data_5P9M # _model_server_result.job_id gfy34EbgGSE_b4NKqbLsaw _model_server_result.datetime_utc '2024-11-24 16:28:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5p9m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 5P9M # _exptl.entry_id 5P9M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.496 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-azanyl-9-[(3~{R})-1-[(~{E})-but-2-enoyl]pyrrolidin-3-yl]-7-(4-phenoxyphenyl)purin-8-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5P9M _cell.length_a 70.958 _cell.length_b 104.377 _cell.length_c 38.107 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5P9M _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 101 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 481 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C19 _struct_conn.ptnr2_label_comp_id 7GB _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 7GB _struct_conn.ptnr2_auth_seq_id 701 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.67 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H24 N6 O3' _chem_comp.formula_weight 456.496 _chem_comp.id 7GB _chem_comp.mon_nstd_flag . _chem_comp.name 6-azanyl-9-[(3~{R})-1-[(~{E})-but-2-enoyl]pyrrolidin-3-yl]-7-(4-phenoxyphenyl)purin-8-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 C34 7GB doub 1 n y C33 C32 7GB sing 2 n y C34 C29 7GB sing 3 n y C32 C31 7GB doub 4 n y C29 O28 7GB sing 5 n n C29 C30 7GB doub 6 n y C31 C30 7GB sing 7 n y O28 C25 7GB sing 8 n n C25 C24 7GB doub 9 n y C25 C26 7GB sing 10 n y C24 C23 7GB sing 11 n y C26 C27 7GB doub 12 n y C23 C22 7GB doub 13 n y C27 C22 7GB sing 14 n y C22 N9 7GB sing 15 n n O10 C8 7GB doub 16 n n N9 C8 7GB sing 17 n n N9 C5 7GB sing 18 n n O17 C16 7GB doub 19 n n C8 N7 7GB sing 20 n n N21 C6 7GB sing 21 n n C18 C16 7GB sing 22 n n C18 C19 7GB doub 23 e n C16 N14 7GB sing 24 n n C5 C6 7GB doub 25 n y C5 C4 7GB sing 26 n y C6 N1 7GB sing 27 n y C20 C19 7GB sing 28 n n N7 C4 7GB sing 29 n n N7 C11 7GB sing 30 n n C12 C13 7GB sing 31 n n C12 C11 7GB sing 32 n n N14 C13 7GB sing 33 n n N14 C15 7GB sing 34 n n C4 N3 7GB doub 35 n y C11 C15 7GB sing 36 n n N1 C2 7GB doub 37 n y N3 C2 7GB sing 38 n y C2 H1 7GB sing 39 n n C11 H2 7GB sing 40 n n C12 H3 7GB sing 41 n n C12 H4 7GB sing 42 n n C13 H5 7GB sing 43 n n C13 H6 7GB sing 44 n n C15 H7 7GB sing 45 n n C15 H8 7GB sing 46 n n C19 H9 7GB sing 47 n n C20 H10 7GB sing 48 n n C20 H11 7GB sing 49 n n C20 H12 7GB sing 50 n n C24 H13 7GB sing 51 n n C27 H14 7GB sing 52 n n C30 H15 7GB sing 53 n n C31 H16 7GB sing 54 n n C32 H17 7GB sing 55 n n C33 H18 7GB sing 56 n n C34 H19 7GB sing 57 n n C18 H20 7GB sing 58 n n N21 H21 7GB sing 59 n n N21 H22 7GB sing 60 n n C23 H23 7GB sing 61 n n C26 H24 7GB sing 62 n n # _atom_sites.entry_id 5P9M _atom_sites.fract_transf_matrix[1][1] 0.014093 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009581 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7GB A 1 701 0 7GB INH . C 3 DMS A 1 702 1 DMS DMS . D 4 HOH A 1 801 182 HOH HOH . D 4 HOH A 2 802 110 HOH HOH . D 4 HOH A 3 803 93 HOH HOH . D 4 HOH A 4 804 140 HOH HOH . D 4 HOH A 5 805 163 HOH HOH . D 4 HOH A 6 806 161 HOH HOH . D 4 HOH A 7 807 66 HOH HOH . D 4 HOH A 8 808 157 HOH HOH . D 4 HOH A 9 809 94 HOH HOH . D 4 HOH A 10 810 187 HOH HOH . D 4 HOH A 11 811 77 HOH HOH . D 4 HOH A 12 812 81 HOH HOH . D 4 HOH A 13 813 21 HOH HOH . D 4 HOH A 14 814 86 HOH HOH . D 4 HOH A 15 815 148 HOH HOH . D 4 HOH A 16 816 188 HOH HOH . D 4 HOH A 17 817 106 HOH HOH . D 4 HOH A 18 818 107 HOH HOH . D 4 HOH A 19 819 63 HOH HOH . D 4 HOH A 20 820 173 HOH HOH . D 4 HOH A 21 821 109 HOH HOH . D 4 HOH A 22 822 116 HOH HOH . D 4 HOH A 23 823 90 HOH HOH . D 4 HOH A 24 824 11 HOH HOH . D 4 HOH A 25 825 134 HOH HOH . D 4 HOH A 26 826 18 HOH HOH . D 4 HOH A 27 827 78 HOH HOH . D 4 HOH A 28 828 129 HOH HOH . D 4 HOH A 29 829 179 HOH HOH . D 4 HOH A 30 830 53 HOH HOH . D 4 HOH A 31 831 14 HOH HOH . D 4 HOH A 32 832 137 HOH HOH . D 4 HOH A 33 833 162 HOH HOH . D 4 HOH A 34 834 101 HOH HOH . D 4 HOH A 35 835 121 HOH HOH . D 4 HOH A 36 836 75 HOH HOH . D 4 HOH A 37 837 82 HOH HOH . D 4 HOH A 38 838 146 HOH HOH . D 4 HOH A 39 839 83 HOH HOH . D 4 HOH A 40 840 117 HOH HOH . D 4 HOH A 41 841 114 HOH HOH . D 4 HOH A 42 842 3 HOH HOH . D 4 HOH A 43 843 184 HOH HOH . D 4 HOH A 44 844 31 HOH HOH . D 4 HOH A 45 845 20 HOH HOH . D 4 HOH A 46 846 119 HOH HOH . D 4 HOH A 47 847 58 HOH HOH . D 4 HOH A 48 848 41 HOH HOH . D 4 HOH A 49 849 51 HOH HOH . D 4 HOH A 50 850 16 HOH HOH . D 4 HOH A 51 851 46 HOH HOH . D 4 HOH A 52 852 6 HOH HOH . D 4 HOH A 53 853 145 HOH HOH . D 4 HOH A 54 854 48 HOH HOH . D 4 HOH A 55 855 64 HOH HOH . D 4 HOH A 56 856 4 HOH HOH . D 4 HOH A 57 857 166 HOH HOH . D 4 HOH A 58 858 92 HOH HOH . D 4 HOH A 59 859 9 HOH HOH . D 4 HOH A 60 860 7 HOH HOH . D 4 HOH A 61 861 60 HOH HOH . D 4 HOH A 62 862 91 HOH HOH . D 4 HOH A 63 863 32 HOH HOH . D 4 HOH A 64 864 70 HOH HOH . D 4 HOH A 65 865 178 HOH HOH . D 4 HOH A 66 866 19 HOH HOH . D 4 HOH A 67 867 23 HOH HOH . D 4 HOH A 68 868 138 HOH HOH . D 4 HOH A 69 869 17 HOH HOH . D 4 HOH A 70 870 88 HOH HOH . D 4 HOH A 71 871 103 HOH HOH . D 4 HOH A 72 872 39 HOH HOH . D 4 HOH A 73 873 15 HOH HOH . D 4 HOH A 74 874 65 HOH HOH . D 4 HOH A 75 875 98 HOH HOH . D 4 HOH A 76 876 80 HOH HOH . D 4 HOH A 77 877 10 HOH HOH . D 4 HOH A 78 878 95 HOH HOH . D 4 HOH A 79 879 24 HOH HOH . D 4 HOH A 80 880 59 HOH HOH . D 4 HOH A 81 881 36 HOH HOH . D 4 HOH A 82 882 8 HOH HOH . D 4 HOH A 83 883 159 HOH HOH . D 4 HOH A 84 884 30 HOH HOH . D 4 HOH A 85 885 97 HOH HOH . D 4 HOH A 86 886 177 HOH HOH . D 4 HOH A 87 887 38 HOH HOH . D 4 HOH A 88 888 126 HOH HOH . D 4 HOH A 89 889 168 HOH HOH . D 4 HOH A 90 890 180 HOH HOH . D 4 HOH A 91 891 40 HOH HOH . D 4 HOH A 92 892 142 HOH HOH . D 4 HOH A 93 893 76 HOH HOH . D 4 HOH A 94 894 96 HOH HOH . D 4 HOH A 95 895 172 HOH HOH . D 4 HOH A 96 896 164 HOH HOH . D 4 HOH A 97 897 112 HOH HOH . D 4 HOH A 98 898 29 HOH HOH . D 4 HOH A 99 899 189 HOH HOH . D 4 HOH A 100 900 122 HOH HOH . D 4 HOH A 101 901 175 HOH HOH . D 4 HOH A 102 902 50 HOH HOH . D 4 HOH A 103 903 35 HOH HOH . D 4 HOH A 104 904 55 HOH HOH . D 4 HOH A 105 905 22 HOH HOH . D 4 HOH A 106 906 69 HOH HOH . D 4 HOH A 107 907 1 HOH HOH . D 4 HOH A 108 908 49 HOH HOH . D 4 HOH A 109 909 79 HOH HOH . D 4 HOH A 110 910 115 HOH HOH . D 4 HOH A 111 911 100 HOH HOH . D 4 HOH A 112 912 123 HOH HOH . D 4 HOH A 113 913 28 HOH HOH . D 4 HOH A 114 914 42 HOH HOH . D 4 HOH A 115 915 99 HOH HOH . D 4 HOH A 116 916 87 HOH HOH . D 4 HOH A 117 917 33 HOH HOH . D 4 HOH A 118 918 57 HOH HOH . D 4 HOH A 119 919 108 HOH HOH . D 4 HOH A 120 920 37 HOH HOH . D 4 HOH A 121 921 167 HOH HOH . D 4 HOH A 122 922 26 HOH HOH . D 4 HOH A 123 923 165 HOH HOH . D 4 HOH A 124 924 2 HOH HOH . D 4 HOH A 125 925 52 HOH HOH . D 4 HOH A 126 926 118 HOH HOH . D 4 HOH A 127 927 174 HOH HOH . D 4 HOH A 128 928 67 HOH HOH . D 4 HOH A 129 929 43 HOH HOH . D 4 HOH A 130 930 124 HOH HOH . D 4 HOH A 131 931 84 HOH HOH . D 4 HOH A 132 932 151 HOH HOH . D 4 HOH A 133 933 71 HOH HOH . D 4 HOH A 134 934 27 HOH HOH . D 4 HOH A 135 935 176 HOH HOH . D 4 HOH A 136 936 127 HOH HOH . D 4 HOH A 137 937 45 HOH HOH . D 4 HOH A 138 938 149 HOH HOH . D 4 HOH A 139 939 158 HOH HOH . D 4 HOH A 140 940 147 HOH HOH . D 4 HOH A 141 941 34 HOH HOH . D 4 HOH A 142 942 131 HOH HOH . D 4 HOH A 143 943 169 HOH HOH . D 4 HOH A 144 944 185 HOH HOH . D 4 HOH A 145 945 105 HOH HOH . D 4 HOH A 146 946 144 HOH HOH . D 4 HOH A 147 947 56 HOH HOH . D 4 HOH A 148 948 113 HOH HOH . D 4 HOH A 149 949 130 HOH HOH . D 4 HOH A 150 950 72 HOH HOH . D 4 HOH A 151 951 44 HOH HOH . D 4 HOH A 152 952 5 HOH HOH . D 4 HOH A 153 953 150 HOH HOH . D 4 HOH A 154 954 74 HOH HOH . D 4 HOH A 155 955 12 HOH HOH . D 4 HOH A 156 956 139 HOH HOH . D 4 HOH A 157 957 186 HOH HOH . D 4 HOH A 158 958 143 HOH HOH . D 4 HOH A 159 959 54 HOH HOH . D 4 HOH A 160 960 13 HOH HOH . D 4 HOH A 161 961 141 HOH HOH . D 4 HOH A 162 962 102 HOH HOH . D 4 HOH A 163 963 61 HOH HOH . D 4 HOH A 164 964 181 HOH HOH . D 4 HOH A 165 965 89 HOH HOH . D 4 HOH A 166 966 135 HOH HOH . D 4 HOH A 167 967 120 HOH HOH . D 4 HOH A 168 968 68 HOH HOH . D 4 HOH A 169 969 133 HOH HOH . D 4 HOH A 170 970 171 HOH HOH . D 4 HOH A 171 971 104 HOH HOH . D 4 HOH A 172 972 73 HOH HOH . D 4 HOH A 173 973 154 HOH HOH . D 4 HOH A 174 974 152 HOH HOH . D 4 HOH A 175 975 47 HOH HOH . D 4 HOH A 176 976 170 HOH HOH . D 4 HOH A 177 977 183 HOH HOH . D 4 HOH A 178 978 125 HOH HOH . D 4 HOH A 179 979 85 HOH HOH . D 4 HOH A 180 980 160 HOH HOH . D 4 HOH A 181 981 155 HOH HOH . D 4 HOH A 182 982 153 HOH HOH . D 4 HOH A 183 983 128 HOH HOH . D 4 HOH A 184 984 62 HOH HOH . D 4 HOH A 185 985 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 7GB . . . B 2 -18.784 4.886 0.533 1 12.56 ? C2 7GB 701 A 1 HETATM 2 C C8 7GB . . . B 2 -20.991 6.709 -2.77 1 14.3 ? C8 7GB 701 A 1 HETATM 3 C C11 7GB . . . B 2 -22.493 6.75 -0.67 1 16.94 ? C11 7GB 701 A 1 HETATM 4 C C12 7GB . . . B 2 -23.862 6.42 -1.248 1 17.34 ? C12 7GB 701 A 1 HETATM 5 C C13 7GB . . . B 2 -24.789 7.606 -1.109 1 21.14 ? C13 7GB 701 A 1 HETATM 6 C C15 7GB . . . B 2 -22.568 8.28 -0.422 1 19.83 ? C15 7GB 701 A 1 HETATM 7 C C16 7GB . . . B 2 -23.781 9.67 -2.091 1 26.07 ? C16 7GB 701 A 1 HETATM 8 O O17 7GB . . . B 2 -24.694 9.808 -2.89 1 29.28 ? O17 7GB 701 A 1 HETATM 9 C C19 7GB . . . B 2 -22.271 11.475 -1.188 1 22.7 ? C19 7GB 701 A 1 HETATM 10 C C20 7GB . . . B 2 -21.152 12.445 -1.508 1 23.82 ? C20 7GB 701 A 1 HETATM 11 C C22 7GB . . . B 2 -19.215 6.338 -4.342 1 14.18 ? C22 7GB 701 A 1 HETATM 12 C C24 7GB . . . B 2 -18.465 7.357 -6.422 1 14.87 ? C24 7GB 701 A 1 HETATM 13 C C27 7GB . . . B 2 -19.024 5.111 -4.99 1 14.15 ? C27 7GB 701 A 1 HETATM 14 O O28 7GB . . . B 2 -17.79 6.059 -8.248 1 14.61 ? O28 7GB 701 A 1 HETATM 15 C C30 7GB . . . B 2 -15.6 7.099 -7.923 1 13.79 ? C30 7GB 701 A 1 HETATM 16 C C31 7GB . . . B 2 -14.54 7.754 -8.495 1 15.34 ? C31 7GB 701 A 1 HETATM 17 C C32 7GB . . . B 2 -14.582 8.19 -9.813 1 16.03 ? C32 7GB 701 A 1 HETATM 18 C C33 7GB . . . B 2 -15.676 7.935 -10.587 1 15.57 ? C33 7GB 701 A 1 HETATM 19 C C34 7GB . . . B 2 -16.722 7.196 -10.018 1 14.86 ? C34 7GB 701 A 1 HETATM 20 N N1 7GB . . . B 2 -17.837 4.73 -0.385 1 11.99 ? N1 7GB 701 A 1 HETATM 21 N N3 7GB . . . B 2 -19.99 5.396 0.303 1 12.98 ? N3 7GB 701 A 1 HETATM 22 C C4 7GB . . . B 2 -20.249 5.859 -0.944 1 13.37 ? C4 7GB 701 A 1 HETATM 23 C C5 7GB . . . B 2 -19.273 5.711 -1.993 1 12 ? C5 7GB 701 A 1 HETATM 24 C C6 7GB . . . B 2 -17.973 5.185 -1.672 1 11.22 ? C6 7GB 701 A 1 HETATM 25 N N7 7GB . . . B 2 -21.304 6.465 -1.489 1 14.3 ? N7 7GB 701 A 1 HETATM 26 N N9 7GB . . . B 2 -19.745 6.321 -3.114 1 13.45 ? N9 7GB 701 A 1 HETATM 27 O O10 7GB . . . B 2 -21.808 7.319 -3.57 1 17.28 ? O10 7GB 701 A 1 HETATM 28 N N14 7GB . . . B 2 -23.718 8.627 -1.222 1 21.13 ? N14 7GB 701 A 1 HETATM 29 C C18 7GB . . . B 2 -22.681 10.66 -2.203 1 23.84 ? C18 7GB 701 A 1 HETATM 30 N N21 7GB . . . B 2 -16.867 5.049 -2.534 1 11.08 ? N21 7GB 701 A 1 HETATM 31 C C23 7GB . . . B 2 -18.973 7.463 -5.162 1 14.32 ? C23 7GB 701 A 1 HETATM 32 C C25 7GB . . . B 2 -18.24 6.123 -6.997 1 15.87 ? C25 7GB 701 A 1 HETATM 33 C C26 7GB . . . B 2 -18.494 4.977 -6.265 1 14.68 ? C26 7GB 701 A 1 HETATM 34 C C29 7GB . . . B 2 -16.693 6.781 -8.714 1 13.48 ? C29 7GB 701 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #