BA 8 HOH A 44 644 3 HOH HOH . 
BA 8 HOH A 45 645 36 HOH HOH . 
BA 8 HOH A 46 646 11 HOH HOH . 
BA 8 HOH A 47 647 13 HOH HOH . 
BA 8 HOH A 48 648 80 HOH HOH . 
BA 8 HOH A 49 649 88 HOH HOH . 
BA 8 HOH A 50 650 2 HOH HOH . 
BA 8 HOH A 51 651 67 HOH HOH . 
BA 8 HOH A 52 652 75 HOH HOH . 
BA 8 HOH A 53 653 48 HOH HOH . 
BA 8 HOH A 54 654 58 HOH HOH . 
BA 8 HOH A 55 655 33 HOH HOH . 
BA 8 HOH A 56 656 43 HOH HOH . 
BA 8 HOH A 57 657 86 HOH HOH . 
BA 8 HOH A 58 658 29 HOH HOH . 
BA 8 HOH A 59 659 56 HOH HOH . 
BA 8 HOH A 60 660 45 HOH HOH . 
BA 8 HOH A 61 661 21 HOH HOH . 
BA 8 HOH A 62 662 82 HOH HOH . 
BA 8 HOH A 63 663 49 HOH HOH . 
BA 8 HOH A 64 664 34 HOH HOH . 
BA 8 HOH A 65 665 76 HOH HOH . 
BA 8 HOH A 66 666 91 HOH HOH . 
BA 8 HOH A 67 667 27 HOH HOH . 
BA 8 HOH A 68 668 1 HOH HOH . 
BA 8 HOH A 69 669 20 HOH HOH . 
BA 8 HOH A 70 670 51 HOH HOH . 
BA 8 HOH A 71 671 44 HOH HOH . 
BA 8 HOH A 72 672 24 HOH HOH . 
BA 8 HOH A 73 673 17 HOH HOH . 
BA 8 HOH A 74 674 64 HOH HOH . 
BA 8 HOH A 75 675 62 HOH HOH . 
BA 8 HOH A 76 676 37 HOH HOH . 
BA 8 HOH A 77 677 31 HOH HOH . 
BA 8 HOH A 78 678 57 HOH HOH . 
BA 8 HOH A 79 679 53 HOH HOH . 
BA 8 HOH A 80 680 79 HOH HOH . 
BA 8 HOH A 81 681 38 HOH HOH . 
BA 8 HOH A 82 682 41 HOH HOH . 
BA 8 HOH A 83 683 40 HOH HOH . 
BA 8 HOH A 84 684 15 HOH HOH . 
BA 8 HOH A 85 685 59 HOH HOH . 
BA 8 HOH A 86 686 42 HOH HOH . 
BA 8 HOH A 87 687 78 HOH HOH . 
BA 8 HOH A 88 688 66 HOH HOH . 
BA 8 HOH A 89 689 94 HOH HOH . 
BA 8 HOH A 90 690 72 HOH HOH . 
BA 8 HOH A 91 691 71 HOH HOH . 
BA 8 HOH A 92 692 55 HOH HOH . 
BA 8 HOH A 93 693 25 HOH HOH . 
BA 8 HOH A 94 694 73 HOH HOH . 
BA 8 HOH A 95 695 97 HOH HOH . 
BA 8 HOH A 96 696 77 HOH HOH . 
BA 8 HOH A 97 697 96 HOH HOH . 
BA 8 HOH A 98 698 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O22 78N . . . J 6 8.923 30.182 21.432 1 78.42 ? O22 78N 509 A 1 
HETATM 2 C C19 78N . . . J 6 7.721 29.365 21.362 1 78.53 ? C19 78N 509 A 1 
HETATM 3 C C18 78N . . . J 6 6.475 30.161 20.89 1 69.65 ? C18 78N 509 A 1 
HETATM 4 O O20 78N . . . J 6 6.19 31.229 21.802 1 72.18 ? O20 78N 509 A 1 
HETATM 5 C C17 78N . . . J 6 6.671 30.711 19.484 1 67.63 ? C17 78N 509 A 1 
HETATM 6 O O16 78N . . . J 6 5.638 30.215 18.656 1 67.27 ? O16 78N 509 A 1 
HETATM 7 C C8 78N . . . J 6 5.992 29.941 17.309 1 67.41 ? C8 78N 509 A 1 
HETATM 8 O O15 78N . . . J 6 6.671 30.707 16.687 1 69.13 ? O15 78N 509 A 1 
HETATM 9 C C7 78N . . . J 6 5.514 28.68 16.615 1 65.26 ? C7 78N 509 A 1 
HETATM 10 C C6 78N . . . J 6 5.617 28.894 15.1 1 63.9 ? C6 78N 509 A 1 
HETATM 11 C C5 78N . . . J 6 4.978 27.665 14.372 1 55.13 ? C5 78N 509 A 1 
HETATM 12 C C4 78N . . . J 6 4.867 27.997 12.89 1 56.53 ? C4 78N 509 A 1 
HETATM 13 C C3 78N . . . J 6 4.242 26.78 12.195 1 57.95 ? C3 78N 509 A 1 
HETATM 14 C C2 78N . . . J 6 3.165 27.235 11.235 1 59.35 ? C2 78N 509 A 1 
HETATM 15 C C1 78N . . . J 6 2.783 26.384 10.243 1 60.15 ? C1 78N 509 A 1 
HETATM 16 C C9 78N . . . J 6 3.479 24.991 10.145 1 67.83 ? C9 78N 509 A 1 
HETATM 17 C C10 78N . . . J 6 3.125 24.321 8.819 1 68.08 ? C10 78N 509 A 1 
HETATM 18 C C11 78N . . . J 6 4.281 23.403 8.4 1 68.34 ? C11 78N 509 A 1 
HETATM 19 C C12 78N . . . J 6 3.727 22.071 7.822 1 75.18 ? C12 78N 509 A 1 
HETATM 20 C C13 78N . . . J 6 2.666 22.391 6.776 1 75.63 ? C13 78N 509 A 1 
HETATM 21 C C15 78N . . . J 6 1.666 21.696 4.593 1 77.22 ? C15 78N 509 A 1 
HETATM 22 C C14 78N . . . J 6 2.498 21.209 5.793 1 76.42 ? C14 78N 509 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#