data_5P9F
#
_model_server_result.job_id            WhGydNT5p2aDD5Tl6nyKmg 
_model_server_result.datetime_utc      '2024-11-24 17:06:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5p9f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":703}' 
#
_entry.id    5P9F 
#
_exptl.entry_id    5P9F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5P9F 
_cell.length_a            72.911 
_cell.length_b            103.931 
_cell.length_c            38.612 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5P9F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 167 n n 
C1 C2 EDO sing 168 n n 
C1 H11 EDO sing 169 n n 
C1 H12 EDO sing 170 n n 
O1 HO1 EDO sing 171 n n 
C2 O2 EDO sing 172 n n 
C2 H21 EDO sing 173 n n 
C2 H22 EDO sing 174 n n 
O2 HO2 EDO sing 175 n n 
#
_atom_sites.entry_id                     5P9F 
_atom_sites.fract_transf_matrix[1][1]    0.013715 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009622 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025899 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 2VL A 1 701 701 2VL 2VL . 
C 3 EDO A 1 702 702 EDO EDO . 
D 3 EDO A 1 703 703 EDO EDO . 
E 3 EDO A 1 704 704 EDO EDO . 
F 3 EDO A 1 705 705 EDO EDO . 
G 4 GOL A 1 706 706 GOL GOL . 
H 5 HOH A 1 801 801 HOH HOH . 
H 5 HOH A 2 802 802 HOH HOH . 
H 5 HOH A 3 803 803 HOH HOH . 
H 5 HOH A 4 804 804 HOH HOH . 
H 5 HOH A 5 805 805 HOH HOH . 
H 5 HOH A 6 806 806 HOH HOH . 
H 5 HOH A 7 807 807 HOH HOH . 
H 5 HOH A 8 808 808 HOH HOH . 
H 5 HOH A 9 809 809 HOH HOH . 
H 5 HOH A 10 810 810 HOH HOH . 
H 5 HOH A 11 811 811 HOH HOH . 
H 5 HOH A 12 812 812 HOH HOH . 
H 5 HOH A 13 813 813 HOH HOH . 
H 5 HOH A 14 814 814 HOH HOH . 
H 5 HOH A 15 815 815 HOH HOH . 
H 5 HOH A 16 816 816 HOH HOH . 
H 5 HOH A 17 817 817 HOH HOH . 
H 5 HOH A 18 818 818 HOH HOH . 
H 5 HOH A 19 819 819 HOH HOH . 
H 5 HOH A 20 820 820 HOH HOH . 
H 5 HOH A 21 821 821 HOH HOH . 
H 5 HOH A 22 822 822 HOH HOH . 
H 5 HOH A 23 823 823 HOH HOH . 
H 5 HOH A 24 824 824 HOH HOH . 
H 5 HOH A 25 825 825 HOH HOH . 
H 5 HOH A 26 826 826 HOH HOH . 
H 5 HOH A 27 827 827 HOH HOH . 
H 5 HOH A 28 828 828 HOH HOH . 
H 5 HOH A 29 829 830 HOH HOH . 
H 5 HOH A 30 830 829 HOH HOH . 
H 5 HOH A 31 831 831 HOH HOH . 
H 5 HOH A 32 832 832 HOH HOH . 
H 5 HOH A 33 833 833 HOH HOH . 
H 5 HOH A 34 834 834 HOH HOH . 
H 5 HOH A 35 835 835 HOH HOH . 
H 5 HOH A 36 836 836 HOH HOH . 
H 5 HOH A 37 837 837 HOH HOH . 
H 5 HOH A 38 838 838 HOH HOH . 
H 5 HOH A 39 839 839 HOH HOH . 
H 5 HOH A 40 840 840 HOH HOH . 
H 5 HOH A 41 841 841 HOH HOH . 
H 5 HOH A 42 842 842 HOH HOH . 
H 5 HOH A 43 843 843 HOH HOH . 
H 5 HOH A 44 844 844 HOH HOH . 
H 5 HOH A 45 845 845 HOH HOH . 
H 5 HOH A 46 846 846 HOH HOH . 
H 5 HOH A 47 847 847 HOH HOH . 
H 5 HOH A 48 848 848 HOH HOH . 
H 5 HOH A 49 849 849 HOH HOH . 
H 5 HOH A 50 850 850 HOH HOH . 
H 5 HOH A 51 851 851 HOH HOH . 
H 5 HOH A 52 852 852 HOH HOH . 
H 5 HOH A 53 853 853 HOH HOH . 
H 5 HOH A 54 854 854 HOH HOH . 
H 5 HOH A 55 855 855 HOH HOH . 
H 5 HOH A 56 856 856 HOH HOH . 
H 5 HOH A 57 857 857 HOH HOH . 
H 5 HOH A 58 858 858 HOH HOH . 
H 5 HOH A 59 859 859 HOH HOH . 
H 5 HOH A 60 860 860 HOH HOH . 
H 5 HOH A 61 861 861 HOH HOH . 
H 5 HOH A 62 862 862 HOH HOH . 
H 5 HOH A 63 863 863 HOH HOH . 
H 5 HOH A 64 864 864 HOH HOH . 
H 5 HOH A 65 865 865 HOH HOH . 
H 5 HOH A 66 866 866 HOH HOH . 
H 5 HOH A 67 867 867 HOH HOH . 
H 5 HOH A 68 868 868 HOH HOH . 
H 5 HOH A 69 869 869 HOH HOH . 
H 5 HOH A 70 870 870 HOH HOH . 
H 5 HOH A 71 871 871 HOH HOH . 
H 5 HOH A 72 872 872 HOH HOH . 
H 5 HOH A 73 873 873 HOH HOH . 
H 5 HOH A 74 874 874 HOH HOH . 
H 5 HOH A 75 875 875 HOH HOH . 
H 5 HOH A 76 876 876 HOH HOH . 
H 5 HOH A 77 877 877 HOH HOH . 
H 5 HOH A 78 878 878 HOH HOH . 
H 5 HOH A 79 879 879 HOH HOH . 
H 5 HOH A 80 880 880 HOH HOH . 
H 5 HOH A 81 881 881 HOH HOH . 
H 5 HOH A 82 882 882 HOH HOH . 
H 5 HOH A 83 883 883 HOH HOH . 
H 5 HOH A 84 884 884 HOH HOH . 
H 5 HOH A 85 885 885 HOH HOH . 
H 5 HOH A 86 886 886 HOH HOH . 
H 5 HOH A 87 887 887 HOH HOH . 
H 5 HOH A 88 888 888 HOH HOH . 
H 5 HOH A 89 889 890 HOH HOH . 
H 5 HOH A 90 890 889 HOH HOH . 
H 5 HOH A 91 891 891 HOH HOH . 
H 5 HOH A 92 892 892 HOH HOH . 
H 5 HOH A 93 893 893 HOH HOH . 
H 5 HOH A 94 894 894 HOH HOH . 
H 5 HOH A 95 895 895 HOH HOH . 
H 5 HOH A 96 896 896 HOH HOH . 
H 5 HOH A 97 897 897 HOH HOH . 
H 5 HOH A 98 898 898 HOH HOH . 
H 5 HOH A 99 899 899 HOH HOH . 
H 5 HOH A 100 900 900 HOH HOH . 
H 5 HOH A 101 901 901 HOH HOH . 
H 5 HOH A 102 902 902 HOH HOH . 
H 5 HOH A 103 903 903 HOH HOH . 
H 5 HOH A 104 904 904 HOH HOH . 
H 5 HOH A 105 905 905 HOH HOH . 
H 5 HOH A 106 906 906 HOH HOH . 
H 5 HOH A 107 907 907 HOH HOH . 
H 5 HOH A 108 908 908 HOH HOH . 
H 5 HOH A 109 909 909 HOH HOH . 
H 5 HOH A 110 910 910 HOH HOH . 
H 5 HOH A 111 911 911 HOH HOH . 
H 5 HOH A 112 912 912 HOH HOH . 
H 5 HOH A 113 913 913 HOH HOH . 
H 5 HOH A 114 914 914 HOH HOH . 
H 5 HOH A 115 915 915 HOH HOH . 
H 5 HOH A 116 916 916 HOH HOH . 
H 5 HOH A 117 917 917 HOH HOH . 
H 5 HOH A 118 918 918 HOH HOH . 
H 5 HOH A 119 919 919 HOH HOH . 
H 5 HOH A 120 920 920 HOH HOH . 
H 5 HOH A 121 921 921 HOH HOH . 
H 5 HOH A 122 922 922 HOH HOH . 
H 5 HOH A 123 923 923 HOH HOH . 
H 5 HOH A 124 924 924 HOH HOH . 
H 5 HOH A 125 925 925 HOH HOH . 
H 5 HOH A 126 926 926 HOH HOH . 
H 5 HOH A 127 927 927 HOH HOH . 
H 5 HOH A 128 928 928 HOH HOH . 
H 5 HOH A 129 929 929 HOH HOH . 
H 5 HOH A 130 930 930 HOH HOH . 
H 5 HOH A 131 931 931 HOH HOH . 
H 5 HOH A 132 932 932 HOH HOH . 
H 5 HOH A 133 933 933 HOH HOH . 
H 5 HOH A 134 934 934 HOH HOH . 
H 5 HOH A 135 935 935 HOH HOH . 
H 5 HOH A 136 936 936 HOH HOH . 
H 5 HOH A 137 937 937 HOH HOH . 
H 5 HOH A 138 938 938 HOH HOH . 
H 5 HOH A 139 939 939 HOH HOH . 
H 5 HOH A 140 940 940 HOH HOH . 
H 5 HOH A 141 941 941 HOH HOH . 
H 5 HOH A 142 942 942 HOH HOH . 
H 5 HOH A 143 943 943 HOH HOH . 
H 5 HOH A 144 944 944 HOH HOH . 
H 5 HOH A 145 945 945 HOH HOH . 
H 5 HOH A 146 946 946 HOH HOH . 
H 5 HOH A 147 947 947 HOH HOH . 
H 5 HOH A 148 948 948 HOH HOH . 
H 5 HOH A 149 949 949 HOH HOH . 
H 5 HOH A 150 950 950 HOH HOH . 
H 5 HOH A 151 951 951 HOH HOH . 
H 5 HOH A 152 952 952 HOH HOH . 
H 5 HOH A 153 953 953 HOH HOH . 
H 5 HOH A 154 954 954 HOH HOH . 
H 5 HOH A 155 955 955 HOH HOH . 
H 5 HOH A 156 956 956 HOH HOH . 
H 5 HOH A 157 957 957 HOH HOH . 
H 5 HOH A 158 958 958 HOH HOH . 
H 5 HOH A 159 959 959 HOH HOH . 
H 5 HOH A 160 960 960 HOH HOH . 
H 5 HOH A 161 961 961 HOH HOH . 
H 5 HOH A 162 962 962 HOH HOH . 
H 5 HOH A 163 963 963 HOH HOH . 
H 5 HOH A 164 964 964 HOH HOH . 
H 5 HOH A 165 965 965 HOH HOH . 
H 5 HOH A 166 966 966 HOH HOH . 
H 5 HOH A 167 967 967 HOH HOH . 
H 5 HOH A 168 968 968 HOH HOH . 
H 5 HOH A 169 969 969 HOH HOH . 
H 5 HOH A 170 970 970 HOH HOH . 
H 5 HOH A 171 971 971 HOH HOH . 
H 5 HOH A 172 972 972 HOH HOH . 
H 5 HOH A 173 973 973 HOH HOH . 
H 5 HOH A 174 974 974 HOH HOH . 
H 5 HOH A 175 975 975 HOH HOH . 
H 5 HOH A 176 976 976 HOH HOH . 
H 5 HOH A 177 977 977 HOH HOH . 
H 5 HOH A 178 978 978 HOH HOH . 
H 5 HOH A 179 979 979 HOH HOH . 
H 5 HOH A 180 980 980 HOH HOH . 
H 5 HOH A 181 981 981 HOH HOH . 
H 5 HOH A 182 982 982 HOH HOH . 
H 5 HOH A 183 983 983 HOH HOH . 
H 5 HOH A 184 984 984 HOH HOH . 
H 5 HOH A 185 985 985 HOH HOH . 
H 5 HOH A 186 986 986 HOH HOH . 
H 5 HOH A 187 987 987 HOH HOH . 
H 5 HOH A 188 988 988 HOH HOH . 
H 5 HOH A 189 989 989 HOH HOH . 
H 5 HOH A 190 990 990 HOH HOH . 
H 5 HOH A 191 991 991 HOH HOH . 
H 5 HOH A 192 992 992 HOH HOH . 
H 5 HOH A 193 993 993 HOH HOH . 
H 5 HOH A 194 994 994 HOH HOH . 
H 5 HOH A 195 995 995 HOH HOH . 
H 5 HOH A 196 996 996 HOH HOH . 
H 5 HOH A 197 997 997 HOH HOH . 
H 5 HOH A 198 998 998 HOH HOH . 
H 5 HOH A 199 999 999 HOH HOH . 
H 5 HOH A 200 1000 1000 HOH HOH . 
H 5 HOH A 201 1001 1001 HOH HOH . 
H 5 HOH A 202 1002 1002 HOH HOH . 
H 5 HOH A 203 1003 1003 HOH HOH . 
H 5 HOH A 204 1004 1004 HOH HOH . 
H 5 HOH A 205 1005 1005 HOH HOH . 
H 5 HOH A 206 1006 1006 HOH HOH . 
H 5 HOH A 207 1007 1007 HOH HOH . 
H 5 HOH A 208 1008 1008 HOH HOH . 
H 5 HOH A 209 1009 1009 HOH HOH . 
H 5 HOH A 210 1010 1010 HOH HOH . 
H 5 HOH A 211 1011 1011 HOH HOH . 
H 5 HOH A 212 1012 1012 HOH HOH . 
H 5 HOH A 213 1013 1013 HOH HOH . 
H 5 HOH A 214 1014 1014 HOH HOH . 
H 5 HOH A 215 1015 1015 HOH HOH . 
H 5 HOH A 216 1016 1016 HOH HOH . 
H 5 HOH A 217 1017 1017 HOH HOH . 
H 5 HOH A 218 1018 1018 HOH HOH . 
H 5 HOH A 219 1019 1019 HOH HOH . 
H 5 HOH A 220 1020 1020 HOH HOH . 
H 5 HOH A 221 1021 1021 HOH HOH . 
H 5 HOH A 222 1022 1022 HOH HOH . 
H 5 HOH A 223 1023 1023 HOH HOH . 
H 5 HOH A 224 1024 1024 HOH HOH . 
H 5 HOH A 225 1025 1025 HOH HOH . 
H 5 HOH A 226 1026 1026 HOH HOH . 
H 5 HOH A 227 1027 1027 HOH HOH . 
H 5 HOH A 228 1028 1028 HOH HOH . 
H 5 HOH A 229 1029 1029 HOH HOH . 
H 5 HOH A 230 1030 1030 HOH HOH . 
H 5 HOH A 231 1031 1031 HOH HOH . 
H 5 HOH A 232 1032 1032 HOH HOH . 
H 5 HOH A 233 1033 1033 HOH HOH . 
H 5 HOH A 234 1034 1034 HOH HOH . 
H 5 HOH A 235 1035 1035 HOH HOH . 
H 5 HOH A 236 1036 1036 HOH HOH . 
H 5 HOH A 237 1037 1037 HOH HOH . 
H 5 HOH A 238 1038 1038 HOH HOH . 
H 5 HOH A 239 1039 1039 HOH HOH . 
H 5 HOH A 240 1040 1040 HOH HOH . 
H 5 HOH A 241 1041 1041 HOH HOH . 
H 5 HOH A 242 1042 1042 HOH HOH . 
H 5 HOH A 243 1043 1043 HOH HOH . 
H 5 HOH A 244 1044 1044 HOH HOH . 
H 5 HOH A 245 1045 1045 HOH HOH . 
H 5 HOH A 246 1046 1046 HOH HOH . 
H 5 HOH A 247 1047 1047 HOH HOH . 
H 5 HOH A 248 1048 1048 HOH HOH . 
H 5 HOH A 249 1049 1049 HOH HOH . 
H 5 HOH A 250 1050 1050 HOH HOH . 
H 5 HOH A 251 1051 1051 HOH HOH . 
H 5 HOH A 252 1052 1052 HOH HOH . 
H 5 HOH A 253 1053 1053 HOH HOH . 
H 5 HOH A 254 1054 1054 HOH HOH . 
H 5 HOH A 255 1055 1055 HOH HOH . 
H 5 HOH A 256 1056 1056 HOH HOH . 
H 5 HOH A 257 1057 1057 HOH HOH . 
H 5 HOH A 258 1058 1058 HOH HOH . 
H 5 HOH A 259 1059 1059 HOH HOH . 
H 5 HOH A 260 1060 1060 HOH HOH . 
H 5 HOH A 261 1061 1061 HOH HOH . 
H 5 HOH A 262 1062 1062 HOH HOH . 
H 5 HOH A 263 1063 1063 HOH HOH . 
H 5 HOH A 264 1064 1064 HOH HOH . 
H 5 HOH A 265 1065 1065 HOH HOH . 
H 5 HOH A 266 1066 1066 HOH HOH . 
H 5 HOH A 267 1067 1067 HOH HOH . 
H 5 HOH A 268 1068 1068 HOH HOH . 
H 5 HOH A 269 1069 1069 HOH HOH . 
H 5 HOH A 270 1070 1070 HOH HOH . 
H 5 HOH A 271 1071 1071 HOH HOH . 
H 5 HOH A 272 1072 1072 HOH HOH . 
H 5 HOH A 273 1073 1073 HOH HOH . 
H 5 HOH A 274 1074 1074 HOH HOH . 
H 5 HOH A 275 1075 1075 HOH HOH . 
H 5 HOH A 276 1076 1076 HOH HOH . 
H 5 HOH A 277 1077 1077 HOH HOH . 
H 5 HOH A 278 1078 1078 HOH HOH . 
H 5 HOH A 279 1079 1079 HOH HOH . 
H 5 HOH A 280 1080 1080 HOH HOH . 
H 5 HOH A 281 1081 1081 HOH HOH . 
H 5 HOH A 282 1082 1082 HOH HOH . 
H 5 HOH A 283 1083 1083 HOH HOH . 
H 5 HOH A 284 1084 1084 HOH HOH . 
H 5 HOH A 285 1085 1085 HOH HOH . 
H 5 HOH A 286 1086 1086 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 19.668 22.933 11.692 1 16.09 ? C1 EDO 703 A 1 
HETATM 2 O O1 EDO . . . D 3 18.854 22.138 10.833 1 25.67 ? O1 EDO 703 A 1 
HETATM 3 C C2 EDO . . . D 3 18.784 23.781 12.603 1 8.33 ? C2 EDO 703 A 1 
HETATM 4 O O2 EDO . . . D 3 17.838 22.961 13.297 1 23.18 ? O2 EDO 703 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#