data_5OY6
#
_model_server_result.job_id            dzY7jMkIeerzh-WY_J0K1A 
_model_server_result.datetime_utc      '2024-10-11 00:26:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oy6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    5OY6 
#
_exptl.entry_id    5OY6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              330.769 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'cyclical inhibitor OD36' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.52 
_cell.angle_gamma         90 
_cell.entry_id            5OY6 
_cell.length_a            84.26 
_cell.length_b            103.53 
_cell.length_c            84.84 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OY6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,K 1 1 
B,H,L 2 1 
C,I,M 3 1 
D,J,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 197 A CYS 395 1_555 C SG CYS 197 C CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf2 B SG CYS 197 B CYS 395 1_555 D SG CYS 197 D CYS 395 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C16 H15 Cl N4 O2' 
_chem_comp.formula_weight    330.769 
_chem_comp.id                B4E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'cyclical inhibitor OD36' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL1 C02 B4E sing 70 n n 
C02 C07 B4E doub 71 n y 
C02 C03 B4E sing 72 n y 
C07 C06 B4E sing 73 n y 
C09 N10 B4E doub 74 n y 
C09 C08 B4E sing 75 n y 
C03 C04 B4E doub 76 n y 
N10 N11 B4E sing 77 n y 
C06 C08 B4E sing 78 n n 
C06 C05 B4E doub 79 n y 
C08 C16 B4E doub 80 n y 
N11 C16 B4E sing 81 n y 
N11 C12 B4E sing 82 n y 
C04 C05 B4E sing 83 n y 
C04 O23 B4E sing 84 n n 
C16 N15 B4E sing 85 n y 
C12 C13 B4E doub 86 n y 
N15 C14 B4E doub 87 n y 
O23 C22 B4E sing 88 n n 
C13 C14 B4E sing 89 n y 
C22 C21 B4E sing 90 n n 
C14 N17 B4E sing 91 n n 
N17 C18 B4E sing 92 n n 
C18 C19 B4E sing 93 n n 
C21 O20 B4E sing 94 n n 
O20 C19 B4E sing 95 n n 
C03 H1 B4E sing 96 n n 
C05 H2 B4E sing 97 n n 
C07 H3 B4E sing 98 n n 
C09 H4 B4E sing 99 n n 
C12 H5 B4E sing 100 n n 
C13 H6 B4E sing 101 n n 
C18 H7 B4E sing 102 n n 
C18 H8 B4E sing 103 n n 
C19 H9 B4E sing 104 n n 
C19 H10 B4E sing 105 n n 
C21 H11 B4E sing 106 n n 
C21 H12 B4E sing 107 n n 
C22 H13 B4E sing 108 n n 
C22 H14 B4E sing 109 n n 
N17 H15 B4E sing 110 n n 
#
_atom_sites.entry_id                     5OY6 
_atom_sites.fract_transf_matrix[1][1]    0.011868 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005922 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009659 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013173 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 B4E A 1 501 2 B4E ONC . 
F 3 EDO A 1 502 1 EDO EDO . 
G 3 EDO A 1 503 2 EDO EDO . 
H 2 B4E B 1 501 1 B4E ONC . 
I 2 B4E C 1 501 3 B4E ONC . 
J 2 B4E D 1 501 4 B4E ONC . 
K 4 HOH A 1 601 34 HOH HOH . 
K 4 HOH A 2 602 11 HOH HOH . 
K 4 HOH A 3 603 23 HOH HOH . 
K 4 HOH A 4 604 47 HOH HOH . 
K 4 HOH A 5 605 30 HOH HOH . 
K 4 HOH A 6 606 2 HOH HOH . 
K 4 HOH A 7 607 25 HOH HOH . 
K 4 HOH A 8 608 3 HOH HOH . 
K 4 HOH A 9 609 10 HOH HOH . 
K 4 HOH A 10 610 44 HOH HOH . 
K 4 HOH A 11 611 35 HOH HOH . 
K 4 HOH A 12 612 14 HOH HOH . 
K 4 HOH A 13 613 27 HOH HOH . 
K 4 HOH A 14 614 39 HOH HOH . 
K 4 HOH A 15 615 29 HOH HOH . 
K 4 HOH A 16 616 9 HOH HOH . 
K 4 HOH A 17 617 8 HOH HOH . 
K 4 HOH A 18 618 4 HOH HOH . 
K 4 HOH A 19 619 13 HOH HOH . 
K 4 HOH A 20 620 21 HOH HOH . 
K 4 HOH A 21 621 63 HOH HOH . 
K 4 HOH A 22 622 38 HOH HOH . 
K 4 HOH A 23 623 32 HOH HOH . 
K 4 HOH A 24 624 6 HOH HOH . 
K 4 HOH A 25 625 1 HOH HOH . 
K 4 HOH A 26 626 19 HOH HOH . 
K 4 HOH A 27 627 26 HOH HOH . 
K 4 HOH A 28 628 40 HOH HOH . 
K 4 HOH A 29 629 33 HOH HOH . 
K 4 HOH A 30 630 42 HOH HOH . 
K 4 HOH A 31 631 61 HOH HOH . 
K 4 HOH A 32 632 43 HOH HOH . 
K 4 HOH A 33 633 36 HOH HOH . 
K 4 HOH A 34 634 64 HOH HOH . 
K 4 HOH A 35 635 7 HOH HOH . 
K 4 HOH A 36 636 62 HOH HOH . 
K 4 HOH A 37 637 37 HOH HOH . 
K 4 HOH A 38 638 46 HOH HOH . 
K 4 HOH A 39 639 45 HOH HOH . 
K 4 HOH A 40 640 41 HOH HOH . 
K 4 HOH A 41 641 59 HOH HOH . 
L 4 HOH B 1 601 15 HOH HOH . 
L 4 HOH B 2 602 56 HOH HOH . 
L 4 HOH B 3 603 20 HOH HOH . 
L 4 HOH B 4 604 12 HOH HOH . 
L 4 HOH B 5 605 28 HOH HOH . 
L 4 HOH B 6 606 67 HOH HOH . 
L 4 HOH B 7 607 24 HOH HOH . 
L 4 HOH B 8 608 53 HOH HOH . 
L 4 HOH B 9 609 5 HOH HOH . 
L 4 HOH B 10 610 55 HOH HOH . 
L 4 HOH B 11 611 16 HOH HOH . 
L 4 HOH B 12 612 57 HOH HOH . 
L 4 HOH B 13 613 68 HOH HOH . 
L 4 HOH B 14 614 54 HOH HOH . 
L 4 HOH B 15 615 51 HOH HOH . 
L 4 HOH B 16 616 52 HOH HOH . 
M 4 HOH C 1 601 31 HOH HOH . 
M 4 HOH C 2 602 17 HOH HOH . 
M 4 HOH C 3 603 69 HOH HOH . 
M 4 HOH C 4 604 22 HOH HOH . 
M 4 HOH C 5 605 65 HOH HOH . 
M 4 HOH C 6 606 71 HOH HOH . 
M 4 HOH C 7 607 70 HOH HOH . 
N 4 HOH D 1 601 18 HOH HOH . 
N 4 HOH D 2 602 60 HOH HOH . 
N 4 HOH D 3 603 66 HOH HOH . 
N 4 HOH D 4 604 48 HOH HOH . 
N 4 HOH D 5 605 50 HOH HOH . 
N 4 HOH D 6 606 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 B4E . . . E 2 16.95 -5.648 -20.763 1 61.27 ? C02 B4E 501 A 1 
HETATM 2 C C03 B4E . . . E 2 15.72 -6.302 -20.831 1 61.47 ? C03 B4E 501 A 1 
HETATM 3 C C04 B4E . . . E 2 14.91 -6.397 -19.695 1 63.26 ? C04 B4E 501 A 1 
HETATM 4 C C05 B4E . . . E 2 15.337 -5.83 -18.5 1 62.33 ? C05 B4E 501 A 1 
HETATM 5 C C06 B4E . . . E 2 16.574 -5.176 -18.434 1 61.08 ? C06 B4E 501 A 1 
HETATM 6 C C07 B4E . . . E 2 17.37 -5.086 -19.569 1 60.25 ? C07 B4E 501 A 1 
HETATM 7 C C08 B4E . . . E 2 17.017 -4.598 -17.242 1 58.1 ? C08 B4E 501 A 1 
HETATM 8 C C09 B4E . . . E 2 17.806 -3.458 -17.096 1 57.32 ? C09 B4E 501 A 1 
HETATM 9 C C12 B4E . . . E 2 17.241 -4.401 -13.719 1 58.31 ? C12 B4E 501 A 1 
HETATM 10 C C13 B4E . . . E 2 16.495 -5.475 -13.248 1 59 ? C13 B4E 501 A 1 
HETATM 11 C C14 B4E . . . E 2 15.862 -6.33 -14.164 1 61.54 ? C14 B4E 501 A 1 
HETATM 12 C C16 B4E . . . E 2 16.734 -5.041 -15.924 1 58.12 ? C16 B4E 501 A 1 
HETATM 13 C C18 B4E . . . E 2 14.718 -8.468 -14.612 1 64.72 ? C18 B4E 501 A 1 
HETATM 14 C C19 B4E . . . E 2 13.546 -7.98 -15.428 1 64.81 ? C19 B4E 501 A 1 
HETATM 15 C C21 B4E . . . E 2 12.818 -7.963 -17.718 1 64.27 ? C21 B4E 501 A 1 
HETATM 16 C C22 B4E . . . E 2 13.462 -8.241 -19.052 1 64.7 ? C22 B4E 501 A 1 
HETATM 17 N N10 B4E . . . E 2 18.001 -3.234 -15.777 1 57.69 ? N10 B4E 501 A 1 
HETATM 18 N N11 B4E . . . E 2 17.34 -4.225 -15.075 1 57.98 ? N11 B4E 501 A 1 
HETATM 19 N N15 B4E . . . E 2 15.983 -6.112 -15.486 1 59.77 ? N15 B4E 501 A 1 
HETATM 20 N N17 B4E . . . E 2 15.091 -7.436 -13.701 1 64.89 ? N17 B4E 501 A 1 
HETATM 21 O O20 B4E . . . E 2 13.766 -8.438 -16.761 1 65.93 ? O20 B4E 501 A 1 
HETATM 22 O O23 B4E . . . E 2 13.638 -7.031 -19.763 1 65.24 ? O23 B4E 501 A 1 
HETATM 23 CL CL1 B4E . . . E 2 18.004 -5.508 -22.154 1 63.09 ? CL1 B4E 501 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#