data_5OXQ # _model_server_result.job_id wlzzuaTgYqVm9ukZ7rzDiw _model_server_result.datetime_utc '2024-11-08 06:38:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oxq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":520}' # _entry.id 5OXQ # _exptl.entry_id 5OXQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OXQ _cell.length_a 102.21 _cell.length_b 110.05 _cell.length_c 109.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OXQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 L N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 U N N ? 6 V N N ? 6 Y N N ? 6 Z N N ? 6 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 316 A SER 316 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 A O PHE 319 A PHE 319 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc3 B NA NA . A NA 501 1_555 BA O HOH . A HOH 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 B NA NA . A NA 501 1_555 BA O HOH . A HOH 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78N _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL (2R)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C19 78N sing 93 n n C19 C18 78N sing 94 n n C18 O20 78N sing 95 n n C18 C17 78N sing 96 n n C17 O16 78N sing 97 n n O16 C8 78N sing 98 n n C8 O15 78N doub 99 n n C8 C7 78N sing 100 n n C7 C6 78N sing 101 n n C6 C5 78N sing 102 n n C5 C4 78N sing 103 n n C4 C3 78N sing 104 n n C3 C2 78N sing 105 n n C2 C1 78N doub 106 z n C1 C9 78N sing 107 n n C9 C10 78N sing 108 n n C10 C11 78N sing 109 n n C11 C12 78N sing 110 n n C12 C13 78N sing 111 n n C13 C14 78N sing 112 n n C15 C14 78N sing 113 n n O22 H22 78N sing 114 n n C19 H191 78N sing 115 n n C19 H192 78N sing 116 n n C18 H18 78N sing 117 n n O20 H20 78N sing 118 n n C17 H171 78N sing 119 n n C17 H172 78N sing 120 n n C7 H71 78N sing 121 n n C7 H72 78N sing 122 n n C6 H61C 78N sing 123 n n C6 H62C 78N sing 124 n n C5 H51C 78N sing 125 n n C5 H52C 78N sing 126 n n C4 H41C 78N sing 127 n n C4 H42C 78N sing 128 n n C3 H31C 78N sing 129 n n C3 H32C 78N sing 130 n n C2 H2 78N sing 131 n n C1 H1 78N sing 132 n n C9 H91C 78N sing 133 n n C9 H92C 78N sing 134 n n C10 H101 78N sing 135 n n C10 H102 78N sing 136 n n C11 H111 78N sing 137 n n C11 H112 78N sing 138 n n C12 H121 78N sing 139 n n C12 H122 78N sing 140 n n C13 H131 78N sing 141 n n C13 H132 78N sing 142 n n C14 H141 78N sing 143 n n C14 H142 78N sing 144 n n C15 H151 78N sing 145 n n C15 H152 78N sing 146 n n C15 H153 78N sing 147 n n # _atom_sites.entry_id 5OXQ _atom_sites.fract_transf_matrix[1][1] 0.009784 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 501 1 NA NA . C 3 PO4 A 1 502 1 PO4 PO4 . D 3 PO4 A 1 503 2 PO4 PO4 . E 3 PO4 A 1 504 3 PO4 PO4 . F 3 PO4 A 1 505 4 PO4 PO4 . G 4 1PE A 1 506 5 1PE 1PE . H 5 EPE A 1 507 6 EPE EPE . I 5 EPE A 1 508 7 EPE EPE . J 6 78N A 1 509 1 78N 78N . K 7 78M A 1 510 2 78M 78M . L 6 78N A 1 511 3 78N 78N . M 7 78M A 1 512 4 78M 78M . N 6 78N A 1 513 5 78N 78N . O 6 78N A 1 514 6 78N 78N . P 6 78N A 1 515 7 78N 78N . Q 6 78N A 1 516 8 78N 78N . R 6 78N A 1 517 9 78N 78N . S 6 78N A 1 518 10 78N 78N . T 6 78N A 1 519 11 78N 78N . U 6 78N A 1 520 12 78N 78N . V 6 78N A 1 521 13 78N 78N . W 7 78M A 1 522 14 78M 78M . X 7 78M A 1 523 15 78M 78M . Y 6 78N A 1 524 16 78N 78N . Z 6 78N A 1 525 17 78N 78N . AA 6 78N A 1 526 18 78N 78N . BA 8 HOH A 1 601 60 HOH HOH . BA 8 HOH A 2 602 63 HOH HOH . BA 8 HOH A 3 603 6 HOH HOH . BA 8 HOH A 4 604 50 HOH HOH . BA 8 HOH A 5 605 26 HOH HOH . BA 8 HOH A 6 606 7 HOH HOH . BA 8 HOH A 7 607 69 HOH HOH . BA 8 HOH A 8 608 4 HOH HOH . BA 8 HOH A 9 609 81 HOH HOH . BA 8 HOH A 10 610 18 HOH HOH . BA 8 HOH A 11 611 98 HOH HOH . BA 8 HOH A 12 612 74 HOH HOH . BA 8 HOH A 13 613 47 HOH HOH . BA 8 HOH A 14 614 70 HOH HOH . BA 8 HOH A 15 615 39 HOH HOH . BA 8 HOH A 16 616 92 HOH HOH . BA 8 HOH A 17 617 83 HOH HOH . BA 8 HOH A 18 618 87 HOH HOH . BA 8 HOH A 19 619 28 HOH HOH . BA 8 HOH A 20 620 68 HOH HOH . BA 8 HOH A 21 621 32 HOH HOH . BA 8 HOH A 22 622 22 HOH HOH . BA 8 HOH A 23 623 95 HOH HOH . BA 8 HOH A 24 624 30 HOH HOH . BA 8 HOH A 25 625 8 HOH HOH . BA 8 HOH A 26 626 85 HOH HOH . BA 8 HOH A 27 627 90 HOH HOH . BA 8 HOH A 28 628 12 HOH HOH . BA 8 HOH A 29 629 46 HOH HOH . BA 8 HOH A 30 630 9 HOH HOH . BA 8 HOH A 31 631 89 HOH HOH . BA 8 HOH A 32 632 61 HOH HOH . BA 8 HOH A 33 633 5 HOH HOH . BA 8 HOH A 34 634 35 HOH HOH . BA 8 HOH A 35 635 19 HOH HOH . BA 8 HOH A 36 636 16 HOH HOH . BA 8 HOH A 37 637 10 HOH HOH . BA 8 HOH A 38 638 84 HOH HOH . BA 8 HOH A 39 639 14 HOH HOH . BA 8 HOH A 40 640 23 HOH HOH . BA 8 HOH A 41 641 54 HOH HOH . BA 8 HOH A 42 642 52 HOH HOH . BA 8 HOH A 43 643 93 HOH HOH . BA 8 HOH A 44 644 3 HOH HOH . BA 8 HOH A 45 645 36 HOH HOH . BA 8 HOH A 46 646 11 HOH HOH . BA 8 HOH A 47 647 13 HOH HOH . BA 8 HOH A 48 648 80 HOH HOH . BA 8 HOH A 49 649 88 HOH HOH . BA 8 HOH A 50 650 2 HOH HOH . BA 8 HOH A 51 651 67 HOH HOH . BA 8 HOH A 52 652 75 HOH HOH . BA 8 HOH A 53 653 48 HOH HOH . BA 8 HOH A 54 654 58 HOH HOH . BA 8 HOH A 55 655 33 HOH HOH . BA 8 HOH A 56 656 43 HOH HOH . BA 8 HOH A 57 657 86 HOH HOH . BA 8 HOH A 58 658 29 HOH HOH . BA 8 HOH A 59 659 56 HOH HOH . BA 8 HOH A 60 660 45 HOH HOH . BA 8 HOH A 61 661 21 HOH HOH . BA 8 HOH A 62 662 82 HOH HOH . BA 8 HOH A 63 663 49 HOH HOH . BA 8 HOH A 64 664 34 HOH HOH . BA 8 HOH A 65 665 76 HOH HOH . BA 8 HOH A 66 666 91 HOH HOH . BA 8 HOH A 67 667 27 HOH HOH . BA 8 HOH A 68 668 1 HOH HOH . BA 8 HOH A 69 669 20 HOH HOH . BA 8 HOH A 70 670 51 HOH HOH . BA 8 HOH A 71 671 44 HOH HOH . BA 8 HOH A 72 672 24 HOH HOH . BA 8 HOH A 73 673 17 HOH HOH . BA 8 HOH A 74 674 64 HOH HOH . BA 8 HOH A 75 675 62 HOH HOH . BA 8 HOH A 76 676 37 HOH HOH . BA 8 HOH A 77 677 31 HOH HOH . BA 8 HOH A 78 678 57 HOH HOH . BA 8 HOH A 79 679 53 HOH HOH . BA 8 HOH A 80 680 79 HOH HOH . BA 8 HOH A 81 681 38 HOH HOH . BA 8 HOH A 82 682 41 HOH HOH . BA 8 HOH A 83 683 40 HOH HOH . BA 8 HOH A 84 684 15 HOH HOH . BA 8 HOH A 85 685 59 HOH HOH . BA 8 HOH A 86 686 42 HOH HOH . BA 8 HOH A 87 687 78 HOH HOH . BA 8 HOH A 88 688 66 HOH HOH . BA 8 HOH A 89 689 94 HOH HOH . BA 8 HOH A 90 690 72 HOH HOH . BA 8 HOH A 91 691 71 HOH HOH . BA 8 HOH A 92 692 55 HOH HOH . BA 8 HOH A 93 693 25 HOH HOH . BA 8 HOH A 94 694 73 HOH HOH . BA 8 HOH A 95 695 97 HOH HOH . BA 8 HOH A 96 696 77 HOH HOH . BA 8 HOH A 97 697 96 HOH HOH . BA 8 HOH A 98 698 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O22 78N . . . U 6 38.781 39.568 14.394 1 89.66 ? O22 78N 520 A 1 HETATM 2 C C19 78N . . . U 6 37.357 39.74 14.596 1 89.66 ? C19 78N 520 A 1 HETATM 3 C C18 78N . . . U 6 36.65 39.743 13.227 1 89.25 ? C18 78N 520 A 1 HETATM 4 O O20 78N . . . U 6 35.248 39.545 13.41 1 90.25 ? O20 78N 520 A 1 HETATM 5 C C17 78N . . . U 6 36.879 41.081 12.553 1 87.97 ? C17 78N 520 A 1 HETATM 6 O O16 78N . . . U 6 35.657 41.538 12.014 1 86.98 ? O16 78N 520 A 1 HETATM 7 C C8 78N . . . U 6 35.358 41.035 10.724 1 86.33 ? C8 78N 520 A 1 HETATM 8 O O15 78N . . . U 6 34.412 40.329 10.57 1 87.04 ? O15 78N 520 A 1 HETATM 9 C C7 78N . . . U 6 36.225 41.379 9.531 1 85.13 ? C7 78N 520 A 1 HETATM 10 C C6 78N . . . U 6 35.44 41.18 8.224 1 84.44 ? C6 78N 520 A 1 HETATM 11 C C5 78N . . . U 6 36.446 41.392 7.03 1 75.67 ? C5 78N 520 A 1 HETATM 12 C C4 78N . . . U 6 35.654 41.448 5.726 1 76.1 ? C4 78N 520 A 1 HETATM 13 C C3 78N . . . U 6 36.616 41.641 4.535 1 76.66 ? C3 78N 520 A 1 HETATM 14 C C2 78N . . . U 6 36.765 43.13 4.3 1 77.46 ? C2 78N 520 A 1 HETATM 15 C C1 78N . . . U 6 36.844 43.618 3.034 1 78.05 ? C1 78N 520 A 1 HETATM 16 C C9 78N . . . U 6 36.794 42.659 1.802 1 79.48 ? C9 78N 520 A 1 HETATM 17 C C10 78N . . . U 6 36.508 43.459 0.529 1 79.27 ? C10 78N 520 A 1 HETATM 18 C C11 78N . . . U 6 37.807 44.057 -0.029 1 79.71 ? C11 78N 520 A 1 HETATM 19 C C12 78N . . . U 6 38.076 45.474 0.577 1 88.46 ? C12 78N 520 A 1 HETATM 20 C C13 78N . . . U 6 39.017 46.304 -0.308 1 87.81 ? C13 78N 520 A 1 HETATM 21 C C15 78N . . . U 6 38.832 47.668 -2.425 1 86.91 ? C15 78N 520 A 1 HETATM 22 C C14 78N . . . U 6 38.455 46.345 -1.749 1 87.19 ? C14 78N 520 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #