data_5PAZ # _model_server_result.job_id z_X9bfuHMrwnYqlvN0alsQ _model_server_result.datetime_utc '2025-07-08 04:30:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5paz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":124}' # _entry.id 5PAZ # _exptl.entry_id 5PAZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5PAZ _cell.length_a 50.06 _cell.length_b 50.06 _cell.length_c 98.72 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PAZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 40 A HIS 40 1_555 B CU CU . A CU 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc2 A SG CYS 78 A CYS 78 1_555 B CU CU . A CU 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc3 A ND1 HIS 81 A HIS 81 1_555 B CU CU . A CU 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5PAZ _atom_sites.fract_transf_matrix[1][1] 0.019976 _atom_sites.fract_transf_matrix[1][2] 0.011533 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 124 124 CU CU . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1004 1004 HOH HOH . C 3 HOH A 4 1006 1006 HOH HOH . C 3 HOH A 5 1009 1009 HOH HOH . C 3 HOH A 6 1013 1013 HOH HOH . C 3 HOH A 7 1018 1018 HOH HOH . C 3 HOH A 8 1019 1019 HOH HOH . C 3 HOH A 9 1021 1021 HOH HOH . C 3 HOH A 10 1024 1024 HOH HOH . C 3 HOH A 11 1026 1026 HOH HOH . C 3 HOH A 12 1028 1028 HOH HOH . C 3 HOH A 13 1029 1029 HOH HOH . C 3 HOH A 14 1030 1030 HOH HOH . C 3 HOH A 15 1032 1032 HOH HOH . C 3 HOH A 16 1037 1037 HOH HOH . C 3 HOH A 17 1044 1044 HOH HOH . C 3 HOH A 18 1045 1045 HOH HOH . C 3 HOH A 19 1046 1046 HOH HOH . C 3 HOH A 20 1047 1047 HOH HOH . C 3 HOH A 21 1049 1049 HOH HOH . C 3 HOH A 22 1054 1054 HOH HOH . C 3 HOH A 23 1057 1057 HOH HOH . C 3 HOH A 24 1062 1062 HOH HOH . C 3 HOH A 25 1064 1064 HOH HOH . C 3 HOH A 26 1067 1067 HOH HOH . C 3 HOH A 27 1069 1069 HOH HOH . C 3 HOH A 28 1070 1070 HOH HOH . C 3 HOH A 29 1071 1071 HOH HOH . C 3 HOH A 30 1074 1074 HOH HOH . C 3 HOH A 31 1077 1077 HOH HOH . C 3 HOH A 32 1079 1079 HOH HOH . C 3 HOH A 33 1080 1080 HOH HOH . C 3 HOH A 34 1081 1081 HOH HOH . C 3 HOH A 35 1082 1082 HOH HOH . C 3 HOH A 36 1087 1087 HOH HOH . C 3 HOH A 37 1092 1092 HOH HOH . C 3 HOH A 38 1094 1094 HOH HOH . C 3 HOH A 39 1095 1095 HOH HOH . C 3 HOH A 40 1096 1096 HOH HOH . C 3 HOH A 41 1098 1098 HOH HOH . C 3 HOH A 42 1100 1100 HOH HOH . C 3 HOH A 43 1101 1101 HOH HOH . C 3 HOH A 44 1106 1106 HOH HOH . C 3 HOH A 45 1107 1107 HOH HOH . C 3 HOH A 46 1109 1109 HOH HOH . C 3 HOH A 47 1114 1114 HOH HOH . C 3 HOH A 48 2002 2002 HOH HOH . C 3 HOH A 49 2004 2004 HOH HOH . C 3 HOH A 50 2013 2013 HOH HOH . C 3 HOH A 51 2019 2019 HOH HOH . C 3 HOH A 52 2028 2028 HOH HOH . C 3 HOH A 53 2030 2030 HOH HOH . C 3 HOH A 54 2032 2032 HOH HOH . C 3 HOH A 55 2046 2046 HOH HOH . C 3 HOH A 56 2067 2067 HOH HOH . C 3 HOH A 57 2069 2069 HOH HOH . C 3 HOH A 58 2077 2077 HOH HOH . C 3 HOH A 59 2080 2080 HOH HOH . C 3 HOH A 60 2100 2100 HOH HOH . C 3 HOH A 61 2101 2101 HOH HOH . C 3 HOH A 62 2106 2106 HOH HOH . C 3 HOH A 63 2107 2107 HOH HOH . C 3 HOH A 64 2109 2109 HOH HOH . C 3 HOH A 65 2114 2114 HOH HOH . C 3 HOH A 66 3002 3002 HOH HOH . C 3 HOH A 67 3004 3004 HOH HOH . C 3 HOH A 68 3028 3028 HOH HOH . C 3 HOH A 69 3030 3030 HOH HOH . C 3 HOH A 70 3069 3069 HOH HOH . C 3 HOH A 71 3100 3100 HOH HOH . C 3 HOH A 72 3106 3106 HOH HOH . C 3 HOH A 73 3109 3109 HOH HOH . C 3 HOH A 74 4002 4002 HOH HOH . C 3 HOH A 75 4004 4004 HOH HOH . C 3 HOH A 76 4028 4028 HOH HOH . C 3 HOH A 77 4106 4106 HOH HOH . C 3 HOH A 78 5002 5002 HOH HOH . C 3 HOH A 79 5004 5004 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.009 _atom_site.Cartn_y 29.127 _atom_site.Cartn_z -0.894 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 124 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #