data_5P9I # _model_server_result.job_id gD3Ic1s9UnWq4UVCnIpsuA _model_server_result.datetime_utc '2024-11-13 13:48:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5p9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 5P9I # _exptl.entry_id 5P9I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 440.497 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}prop-2-en-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5P9I _cell.length_a 71.611 _cell.length_b 104.579 _cell.length_c 38.021 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5P9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H24 N6 O2' _chem_comp.formula_weight 440.497 _chem_comp.id 1E8 _chem_comp.mon_nstd_flag . _chem_comp.name 1-{(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}prop-2-en-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Imbruvica;PCI-32765 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 1E8 doub 1 n y N1 C6 1E8 sing 2 n y N3 C2 1E8 sing 3 n y C2 H2 1E8 sing 4 n n N3 C4 1E8 doub 5 n y NBF C4 1E8 sing 6 n y C4 C5 1E8 sing 7 n y C5 C6 1E8 doub 8 n y C5 CBB 1E8 sing 9 n y C6 NAB 1E8 sing 10 n n CAA CAD 1E8 doub 11 n n CAA HAA 1E8 sing 12 n n CAA HAAA 1E8 sing 13 n n NAB HNAB 1E8 sing 14 n n NAB HNAA 1E8 sing 15 n n OAC CAW 1E8 doub 16 n n CAD CAW 1E8 sing 17 n n CAD HAD 1E8 sing 18 n n CAF CAE 1E8 doub 19 n y CAE CAG 1E8 sing 20 n y CAE HAE 1E8 sing 21 n n CAF CAI 1E8 sing 22 n y CAF HAF 1E8 sing 23 n n CAG CAJ 1E8 doub 24 n y CAG HAG 1E8 sing 25 n n CAI CAY 1E8 doub 26 n y CAI HAI 1E8 sing 27 n n CAY CAJ 1E8 sing 28 n y CAJ HAJ 1E8 sing 29 n n CAM CAK 1E8 doub 30 n y CAK CAZ 1E8 sing 31 n y CAK HAK 1E8 sing 32 n n CAZ CAL 1E8 doub 33 n y CAN CAL 1E8 sing 34 n y CAL HAL 1E8 sing 35 n n CAM CBA 1E8 sing 36 n y CAM HAM 1E8 sing 37 n n CBA CAN 1E8 doub 38 n y CAN HAN 1E8 sing 39 n n CAQ CAO 1E8 sing 40 n n CAO CAP 1E8 sing 41 n n CAO HAO 1E8 sing 42 n n CAO HAOA 1E8 sing 43 n n CBE CAP 1E8 sing 44 n n CAP HAP 1E8 sing 45 n n CAP HAPA 1E8 sing 46 n n NBG CAQ 1E8 sing 47 n n CAQ HAQ 1E8 sing 48 n n CAQ HAQA 1E8 sing 49 n n NBG CAR 1E8 sing 50 n n CAR CBE 1E8 sing 51 n n CAR HAR 1E8 sing 52 n n CAR HARA 1E8 sing 53 n n NBF NAU 1E8 sing 54 n y NAU CBB 1E8 doub 55 n y CAZ OAV 1E8 sing 56 n n CAY OAV 1E8 sing 57 n n CAW NBG 1E8 sing 58 n n CBB CBA 1E8 sing 59 n n CBE NBF 1E8 sing 60 n n CBE HBE 1E8 sing 61 n n # _atom_sites.entry_id 5P9I _atom_sites.fract_transf_matrix[1][1] 0.013964 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026301 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1E8 A 1 701 1 1E8 INH . C 3 DMS A 1 702 1 DMS DMS . D 3 DMS A 1 703 2 DMS DMS . E 4 HOH A 1 801 171 HOH HOH . E 4 HOH A 2 802 165 HOH HOH . E 4 HOH A 3 803 115 HOH HOH . E 4 HOH A 4 804 51 HOH HOH . E 4 HOH A 5 805 160 HOH HOH . E 4 HOH A 6 806 36 HOH HOH . E 4 HOH A 7 807 85 HOH HOH . E 4 HOH A 8 808 109 HOH HOH . E 4 HOH A 9 809 93 HOH HOH . E 4 HOH A 10 810 53 HOH HOH . E 4 HOH A 11 811 143 HOH HOH . E 4 HOH A 12 812 2 HOH HOH . E 4 HOH A 13 813 130 HOH HOH . E 4 HOH A 14 814 147 HOH HOH . E 4 HOH A 15 815 179 HOH HOH . E 4 HOH A 16 816 21 HOH HOH . E 4 HOH A 17 817 30 HOH HOH . E 4 HOH A 18 818 151 HOH HOH . E 4 HOH A 19 819 24 HOH HOH . E 4 HOH A 20 820 167 HOH HOH . E 4 HOH A 21 821 47 HOH HOH . E 4 HOH A 22 822 121 HOH HOH . E 4 HOH A 23 823 49 HOH HOH . E 4 HOH A 24 824 28 HOH HOH . E 4 HOH A 25 825 25 HOH HOH . E 4 HOH A 26 826 29 HOH HOH . E 4 HOH A 27 827 17 HOH HOH . E 4 HOH A 28 828 159 HOH HOH . E 4 HOH A 29 829 104 HOH HOH . E 4 HOH A 30 830 120 HOH HOH . E 4 HOH A 31 831 39 HOH HOH . E 4 HOH A 32 832 16 HOH HOH . E 4 HOH A 33 833 23 HOH HOH . E 4 HOH A 34 834 82 HOH HOH . E 4 HOH A 35 835 139 HOH HOH . E 4 HOH A 36 836 106 HOH HOH . E 4 HOH A 37 837 170 HOH HOH . E 4 HOH A 38 838 78 HOH HOH . E 4 HOH A 39 839 128 HOH HOH . E 4 HOH A 40 840 89 HOH HOH . E 4 HOH A 41 841 95 HOH HOH . E 4 HOH A 42 842 168 HOH HOH . E 4 HOH A 43 843 145 HOH HOH . E 4 HOH A 44 844 164 HOH HOH . E 4 HOH A 45 845 110 HOH HOH . E 4 HOH A 46 846 116 HOH HOH . E 4 HOH A 47 847 43 HOH HOH . E 4 HOH A 48 848 8 HOH HOH . E 4 HOH A 49 849 76 HOH HOH . E 4 HOH A 50 850 61 HOH HOH . E 4 HOH A 51 851 100 HOH HOH . E 4 HOH A 52 852 111 HOH HOH . E 4 HOH A 53 853 87 HOH HOH . E 4 HOH A 54 854 122 HOH HOH . E 4 HOH A 55 855 135 HOH HOH . E 4 HOH A 56 856 22 HOH HOH . E 4 HOH A 57 857 153 HOH HOH . E 4 HOH A 58 858 70 HOH HOH . E 4 HOH A 59 859 20 HOH HOH . E 4 HOH A 60 860 10 HOH HOH . E 4 HOH A 61 861 134 HOH HOH . E 4 HOH A 62 862 150 HOH HOH . E 4 HOH A 63 863 176 HOH HOH . E 4 HOH A 64 864 11 HOH HOH . E 4 HOH A 65 865 19 HOH HOH . E 4 HOH A 66 866 74 HOH HOH . E 4 HOH A 67 867 68 HOH HOH . E 4 HOH A 68 868 92 HOH HOH . E 4 HOH A 69 869 113 HOH HOH . E 4 HOH A 70 870 90 HOH HOH . E 4 HOH A 71 871 175 HOH HOH . E 4 HOH A 72 872 33 HOH HOH . E 4 HOH A 73 873 99 HOH HOH . E 4 HOH A 74 874 105 HOH HOH . E 4 HOH A 75 875 4 HOH HOH . E 4 HOH A 76 876 94 HOH HOH . E 4 HOH A 77 877 142 HOH HOH . E 4 HOH A 78 878 7 HOH HOH . E 4 HOH A 79 879 91 HOH HOH . E 4 HOH A 80 880 63 HOH HOH . E 4 HOH A 81 881 126 HOH HOH . E 4 HOH A 82 882 162 HOH HOH . E 4 HOH A 83 883 59 HOH HOH . E 4 HOH A 84 884 32 HOH HOH . E 4 HOH A 85 885 131 HOH HOH . E 4 HOH A 86 886 45 HOH HOH . E 4 HOH A 87 887 38 HOH HOH . E 4 HOH A 88 888 80 HOH HOH . E 4 HOH A 89 889 9 HOH HOH . E 4 HOH A 90 890 15 HOH HOH . E 4 HOH A 91 891 27 HOH HOH . E 4 HOH A 92 892 35 HOH HOH . E 4 HOH A 93 893 155 HOH HOH . E 4 HOH A 94 894 132 HOH HOH . E 4 HOH A 95 895 1 HOH HOH . E 4 HOH A 96 896 31 HOH HOH . E 4 HOH A 97 897 42 HOH HOH . E 4 HOH A 98 898 117 HOH HOH . E 4 HOH A 99 899 125 HOH HOH . E 4 HOH A 100 900 56 HOH HOH . E 4 HOH A 101 901 177 HOH HOH . E 4 HOH A 102 902 13 HOH HOH . E 4 HOH A 103 903 169 HOH HOH . E 4 HOH A 104 904 41 HOH HOH . E 4 HOH A 105 905 141 HOH HOH . E 4 HOH A 106 906 127 HOH HOH . E 4 HOH A 107 907 124 HOH HOH . E 4 HOH A 108 908 79 HOH HOH . E 4 HOH A 109 909 54 HOH HOH . E 4 HOH A 110 910 18 HOH HOH . E 4 HOH A 111 911 98 HOH HOH . E 4 HOH A 112 912 5 HOH HOH . E 4 HOH A 113 913 77 HOH HOH . E 4 HOH A 114 914 67 HOH HOH . E 4 HOH A 115 915 64 HOH HOH . E 4 HOH A 116 916 37 HOH HOH . E 4 HOH A 117 917 72 HOH HOH . E 4 HOH A 118 918 6 HOH HOH . E 4 HOH A 119 919 138 HOH HOH . E 4 HOH A 120 920 137 HOH HOH . E 4 HOH A 121 921 57 HOH HOH . E 4 HOH A 122 922 3 HOH HOH . E 4 HOH A 123 923 26 HOH HOH . E 4 HOH A 124 924 83 HOH HOH . E 4 HOH A 125 925 55 HOH HOH . E 4 HOH A 126 926 86 HOH HOH . E 4 HOH A 127 927 75 HOH HOH . E 4 HOH A 128 928 69 HOH HOH . E 4 HOH A 129 929 96 HOH HOH . E 4 HOH A 130 930 112 HOH HOH . E 4 HOH A 131 931 157 HOH HOH . E 4 HOH A 132 932 182 HOH HOH . E 4 HOH A 133 933 65 HOH HOH . E 4 HOH A 134 934 108 HOH HOH . E 4 HOH A 135 935 62 HOH HOH . E 4 HOH A 136 936 48 HOH HOH . E 4 HOH A 137 937 152 HOH HOH . E 4 HOH A 138 938 60 HOH HOH . E 4 HOH A 139 939 52 HOH HOH . E 4 HOH A 140 940 148 HOH HOH . E 4 HOH A 141 941 58 HOH HOH . E 4 HOH A 142 942 158 HOH HOH . E 4 HOH A 143 943 88 HOH HOH . E 4 HOH A 144 944 172 HOH HOH . E 4 HOH A 145 945 114 HOH HOH . E 4 HOH A 146 946 103 HOH HOH . E 4 HOH A 147 947 144 HOH HOH . E 4 HOH A 148 948 44 HOH HOH . E 4 HOH A 149 949 102 HOH HOH . E 4 HOH A 150 950 14 HOH HOH . E 4 HOH A 151 951 174 HOH HOH . E 4 HOH A 152 952 40 HOH HOH . E 4 HOH A 153 953 97 HOH HOH . E 4 HOH A 154 954 140 HOH HOH . E 4 HOH A 155 955 119 HOH HOH . E 4 HOH A 156 956 81 HOH HOH . E 4 HOH A 157 957 71 HOH HOH . E 4 HOH A 158 958 107 HOH HOH . E 4 HOH A 159 959 181 HOH HOH . E 4 HOH A 160 960 166 HOH HOH . E 4 HOH A 161 961 50 HOH HOH . E 4 HOH A 162 962 136 HOH HOH . E 4 HOH A 163 963 46 HOH HOH . E 4 HOH A 164 964 180 HOH HOH . E 4 HOH A 165 965 12 HOH HOH . E 4 HOH A 166 966 149 HOH HOH . E 4 HOH A 167 967 161 HOH HOH . E 4 HOH A 168 968 133 HOH HOH . E 4 HOH A 169 969 118 HOH HOH . E 4 HOH A 170 970 156 HOH HOH . E 4 HOH A 171 971 84 HOH HOH . E 4 HOH A 172 972 34 HOH HOH . E 4 HOH A 173 973 173 HOH HOH . E 4 HOH A 174 974 73 HOH HOH . E 4 HOH A 175 975 129 HOH HOH . E 4 HOH A 176 976 146 HOH HOH . E 4 HOH A 177 977 66 HOH HOH . E 4 HOH A 178 978 178 HOH HOH . E 4 HOH A 179 979 163 HOH HOH . E 4 HOH A 180 980 154 HOH HOH . E 4 HOH A 181 981 123 HOH HOH . E 4 HOH A 182 982 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 1E8 . . . B 2 -17.888 4.645 -18.815 1 12.03 ? N1 1E8 701 A 1 HETATM 2 C C2 1E8 . . . B 2 -16.874 4.811 -19.662 1 12.48 ? C2 1E8 701 A 1 HETATM 3 N N3 1E8 . . . B 2 -15.745 5.43 -19.376 1 12.58 ? N3 1E8 701 A 1 HETATM 4 C C4 1E8 . . . B 2 -15.551 5.786 -18.127 1 12.49 ? C4 1E8 701 A 1 HETATM 5 C C5 1E8 . . . B 2 -16.541 5.577 -17.144 1 11.02 ? C5 1E8 701 A 1 HETATM 6 C C6 1E8 . . . B 2 -17.751 4.988 -17.544 1 11.75 ? C6 1E8 701 A 1 HETATM 7 C CAA 1E8 . . . B 2 -10.13 10.788 -20.538 1 28.85 ? CAA 1E8 701 A 1 HETATM 8 N NAB 1E8 . . . B 2 -18.827 4.848 -16.726 1 11.34 ? NAB 1E8 701 A 1 HETATM 9 O OAC 1E8 . . . B 2 -12.824 9.1 -20.997 1 16.11 ? OAC 1E8 701 A 1 HETATM 10 C CAD 1E8 . . . B 2 -10.479 9.326 -20.783 1 22.19 ? CAD 1E8 701 A 1 HETATM 11 C CAE 1E8 . . . B 2 -21.059 8.248 -9.178 1 17.32 ? CAE 1E8 701 A 1 HETATM 12 C CAF 1E8 . . . B 2 -21.134 7.854 -10.513 1 16.71 ? CAF 1E8 701 A 1 HETATM 13 C CAG 1E8 . . . B 2 -19.997 7.837 -8.382 1 16.51 ? CAG 1E8 701 A 1 HETATM 14 C CAI 1E8 . . . B 2 -20.118 7.109 -11.085 1 14.17 ? CAI 1E8 701 A 1 HETATM 15 C CAJ 1E8 . . . B 2 -19.031 6.997 -8.923 1 15.63 ? CAJ 1E8 701 A 1 HETATM 16 C CAK 1E8 . . . B 2 -17.405 4.77 -12.711 1 14.94 ? CAK 1E8 701 A 1 HETATM 17 C CAL 1E8 . . . B 2 -17.216 7.184 -12.552 1 14.8 ? CAL 1E8 701 A 1 HETATM 18 C CAM 1E8 . . . B 2 -16.898 4.838 -13.997 1 13.82 ? CAM 1E8 701 A 1 HETATM 19 C CAN 1E8 . . . B 2 -16.71 7.251 -13.825 1 15.96 ? CAN 1E8 701 A 1 HETATM 20 C CAO 1E8 . . . B 2 -10.736 7.001 -17.752 1 20.03 ? CAO 1E8 701 A 1 HETATM 21 C CAP 1E8 . . . B 2 -12.076 6.352 -17.316 1 18.17 ? CAP 1E8 701 A 1 HETATM 22 C CAQ 1E8 . . . B 2 -10.881 8.521 -17.963 1 20.12 ? CAQ 1E8 701 A 1 HETATM 23 C CAR 1E8 . . . B 2 -13.322 8.318 -18.391 1 16.15 ? CAR 1E8 701 A 1 HETATM 24 N NAU 1E8 . . . B 2 -14.805 6.579 -16.201 1 14.53 ? NAU 1E8 701 A 1 HETATM 25 O OAV 1E8 . . . B 2 -18.037 5.875 -10.713 1 16.48 ? OAV 1E8 701 A 1 HETATM 26 C CAW 1E8 . . . B 2 -11.861 9.049 -20.232 1 18.53 ? CAW 1E8 701 A 1 HETATM 27 C CAY 1E8 . . . B 2 -19.051 6.685 -10.275 1 13.74 ? CAY 1E8 701 A 1 HETATM 28 C CAZ 1E8 . . . B 2 -17.577 5.952 -11.998 1 14.58 ? CAZ 1E8 701 A 1 HETATM 29 C CBA 1E8 . . . B 2 -16.558 6.068 -14.557 1 13.69 ? CBA 1E8 701 A 1 HETATM 30 C CBB 1E8 . . . B 2 -15.984 6.093 -15.909 1 12.65 ? CBB 1E8 701 A 1 HETATM 31 C CBE 1E8 . . . B 2 -13.276 6.786 -18.186 1 13.56 ? CBE 1E8 701 A 1 HETATM 32 N NBF 1E8 . . . B 2 -14.522 6.409 -17.534 1 13.31 ? NBF 1E8 701 A 1 HETATM 33 N NBG 1E8 . . . B 2 -12.002 8.701 -18.928 1 17.02 ? NBG 1E8 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #