data_5PA3 # _model_server_result.job_id X5xAFMMHk54pC7N2O5aeog _model_server_result.datetime_utc '2024-11-01 18:31:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5pa3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5PA3 # _exptl.entry_id 5PA3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.235 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S,5S)-1,2-DITHIANE-4,5-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5PA3 _cell.length_a 49.577 _cell.length_b 53.503 _cell.length_c 80.997 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 58 A SER 58 1_555 G K K . A K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc2 A OG SER 60 A SER 60 1_555 G K K . A K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc3 A OD1 ASP 141 A ASP 141 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc4 A OD2 ASP 169 A ASP 169 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc5 A OD1 ASN 170 A ASN 170 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc6 A O VAL 183 A VAL 183 1_555 F K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc7 A O ARG 184 A ARG 184 1_555 F K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc8 A O SER 186 A SER 186 1_555 F K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc9 A O PHE 189 A PHE 189 1_555 F K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc10 C O4 7JV . A 7JV 302 1_555 H MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc11 F K K . A K 305 1_555 I O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc12 F K K . A K 305 1_555 I O HOH . A HOH 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc13 G K K . A K 306 1_555 I O HOH . A HOH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc14 G K K . A K 306 1_555 I O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc15 G K K . A K 306 1_555 I O HOH . A HOH 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? metalc ? metalc16 H MG MG . A MG 307 1_555 I O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? # _chem_comp.formula 'C4 H8 O2 S2' _chem_comp.formula_weight 152.235 _chem_comp.id D1D _chem_comp.mon_nstd_flag . _chem_comp.name (4S,5S)-1,2-DITHIANE-4,5-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 D1D sing 120 n n S1 S4 D1D sing 121 n n C1 C2 D1D sing 122 n n C1 H1C1 D1D sing 123 n n C1 H1C2 D1D sing 124 n n C2 O2 D1D sing 125 n n C2 C3 D1D sing 126 n n C2 H2 D1D sing 127 n n O2 HA D1D sing 128 n n C3 O3 D1D sing 129 n n C3 C4 D1D sing 130 n n C3 H3 D1D sing 131 n n O3 HB D1D sing 132 n n C4 S4 D1D sing 133 n n C4 H4C1 D1D sing 134 n n C4 H4C2 D1D sing 135 n n # _atom_sites.entry_id 5PA3 _atom_sites.fract_transf_matrix[1][1] 0.020171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 1 SAH SAH . C 3 7JV A 1 302 1 7JV L0R . D 4 CL A 1 303 1 CL CL . E 5 D1D A 1 304 3223 D1D LIG . F 6 K A 1 305 1 K K . G 6 K A 1 306 2 K K . H 7 MG A 1 307 1 MG MG . I 8 HOH A 1 401 147 HOH HOH . I 8 HOH A 2 402 181 HOH HOH . I 8 HOH A 3 403 159 HOH HOH . I 8 HOH A 4 404 189 HOH HOH . I 8 HOH A 5 405 56 HOH HOH . I 8 HOH A 6 406 216 HOH HOH . I 8 HOH A 7 407 109 HOH HOH . I 8 HOH A 8 408 85 HOH HOH . I 8 HOH A 9 409 59 HOH HOH . I 8 HOH A 10 410 88 HOH HOH . I 8 HOH A 11 411 151 HOH HOH . I 8 HOH A 12 412 114 HOH HOH . I 8 HOH A 13 413 131 HOH HOH . I 8 HOH A 14 414 218 HOH HOH . I 8 HOH A 15 415 132 HOH HOH . I 8 HOH A 16 416 84 HOH HOH . I 8 HOH A 17 417 72 HOH HOH . I 8 HOH A 18 418 187 HOH HOH . I 8 HOH A 19 419 92 HOH HOH . I 8 HOH A 20 420 23 HOH HOH . I 8 HOH A 21 421 20 HOH HOH . I 8 HOH A 22 422 15 HOH HOH . I 8 HOH A 23 423 194 HOH HOH . I 8 HOH A 24 424 50 HOH HOH . I 8 HOH A 25 425 42 HOH HOH . I 8 HOH A 26 426 185 HOH HOH . I 8 HOH A 27 427 34 HOH HOH . I 8 HOH A 28 428 119 HOH HOH . I 8 HOH A 29 429 51 HOH HOH . I 8 HOH A 30 430 9 HOH HOH . I 8 HOH A 31 431 152 HOH HOH . I 8 HOH A 32 432 136 HOH HOH . I 8 HOH A 33 433 54 HOH HOH . I 8 HOH A 34 434 73 HOH HOH . I 8 HOH A 35 435 69 HOH HOH . I 8 HOH A 36 436 44 HOH HOH . I 8 HOH A 37 437 117 HOH HOH . I 8 HOH A 38 438 82 HOH HOH . I 8 HOH A 39 439 89 HOH HOH . I 8 HOH A 40 440 137 HOH HOH . I 8 HOH A 41 441 217 HOH HOH . I 8 HOH A 42 442 156 HOH HOH . I 8 HOH A 43 443 13 HOH HOH . I 8 HOH A 44 444 22 HOH HOH . I 8 HOH A 45 445 83 HOH HOH . I 8 HOH A 46 446 149 HOH HOH . I 8 HOH A 47 447 91 HOH HOH . I 8 HOH A 48 448 3 HOH HOH . I 8 HOH A 49 449 6 HOH HOH . I 8 HOH A 50 450 17 HOH HOH . I 8 HOH A 51 451 27 HOH HOH . I 8 HOH A 52 452 210 HOH HOH . I 8 HOH A 53 453 8 HOH HOH . I 8 HOH A 54 454 142 HOH HOH . I 8 HOH A 55 455 71 HOH HOH . I 8 HOH A 56 456 26 HOH HOH . I 8 HOH A 57 457 124 HOH HOH . I 8 HOH A 58 458 75 HOH HOH . I 8 HOH A 59 459 135 HOH HOH . I 8 HOH A 60 460 60 HOH HOH . I 8 HOH A 61 461 1 HOH HOH . I 8 HOH A 62 462 35 HOH HOH . I 8 HOH A 63 463 19 HOH HOH . I 8 HOH A 64 464 40 HOH HOH . I 8 HOH A 65 465 140 HOH HOH . I 8 HOH A 66 466 113 HOH HOH . I 8 HOH A 67 467 58 HOH HOH . I 8 HOH A 68 468 10 HOH HOH . I 8 HOH A 69 469 14 HOH HOH . I 8 HOH A 70 470 103 HOH HOH . I 8 HOH A 71 471 106 HOH HOH . I 8 HOH A 72 472 47 HOH HOH . I 8 HOH A 73 473 16 HOH HOH . I 8 HOH A 74 474 161 HOH HOH . I 8 HOH A 75 475 62 HOH HOH . I 8 HOH A 76 476 148 HOH HOH . I 8 HOH A 77 477 90 HOH HOH . I 8 HOH A 78 478 7 HOH HOH . I 8 HOH A 79 479 86 HOH HOH . I 8 HOH A 80 480 80 HOH HOH . I 8 HOH A 81 481 29 HOH HOH . I 8 HOH A 82 482 101 HOH HOH . I 8 HOH A 83 483 126 HOH HOH . I 8 HOH A 84 484 108 HOH HOH . I 8 HOH A 85 485 46 HOH HOH . I 8 HOH A 86 486 133 HOH HOH . I 8 HOH A 87 487 157 HOH HOH . I 8 HOH A 88 488 5 HOH HOH . I 8 HOH A 89 489 172 HOH HOH . I 8 HOH A 90 490 212 HOH HOH . I 8 HOH A 91 491 153 HOH HOH . I 8 HOH A 92 492 134 HOH HOH . I 8 HOH A 93 493 4 HOH HOH . I 8 HOH A 94 494 30 HOH HOH . I 8 HOH A 95 495 182 HOH HOH . I 8 HOH A 96 496 31 HOH HOH . I 8 HOH A 97 497 78 HOH HOH . I 8 HOH A 98 498 2 HOH HOH . I 8 HOH A 99 499 175 HOH HOH . I 8 HOH A 100 500 193 HOH HOH . I 8 HOH A 101 501 99 HOH HOH . I 8 HOH A 102 502 70 HOH HOH . I 8 HOH A 103 503 68 HOH HOH . I 8 HOH A 104 504 195 HOH HOH . I 8 HOH A 105 505 64 HOH HOH . I 8 HOH A 106 506 36 HOH HOH . I 8 HOH A 107 507 48 HOH HOH . I 8 HOH A 108 508 158 HOH HOH . I 8 HOH A 109 509 81 HOH HOH . I 8 HOH A 110 510 43 HOH HOH . I 8 HOH A 111 511 112 HOH HOH . I 8 HOH A 112 512 206 HOH HOH . I 8 HOH A 113 513 63 HOH HOH . I 8 HOH A 114 514 171 HOH HOH . I 8 HOH A 115 515 107 HOH HOH . I 8 HOH A 116 516 18 HOH HOH . I 8 HOH A 117 517 12 HOH HOH . I 8 HOH A 118 518 65 HOH HOH . I 8 HOH A 119 519 202 HOH HOH . I 8 HOH A 120 520 98 HOH HOH . I 8 HOH A 121 521 146 HOH HOH . I 8 HOH A 122 522 25 HOH HOH . I 8 HOH A 123 523 104 HOH HOH . I 8 HOH A 124 524 166 HOH HOH . I 8 HOH A 125 525 77 HOH HOH . I 8 HOH A 126 526 53 HOH HOH . I 8 HOH A 127 527 192 HOH HOH . I 8 HOH A 128 528 21 HOH HOH . I 8 HOH A 129 529 24 HOH HOH . I 8 HOH A 130 530 33 HOH HOH . I 8 HOH A 131 531 173 HOH HOH . I 8 HOH A 132 532 11 HOH HOH . I 8 HOH A 133 533 28 HOH HOH . I 8 HOH A 134 534 143 HOH HOH . I 8 HOH A 135 535 41 HOH HOH . I 8 HOH A 136 536 111 HOH HOH . I 8 HOH A 137 537 115 HOH HOH . I 8 HOH A 138 538 179 HOH HOH . I 8 HOH A 139 539 96 HOH HOH . I 8 HOH A 140 540 118 HOH HOH . I 8 HOH A 141 541 190 HOH HOH . I 8 HOH A 142 542 145 HOH HOH . I 8 HOH A 143 543 55 HOH HOH . I 8 HOH A 144 544 97 HOH HOH . I 8 HOH A 145 545 211 HOH HOH . I 8 HOH A 146 546 130 HOH HOH . I 8 HOH A 147 547 188 HOH HOH . I 8 HOH A 148 548 155 HOH HOH . I 8 HOH A 149 549 128 HOH HOH . I 8 HOH A 150 550 127 HOH HOH . I 8 HOH A 151 551 57 HOH HOH . I 8 HOH A 152 552 45 HOH HOH . I 8 HOH A 153 553 214 HOH HOH . I 8 HOH A 154 554 123 HOH HOH . I 8 HOH A 155 555 37 HOH HOH . I 8 HOH A 156 556 144 HOH HOH . I 8 HOH A 157 557 49 HOH HOH . I 8 HOH A 158 558 186 HOH HOH . I 8 HOH A 159 559 32 HOH HOH . I 8 HOH A 160 560 204 HOH HOH . I 8 HOH A 161 561 160 HOH HOH . I 8 HOH A 162 562 150 HOH HOH . I 8 HOH A 163 563 102 HOH HOH . I 8 HOH A 164 564 38 HOH HOH . I 8 HOH A 165 565 191 HOH HOH . I 8 HOH A 166 566 76 HOH HOH . I 8 HOH A 167 567 116 HOH HOH . I 8 HOH A 168 568 125 HOH HOH . I 8 HOH A 169 569 141 HOH HOH . I 8 HOH A 170 570 74 HOH HOH . I 8 HOH A 171 571 139 HOH HOH . I 8 HOH A 172 572 177 HOH HOH . I 8 HOH A 173 573 122 HOH HOH . I 8 HOH A 174 574 208 HOH HOH . I 8 HOH A 175 575 39 HOH HOH . I 8 HOH A 176 576 209 HOH HOH . I 8 HOH A 177 577 121 HOH HOH . I 8 HOH A 178 578 138 HOH HOH . I 8 HOH A 179 579 110 HOH HOH . I 8 HOH A 180 580 184 HOH HOH . I 8 HOH A 181 581 67 HOH HOH . I 8 HOH A 182 582 129 HOH HOH . I 8 HOH A 183 583 52 HOH HOH . I 8 HOH A 184 584 176 HOH HOH . I 8 HOH A 185 585 163 HOH HOH . I 8 HOH A 186 586 183 HOH HOH . I 8 HOH A 187 587 178 HOH HOH . I 8 HOH A 188 588 207 HOH HOH . I 8 HOH A 189 589 213 HOH HOH . I 8 HOH A 190 590 162 HOH HOH . I 8 HOH A 191 591 215 HOH HOH . I 8 HOH A 192 592 94 HOH HOH . I 8 HOH A 193 593 61 HOH HOH . I 8 HOH A 194 594 165 HOH HOH . I 8 HOH A 195 595 170 HOH HOH . I 8 HOH A 196 596 105 HOH HOH . I 8 HOH A 197 597 199 HOH HOH . I 8 HOH A 198 598 66 HOH HOH . I 8 HOH A 199 599 164 HOH HOH . I 8 HOH A 200 600 154 HOH HOH . I 8 HOH A 201 601 120 HOH HOH . I 8 HOH A 202 602 174 HOH HOH . I 8 HOH A 203 603 198 HOH HOH . I 8 HOH A 204 604 197 HOH HOH . I 8 HOH A 205 605 95 HOH HOH . I 8 HOH A 206 606 201 HOH HOH . I 8 HOH A 207 607 100 HOH HOH . I 8 HOH A 208 608 93 HOH HOH . I 8 HOH A 209 609 168 HOH HOH . I 8 HOH A 210 610 169 HOH HOH . I 8 HOH A 211 611 87 HOH HOH . I 8 HOH A 212 612 167 HOH HOH . I 8 HOH A 213 613 180 HOH HOH . I 8 HOH A 214 614 203 HOH HOH . I 8 HOH A 215 615 79 HOH HOH . I 8 HOH A 216 616 205 HOH HOH . I 8 HOH A 217 617 200 HOH HOH . I 8 HOH A 218 618 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 D1D . . . E 5 4.073 20.356 19.94 1 23.41 ? S1 D1D 304 A 1 HETATM 2 C C1 D1D . . . E 5 4.494 19.811 18.25 1 22.46 ? C1 D1D 304 A 1 HETATM 3 C C2 D1D . . . E 5 3.255 19.26 17.521 1 22.33 ? C2 D1D 304 A 1 HETATM 4 O O2 D1D . . . E 5 3.52 18.879 16.205 1 22.74 ? O2 D1D 304 A 1 HETATM 5 C C3 D1D . . . E 5 2.712 17.976 18.183 1 21.46 ? C3 D1D 304 A 1 HETATM 6 O O3 D1D . . . E 5 1.691 17.429 17.34 1 19.1 ? O3 D1D 304 A 1 HETATM 7 C C4 D1D . . . E 5 2.199 18.094 19.63 1 21.11 ? C4 D1D 304 A 1 HETATM 8 S S4 D1D . . . E 5 3.571 18.592 20.732 1 25.44 ? S4 D1D 304 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #