data_5OXQ
#
_model_server_result.job_id            Mie_eIbCRYYRs1LtYTaqYQ 
_model_server_result.datetime_utc      '2024-11-27 09:16:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oxq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":512}' 
#
_entry.id    5OXQ 
#
_exptl.entry_id    5OXQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OXQ 
_cell.length_a            102.21 
_cell.length_b            110.05 
_cell.length_c            109.5 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OXQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 K N N 
? 7 M N N 
? 7 W N N 
? 7 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 316 A SER 316 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc2 A O PHE 319 A PHE 319 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc3 B NA NA . A NA 501 1_555 BA O HOH . A HOH 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc4 B NA NA . A NA 501 1_555 BA O HOH . A HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C20 78M sing 38 n n 
C20 C18 78M sing 39 n n 
C18 O19 78M sing 40 n n 
C18 C17 78M sing 41 n n 
C17 O2 78M sing 42 n n 
O2 C1 78M sing 43 n n 
C1 O1 78M doub 44 n n 
C1 C2 78M sing 45 n n 
C2 C3 78M sing 46 n n 
C3 C4 78M sing 47 n n 
C4 C5 78M sing 48 n n 
C5 C6 78M sing 49 n n 
C6 C7 78M sing 50 n n 
C7 C8 78M doub 51 z n 
C8 C9 78M sing 52 n n 
C9 C10 78M sing 53 n n 
C10 C11 78M sing 54 n n 
C11 C12 78M sing 55 n n 
C12 C13 78M sing 56 n n 
C15 C14 78M sing 57 n n 
C13 C14 78M sing 58 n n 
O21 H21 78M sing 59 n n 
C20 H201 78M sing 60 n n 
C20 H202 78M sing 61 n n 
C18 H18 78M sing 62 n n 
O19 H19 78M sing 63 n n 
C17 H171 78M sing 64 n n 
C17 H172 78M sing 65 n n 
C2 H21C 78M sing 66 n n 
C2 H22C 78M sing 67 n n 
C3 H31C 78M sing 68 n n 
C3 H32C 78M sing 69 n n 
C4 H41C 78M sing 70 n n 
C4 H42C 78M sing 71 n n 
C5 H51C 78M sing 72 n n 
C5 H52C 78M sing 73 n n 
C6 H61C 78M sing 74 n n 
C6 H62C 78M sing 75 n n 
C7 H7 78M sing 76 n n 
C8 H8 78M sing 77 n n 
C9 H91C 78M sing 78 n n 
C9 H92C 78M sing 79 n n 
C10 H101 78M sing 80 n n 
C10 H102 78M sing 81 n n 
C11 H111 78M sing 82 n n 
C11 H112 78M sing 83 n n 
C12 H121 78M sing 84 n n 
C12 H122 78M sing 85 n n 
C13 H131 78M sing 86 n n 
C13 H132 78M sing 87 n n 
C15 H151 78M sing 88 n n 
C15 H152 78M sing 89 n n 
C15 H153 78M sing 90 n n 
C14 H141 78M sing 91 n n 
C14 H142 78M sing 92 n n 
#
_atom_sites.entry_id                     5OXQ 
_atom_sites.fract_transf_matrix[1][1]    0.009784 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009087 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009132 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 501 1 NA NA . 
C 3 PO4 A 1 502 1 PO4 PO4 . 
D 3 PO4 A 1 503 2 PO4 PO4 . 
E 3 PO4 A 1 504 3 PO4 PO4 . 
F 3 PO4 A 1 505 4 PO4 PO4 . 
G 4 1PE A 1 506 5 1PE 1PE . 
H 5 EPE A 1 507 6 EPE EPE . 
I 5 EPE A 1 508 7 EPE EPE . 
J 6 78N A 1 509 1 78N 78N . 
K 7 78M A 1 510 2 78M 78M . 
L 6 78N A 1 511 3 78N 78N . 
M 7 78M A 1 512 4 78M 78M . 
N 6 78N A 1 513 5 78N 78N . 
O 6 78N A 1 514 6 78N 78N . 
P 6 78N A 1 515 7 78N 78N . 
Q 6 78N A 1 516 8 78N 78N . 
R 6 78N A 1 517 9 78N 78N . 
S 6 78N A 1 518 10 78N 78N . 
T 6 78N A 1 519 11 78N 78N . 
U 6 78N A 1 520 12 78N 78N . 
V 6 78N A 1 521 13 78N 78N . 
W 7 78M A 1 522 14 78M 78M . 
X 7 78M A 1 523 15 78M 78M . 
Y 6 78N A 1 524 16 78N 78N . 
Z 6 78N A 1 525 17 78N 78N . 
AA 6 78N A 1 526 18 78N 78N . 
BA 8 HOH A 1 601 60 HOH HOH . 
BA 8 HOH A 2 602 63 HOH HOH . 
BA 8 HOH A 3 603 6 HOH HOH . 
BA 8 HOH A 4 604 50 HOH HOH . 
BA 8 HOH A 5 605 26 HOH HOH . 
BA 8 HOH A 6 606 7 HOH HOH . 
BA 8 HOH A 7 607 69 HOH HOH . 
BA 8 HOH A 8 608 4 HOH HOH . 
BA 8 HOH A 9 609 81 HOH HOH . 
BA 8 HOH A 10 610 18 HOH HOH . 
BA 8 HOH A 11 611 98 HOH HOH . 
BA 8 HOH A 12 612 74 HOH HOH . 
BA 8 HOH A 13 613 47 HOH HOH . 
BA 8 HOH A 14 614 70 HOH HOH . 
BA 8 HOH A 15 615 39 HOH HOH . 
BA 8 HOH A 16 616 92 HOH HOH . 
BA 8 HOH A 17 617 83 HOH HOH . 
BA 8 HOH A 18 618 87 HOH HOH . 
BA 8 HOH A 19 619 28 HOH HOH . 
BA 8 HOH A 20 620 68 HOH HOH . 
BA 8 HOH A 21 621 32 HOH HOH . 
BA 8 HOH A 22 622 22 HOH HOH . 
BA 8 HOH A 23 623 95 HOH HOH . 
BA 8 HOH A 24 624 30 HOH HOH . 
BA 8 HOH A 25 625 8 HOH HOH . 
BA 8 HOH A 26 626 85 HOH HOH . 
BA 8 HOH A 27 627 90 HOH HOH . 
BA 8 HOH A 28 628 12 HOH HOH . 
BA 8 HOH A 29 629 46 HOH HOH . 
BA 8 HOH A 30 630 9 HOH HOH . 
BA 8 HOH A 31 631 89 HOH HOH . 
BA 8 HOH A 32 632 61 HOH HOH . 
BA 8 HOH A 33 633 5 HOH HOH . 
BA 8 HOH A 34 634 35 HOH HOH . 
BA 8 HOH A 35 635 19 HOH HOH . 
BA 8 HOH A 36 636 16 HOH HOH . 
BA 8 HOH A 37 637 10 HOH HOH . 
BA 8 HOH A 38 638 84 HOH HOH . 
BA 8 HOH A 39 639 14 HOH HOH . 
BA 8 HOH A 40 640 23 HOH HOH . 
BA 8 HOH A 41 641 54 HOH HOH . 
BA 8 HOH A 42 642 52 HOH HOH . 
BA 8 HOH A 43 643 93 HOH HOH . 
BA 8 HOH A 44 644 3 HOH HOH . 
BA 8 HOH A 45 645 36 HOH HOH . 
BA 8 HOH A 46 646 11 HOH HOH . 
BA 8 HOH A 47 647 13 HOH HOH . 
BA 8 HOH A 48 648 80 HOH HOH . 
BA 8 HOH A 49 649 88 HOH HOH . 
BA 8 HOH A 50 650 2 HOH HOH . 
BA 8 HOH A 51 651 67 HOH HOH . 
BA 8 HOH A 52 652 75 HOH HOH . 
BA 8 HOH A 53 653 48 HOH HOH . 
BA 8 HOH A 54 654 58 HOH HOH . 
BA 8 HOH A 55 655 33 HOH HOH . 
BA 8 HOH A 56 656 43 HOH HOH . 
BA 8 HOH A 57 657 86 HOH HOH . 
BA 8 HOH A 58 658 29 HOH HOH . 
BA 8 HOH A 59 659 56 HOH HOH . 
BA 8 HOH A 60 660 45 HOH HOH . 
BA 8 HOH A 61 661 21 HOH HOH . 
BA 8 HOH A 62 662 82 HOH HOH . 
BA 8 HOH A 63 663 49 HOH HOH . 
BA 8 HOH A 64 664 34 HOH HOH . 
BA 8 HOH A 65 665 76 HOH HOH . 
BA 8 HOH A 66 666 91 HOH HOH . 
BA 8 HOH A 67 667 27 HOH HOH . 
BA 8 HOH A 68 668 1 HOH HOH . 
BA 8 HOH A 69 669 20 HOH HOH . 
BA 8 HOH A 70 670 51 HOH HOH . 
BA 8 HOH A 71 671 44 HOH HOH . 
BA 8 HOH A 72 672 24 HOH HOH . 
BA 8 HOH A 73 673 17 HOH HOH . 
BA 8 HOH A 74 674 64 HOH HOH . 
BA 8 HOH A 75 675 62 HOH HOH . 
BA 8 HOH A 76 676 37 HOH HOH . 
BA 8 HOH A 77 677 31 HOH HOH . 
BA 8 HOH A 78 678 57 HOH HOH . 
BA 8 HOH A 79 679 53 HOH HOH . 
BA 8 HOH A 80 680 79 HOH HOH . 
BA 8 HOH A 81 681 38 HOH HOH . 
BA 8 HOH A 82 682 41 HOH HOH . 
BA 8 HOH A 83 683 40 HOH HOH . 
BA 8 HOH A 84 684 15 HOH HOH . 
BA 8 HOH A 85 685 59 HOH HOH . 
BA 8 HOH A 86 686 42 HOH HOH . 
BA 8 HOH A 87 687 78 HOH HOH . 
BA 8 HOH A 88 688 66 HOH HOH . 
BA 8 HOH A 89 689 94 HOH HOH . 
BA 8 HOH A 90 690 72 HOH HOH . 
BA 8 HOH A 91 691 71 HOH HOH . 
BA 8 HOH A 92 692 55 HOH HOH . 
BA 8 HOH A 93 693 25 HOH HOH . 
BA 8 HOH A 94 694 73 HOH HOH . 
BA 8 HOH A 95 695 97 HOH HOH . 
BA 8 HOH A 96 696 77 HOH HOH . 
BA 8 HOH A 97 697 96 HOH HOH . 
BA 8 HOH A 98 698 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 78M . . . M 7 5.491 12.314 18.613 1 85.97 ? O21 78M 512 A 1 
HETATM 2 C C20 78M . . . M 7 5.671 11.613 17.362 1 84.58 ? C20 78M 512 A 1 
HETATM 3 C C18 78M . . . M 7 4.822 12.3 16.303 1 83.44 ? C18 78M 512 A 1 
HETATM 4 O O19 78M . . . M 7 4.577 11.383 15.306 1 83.9 ? O19 78M 512 A 1 
HETATM 5 C C17 78M . . . M 7 5.552 13.469 15.682 1 82.61 ? C17 78M 512 A 1 
HETATM 6 O O2 78M . . . M 7 5.098 13.505 14.345 1 82.27 ? O2 78M 512 A 1 
HETATM 7 C C1 78M . . . M 7 5.537 14.581 13.528 1 81.29 ? C1 78M 512 A 1 
HETATM 8 O O1 78M . . . M 7 6.596 15.135 13.779 1 82.49 ? O1 78M 512 A 1 
HETATM 9 C C2 78M . . . M 7 4.702 15.044 12.314 1 79.24 ? C2 78M 512 A 1 
HETATM 10 C C3 78M . . . M 7 5.653 15.732 11.363 1 78.27 ? C3 78M 512 A 1 
HETATM 11 C C4 78M . . . M 7 5.374 15.262 9.9 1 71.2 ? C4 78M 512 A 1 
HETATM 12 C C5 78M . . . M 7 4.292 16.164 9.309 1 71.89 ? C5 78M 512 A 1 
HETATM 13 C C6 78M . . . M 7 4.809 16.834 8.033 1 72.19 ? C6 78M 512 A 1 
HETATM 14 C C7 78M . . . M 7 4.934 15.787 6.89 1 55.87 ? C7 78M 512 A 1 
HETATM 15 C C8 78M . . . M 7 4.947 16.196 5.563 1 55.49 ? C8 78M 512 A 1 
HETATM 16 C C9 78M . . . M 7 5.068 15.164 4.482 1 55.35 ? C9 78M 512 A 1 
HETATM 17 C C10 78M . . . M 7 4.483 15.677 3.135 1 74.69 ? C10 78M 512 A 1 
HETATM 18 C C11 78M . . . M 7 5.403 15.202 1.949 1 88.89 ? C11 78M 512 A 1 
HETATM 19 C C12 78M . . . M 7 4.601 14.368 0.928 1 89.09 ? C12 78M 512 A 1 
HETATM 20 C C13 78M . . . M 7 3.392 15.207 0.365 1 100.63 ? C13 78M 512 A 1 
HETATM 21 C C15 78M . . . M 7 2.568 13.905 -1.623 1 100.1 ? C15 78M 512 A 1 
HETATM 22 C C14 78M . . . M 7 3.366 15.137 -1.177 1 100.4 ? C14 78M 512 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           22 
#