data_5P2P
#
_model_server_result.job_id            kglrzJ7fw2FEbBreGXp-tQ 
_model_server_result.datetime_utc      '2024-10-19 16:51:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5p2p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":125}' 
#
_entry.id    5P2P 
#
_exptl.entry_id    5P2P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5P2P 
_cell.length_a            52.57 
_cell.length_b            62.44 
_cell.length_c            85.58 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5P2P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 72 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf2 A SG CYS 27 A CYS 27 1_555 A SG CYS 119 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 A SG CYS 29 A CYS 29 1_555 A SG CYS 45 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 A SG CYS 44 A CYS 44 1_555 A SG CYS 100 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf5 A SG CYS 51 A CYS 51 1_555 A SG CYS 93 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf6 A SG CYS 61 A CYS 61 1_555 A SG CYS 86 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf7 A SG CYS 79 A CYS 84 1_555 A SG CYS 91 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
disulf ? disulf8 B SG CYS 11 B CYS 11 1_555 B SG CYS 72 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 B SG CYS 27 B CYS 27 1_555 B SG CYS 119 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf10 B SG CYS 29 B CYS 29 1_555 B SG CYS 45 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf11 B SG CYS 44 B CYS 44 1_555 B SG CYS 100 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
disulf ? disulf12 B SG CYS 51 B CYS 51 1_555 B SG CYS 93 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf13 B SG CYS 61 B CYS 61 1_555 B SG CYS 86 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf14 B SG CYS 79 B CYS 84 1_555 B SG CYS 91 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc1 A O TYR 28 A TYR 28 1_555 C CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc2 A O GLY 30 A GLY 30 1_555 C CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc3 A O GLY 32 A GLY 32 1_555 C CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc4 A OD1 ASP 49 A ASP 49 1_555 C CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc5 A OD2 ASP 49 A ASP 49 1_555 C CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc6 A OE1 GLU 66 A GLU 71 1_555 F CA CA . B CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc7 A O SER 67 A SER 72 1_555 F CA CA . B CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc8 A OE1 GLU 87 A GLU 92 1_555 F CA CA . B CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc9 C CA CA . A CA 125 1_555 D O2P DHG . A DHG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc10 C CA CA . A CA 125 1_555 D O1 DHG . A DHG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc11 B O TYR 28 B TYR 28 1_555 E CA CA . B CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc12 B O GLY 30 B GLY 30 1_555 E CA CA . B CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc13 B O GLY 32 B GLY 32 1_555 E CA CA . B CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc14 B OD1 ASP 49 B ASP 49 1_555 E CA CA . B CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc15 B OD2 ASP 49 B ASP 49 1_555 E CA CA . B CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc16 B OE1 GLU 66 B GLU 71 1_555 F CA CA . B CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? 
metalc ? metalc17 B O SER 67 B SER 72 1_555 F CA CA . B CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc18 B OE1 GLU 87 B GLU 92 1_555 F CA CA . B CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc19 E CA CA . B CA 125 1_555 G O2P DHG . B DHG 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc20 E CA CA . B CA 125 1_555 G O1 DHG . B DHG 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5P2P 
_atom_sites.fract_transf_matrix[1][1]    0.019022 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016015 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011685 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 125 125 CA CA . 
D 3 DHG A 1 126 126 DHG DHG . 
E 2 CA B 1 125 125 CA CA . 
F 2 CA B 1 126 1 CA CA . 
G 3 DHG B 1 127 126 DHG DHG . 
H 4 HOH A 1 127 2 HOH HOH . 
H 4 HOH A 2 128 3 HOH HOH . 
H 4 HOH A 3 129 8 HOH HOH . 
H 4 HOH A 4 130 9 HOH HOH . 
H 4 HOH A 5 131 10 HOH HOH . 
H 4 HOH A 6 132 11 HOH HOH . 
H 4 HOH A 7 133 14 HOH HOH . 
H 4 HOH A 8 134 17 HOH HOH . 
H 4 HOH A 9 135 19 HOH HOH . 
H 4 HOH A 10 136 20 HOH HOH . 
H 4 HOH A 11 137 22 HOH HOH . 
H 4 HOH A 12 138 26 HOH HOH . 
H 4 HOH A 13 139 27 HOH HOH . 
H 4 HOH A 14 140 29 HOH HOH . 
H 4 HOH A 15 141 31 HOH HOH . 
H 4 HOH A 16 142 33 HOH HOH . 
H 4 HOH A 17 143 36 HOH HOH . 
H 4 HOH A 18 144 39 HOH HOH . 
H 4 HOH A 19 145 40 HOH HOH . 
H 4 HOH A 20 146 41 HOH HOH . 
H 4 HOH A 21 147 42 HOH HOH . 
H 4 HOH A 22 148 46 HOH HOH . 
H 4 HOH A 23 149 47 HOH HOH . 
H 4 HOH A 24 150 51 HOH HOH . 
H 4 HOH A 25 151 52 HOH HOH . 
H 4 HOH A 26 152 54 HOH HOH . 
H 4 HOH A 27 153 55 HOH HOH . 
H 4 HOH A 28 154 56 HOH HOH . 
H 4 HOH A 29 155 57 HOH HOH . 
H 4 HOH A 30 156 60 HOH HOH . 
H 4 HOH A 31 157 62 HOH HOH . 
H 4 HOH A 32 158 63 HOH HOH . 
H 4 HOH A 33 159 64 HOH HOH . 
H 4 HOH A 34 160 65 HOH HOH . 
H 4 HOH A 35 161 68 HOH HOH . 
H 4 HOH A 36 162 69 HOH HOH . 
H 4 HOH A 37 163 70 HOH HOH . 
H 4 HOH A 38 164 71 HOH HOH . 
H 4 HOH A 39 165 72 HOH HOH . 
H 4 HOH A 40 166 73 HOH HOH . 
H 4 HOH A 41 167 75 HOH HOH . 
H 4 HOH A 42 168 76 HOH HOH . 
H 4 HOH A 43 169 77 HOH HOH . 
H 4 HOH A 44 170 78 HOH HOH . 
H 4 HOH A 45 171 84 HOH HOH . 
H 4 HOH A 46 172 86 HOH HOH . 
H 4 HOH A 47 173 88 HOH HOH . 
H 4 HOH A 48 174 92 HOH HOH . 
H 4 HOH A 49 175 94 HOH HOH . 
H 4 HOH A 50 176 95 HOH HOH . 
H 4 HOH A 51 177 97 HOH HOH . 
H 4 HOH A 52 178 99 HOH HOH . 
H 4 HOH A 53 179 100 HOH HOH . 
H 4 HOH A 54 180 101 HOH HOH . 
H 4 HOH A 55 181 103 HOH HOH . 
H 4 HOH A 56 182 105 HOH HOH . 
H 4 HOH A 57 183 107 HOH HOH . 
H 4 HOH A 58 184 110 HOH HOH . 
H 4 HOH A 59 185 112 HOH HOH . 
H 4 HOH A 60 186 117 HOH HOH . 
H 4 HOH A 61 187 118 HOH HOH . 
H 4 HOH A 62 188 120 HOH HOH . 
H 4 HOH A 63 189 121 HOH HOH . 
H 4 HOH A 64 190 124 HOH HOH . 
H 4 HOH A 65 191 125 HOH HOH . 
H 4 HOH A 66 192 126 HOH HOH . 
I 4 HOH B 1 128 4 HOH HOH . 
I 4 HOH B 2 129 5 HOH HOH . 
I 4 HOH B 3 130 6 HOH HOH . 
I 4 HOH B 4 131 7 HOH HOH . 
I 4 HOH B 5 132 12 HOH HOH . 
I 4 HOH B 6 133 13 HOH HOH . 
I 4 HOH B 7 134 15 HOH HOH . 
I 4 HOH B 8 135 16 HOH HOH . 
I 4 HOH B 9 136 18 HOH HOH . 
I 4 HOH B 10 137 21 HOH HOH . 
I 4 HOH B 11 138 23 HOH HOH . 
I 4 HOH B 12 139 24 HOH HOH . 
I 4 HOH B 13 140 25 HOH HOH . 
I 4 HOH B 14 141 28 HOH HOH . 
I 4 HOH B 15 142 30 HOH HOH . 
I 4 HOH B 16 143 32 HOH HOH . 
I 4 HOH B 17 144 34 HOH HOH . 
I 4 HOH B 18 145 35 HOH HOH . 
I 4 HOH B 19 146 37 HOH HOH . 
I 4 HOH B 20 147 38 HOH HOH . 
I 4 HOH B 21 148 43 HOH HOH . 
I 4 HOH B 22 149 44 HOH HOH . 
I 4 HOH B 23 150 45 HOH HOH . 
I 4 HOH B 24 151 48 HOH HOH . 
I 4 HOH B 25 152 49 HOH HOH . 
I 4 HOH B 26 153 50 HOH HOH . 
I 4 HOH B 27 154 53 HOH HOH . 
I 4 HOH B 28 155 58 HOH HOH . 
I 4 HOH B 29 156 59 HOH HOH . 
I 4 HOH B 30 157 61 HOH HOH . 
I 4 HOH B 31 158 66 HOH HOH . 
I 4 HOH B 32 159 67 HOH HOH . 
I 4 HOH B 33 160 74 HOH HOH . 
I 4 HOH B 34 161 79 HOH HOH . 
I 4 HOH B 35 162 80 HOH HOH . 
I 4 HOH B 36 163 81 HOH HOH . 
I 4 HOH B 37 164 82 HOH HOH . 
I 4 HOH B 38 165 83 HOH HOH . 
I 4 HOH B 39 166 85 HOH HOH . 
I 4 HOH B 40 167 87 HOH HOH . 
I 4 HOH B 41 168 89 HOH HOH . 
I 4 HOH B 42 169 90 HOH HOH . 
I 4 HOH B 43 170 91 HOH HOH . 
I 4 HOH B 44 171 93 HOH HOH . 
I 4 HOH B 45 172 96 HOH HOH . 
I 4 HOH B 46 173 98 HOH HOH . 
I 4 HOH B 47 174 102 HOH HOH . 
I 4 HOH B 48 175 104 HOH HOH . 
I 4 HOH B 49 176 106 HOH HOH . 
I 4 HOH B 50 177 108 HOH HOH . 
I 4 HOH B 51 178 109 HOH HOH . 
I 4 HOH B 52 179 111 HOH HOH . 
I 4 HOH B 53 180 113 HOH HOH . 
I 4 HOH B 54 181 114 HOH HOH . 
I 4 HOH B 55 182 115 HOH HOH . 
I 4 HOH B 56 183 116 HOH HOH . 
I 4 HOH B 57 184 119 HOH HOH . 
I 4 HOH B 58 185 122 HOH HOH . 
I 4 HOH B 59 186 123 HOH HOH . 
I 4 HOH B 60 187 127 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               3.604 
_atom_site.Cartn_y               1.776 
_atom_site.Cartn_z               5.891 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        7.55 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           125 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#