data_5PB9
#
_model_server_result.job_id            QeRl1XVMpBEGVaiZ4gHPAg 
_model_server_result.datetime_utc      '2024-11-22 13:20:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5pb9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2003}' 
#
_entry.id    5PB9 
#
_exptl.entry_id    5PB9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5PB9 
_cell.length_a            81.756 
_cell.length_b            96.541 
_cell.length_c            57.854 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5PB9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 101 n n 
C1 C2 EDO sing 102 n n 
C1 H11 EDO sing 103 n n 
C1 H12 EDO sing 104 n n 
O1 HO1 EDO sing 105 n n 
C2 O2 EDO sing 106 n n 
C2 H21 EDO sing 107 n n 
C2 H22 EDO sing 108 n n 
O2 HO2 EDO sing 109 n n 
#
_atom_sites.entry_id                     5PB9 
_atom_sites.fract_transf_matrix[1][1]    0.012232 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010358 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017285 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 2001 1 EDO EDO . 
C 2 EDO A 1 2002 2 EDO EDO . 
D 2 EDO A 1 2003 3 EDO EDO . 
E 3 53C A 1 2004 1 53C LIG . 
F 4 HOH A 1 2101 84 HOH HOH . 
F 4 HOH A 2 2102 72 HOH HOH . 
F 4 HOH A 3 2103 196 HOH HOH . 
F 4 HOH A 4 2104 61 HOH HOH . 
F 4 HOH A 5 2105 92 HOH HOH . 
F 4 HOH A 6 2106 154 HOH HOH . 
F 4 HOH A 7 2107 36 HOH HOH . 
F 4 HOH A 8 2108 23 HOH HOH . 
F 4 HOH A 9 2109 40 HOH HOH . 
F 4 HOH A 10 2110 114 HOH HOH . 
F 4 HOH A 11 2111 14 HOH HOH . 
F 4 HOH A 12 2112 100 HOH HOH . 
F 4 HOH A 13 2113 37 HOH HOH . 
F 4 HOH A 14 2114 6 HOH HOH . 
F 4 HOH A 15 2115 7 HOH HOH . 
F 4 HOH A 16 2116 38 HOH HOH . 
F 4 HOH A 17 2117 47 HOH HOH . 
F 4 HOH A 18 2118 39 HOH HOH . 
F 4 HOH A 19 2119 75 HOH HOH . 
F 4 HOH A 20 2120 46 HOH HOH . 
F 4 HOH A 21 2121 117 HOH HOH . 
F 4 HOH A 22 2122 158 HOH HOH . 
F 4 HOH A 23 2123 44 HOH HOH . 
F 4 HOH A 24 2124 169 HOH HOH . 
F 4 HOH A 25 2125 74 HOH HOH . 
F 4 HOH A 26 2126 21 HOH HOH . 
F 4 HOH A 27 2127 26 HOH HOH . 
F 4 HOH A 28 2128 20 HOH HOH . 
F 4 HOH A 29 2129 91 HOH HOH . 
F 4 HOH A 30 2130 145 HOH HOH . 
F 4 HOH A 31 2131 163 HOH HOH . 
F 4 HOH A 32 2132 48 HOH HOH . 
F 4 HOH A 33 2133 25 HOH HOH . 
F 4 HOH A 34 2134 62 HOH HOH . 
F 4 HOH A 35 2135 35 HOH HOH . 
F 4 HOH A 36 2136 34 HOH HOH . 
F 4 HOH A 37 2137 2 HOH HOH . 
F 4 HOH A 38 2138 70 HOH HOH . 
F 4 HOH A 39 2139 148 HOH HOH . 
F 4 HOH A 40 2140 205 HOH HOH . 
F 4 HOH A 41 2141 126 HOH HOH . 
F 4 HOH A 42 2142 190 HOH HOH . 
F 4 HOH A 43 2143 116 HOH HOH . 
F 4 HOH A 44 2144 207 HOH HOH . 
F 4 HOH A 45 2145 113 HOH HOH . 
F 4 HOH A 46 2146 139 HOH HOH . 
F 4 HOH A 47 2147 137 HOH HOH . 
F 4 HOH A 48 2148 68 HOH HOH . 
F 4 HOH A 49 2149 52 HOH HOH . 
F 4 HOH A 50 2150 16 HOH HOH . 
F 4 HOH A 51 2151 45 HOH HOH . 
F 4 HOH A 52 2152 28 HOH HOH . 
F 4 HOH A 53 2153 93 HOH HOH . 
F 4 HOH A 54 2154 9 HOH HOH . 
F 4 HOH A 55 2155 156 HOH HOH . 
F 4 HOH A 56 2156 10 HOH HOH . 
F 4 HOH A 57 2157 17 HOH HOH . 
F 4 HOH A 58 2158 206 HOH HOH . 
F 4 HOH A 59 2159 19 HOH HOH . 
F 4 HOH A 60 2160 146 HOH HOH . 
F 4 HOH A 61 2161 32 HOH HOH . 
F 4 HOH A 62 2162 81 HOH HOH . 
F 4 HOH A 63 2163 73 HOH HOH . 
F 4 HOH A 64 2164 5 HOH HOH . 
F 4 HOH A 65 2165 30 HOH HOH . 
F 4 HOH A 66 2166 88 HOH HOH . 
F 4 HOH A 67 2167 41 HOH HOH . 
F 4 HOH A 68 2168 50 HOH HOH . 
F 4 HOH A 69 2169 1 HOH HOH . 
F 4 HOH A 70 2170 144 HOH HOH . 
F 4 HOH A 71 2171 53 HOH HOH . 
F 4 HOH A 72 2172 149 HOH HOH . 
F 4 HOH A 73 2173 191 HOH HOH . 
F 4 HOH A 74 2174 24 HOH HOH . 
F 4 HOH A 75 2175 12 HOH HOH . 
F 4 HOH A 76 2176 54 HOH HOH . 
F 4 HOH A 77 2177 120 HOH HOH . 
F 4 HOH A 78 2178 193 HOH HOH . 
F 4 HOH A 79 2179 63 HOH HOH . 
F 4 HOH A 80 2180 27 HOH HOH . 
F 4 HOH A 81 2181 15 HOH HOH . 
F 4 HOH A 82 2182 29 HOH HOH . 
F 4 HOH A 83 2183 51 HOH HOH . 
F 4 HOH A 84 2184 4 HOH HOH . 
F 4 HOH A 85 2185 107 HOH HOH . 
F 4 HOH A 86 2186 174 HOH HOH . 
F 4 HOH A 87 2187 76 HOH HOH . 
F 4 HOH A 88 2188 90 HOH HOH . 
F 4 HOH A 89 2189 101 HOH HOH . 
F 4 HOH A 90 2190 80 HOH HOH . 
F 4 HOH A 91 2191 173 HOH HOH . 
F 4 HOH A 92 2192 57 HOH HOH . 
F 4 HOH A 93 2193 105 HOH HOH . 
F 4 HOH A 94 2194 56 HOH HOH . 
F 4 HOH A 95 2195 64 HOH HOH . 
F 4 HOH A 96 2196 18 HOH HOH . 
F 4 HOH A 97 2197 65 HOH HOH . 
F 4 HOH A 98 2198 8 HOH HOH . 
F 4 HOH A 99 2199 164 HOH HOH . 
F 4 HOH A 100 2200 59 HOH HOH . 
F 4 HOH A 101 2201 66 HOH HOH . 
F 4 HOH A 102 2202 172 HOH HOH . 
F 4 HOH A 103 2203 189 HOH HOH . 
F 4 HOH A 104 2204 171 HOH HOH . 
F 4 HOH A 105 2205 166 HOH HOH . 
F 4 HOH A 106 2206 33 HOH HOH . 
F 4 HOH A 107 2207 77 HOH HOH . 
F 4 HOH A 108 2208 182 HOH HOH . 
F 4 HOH A 109 2209 181 HOH HOH . 
F 4 HOH A 110 2210 178 HOH HOH . 
F 4 HOH A 111 2211 152 HOH HOH . 
F 4 HOH A 112 2212 103 HOH HOH . 
F 4 HOH A 113 2213 106 HOH HOH . 
F 4 HOH A 114 2214 3 HOH HOH . 
F 4 HOH A 115 2215 82 HOH HOH . 
F 4 HOH A 116 2216 95 HOH HOH . 
F 4 HOH A 117 2217 129 HOH HOH . 
F 4 HOH A 118 2218 85 HOH HOH . 
F 4 HOH A 119 2219 13 HOH HOH . 
F 4 HOH A 120 2220 147 HOH HOH . 
F 4 HOH A 121 2221 138 HOH HOH . 
F 4 HOH A 122 2222 22 HOH HOH . 
F 4 HOH A 123 2223 143 HOH HOH . 
F 4 HOH A 124 2224 168 HOH HOH . 
F 4 HOH A 125 2225 98 HOH HOH . 
F 4 HOH A 126 2226 83 HOH HOH . 
F 4 HOH A 127 2227 124 HOH HOH . 
F 4 HOH A 128 2228 49 HOH HOH . 
F 4 HOH A 129 2229 69 HOH HOH . 
F 4 HOH A 130 2230 99 HOH HOH . 
F 4 HOH A 131 2231 201 HOH HOH . 
F 4 HOH A 132 2232 132 HOH HOH . 
F 4 HOH A 133 2233 187 HOH HOH . 
F 4 HOH A 134 2234 157 HOH HOH . 
F 4 HOH A 135 2235 108 HOH HOH . 
F 4 HOH A 136 2236 153 HOH HOH . 
F 4 HOH A 137 2237 162 HOH HOH . 
F 4 HOH A 138 2238 188 HOH HOH . 
F 4 HOH A 139 2239 176 HOH HOH . 
F 4 HOH A 140 2240 185 HOH HOH . 
F 4 HOH A 141 2241 141 HOH HOH . 
F 4 HOH A 142 2242 127 HOH HOH . 
F 4 HOH A 143 2243 161 HOH HOH . 
F 4 HOH A 144 2244 194 HOH HOH . 
F 4 HOH A 145 2245 160 HOH HOH . 
F 4 HOH A 146 2246 97 HOH HOH . 
F 4 HOH A 147 2247 121 HOH HOH . 
F 4 HOH A 148 2248 130 HOH HOH . 
F 4 HOH A 149 2249 96 HOH HOH . 
F 4 HOH A 150 2250 119 HOH HOH . 
F 4 HOH A 151 2251 31 HOH HOH . 
F 4 HOH A 152 2252 112 HOH HOH . 
F 4 HOH A 153 2253 151 HOH HOH . 
F 4 HOH A 154 2254 184 HOH HOH . 
F 4 HOH A 155 2255 71 HOH HOH . 
F 4 HOH A 156 2256 198 HOH HOH . 
F 4 HOH A 157 2257 60 HOH HOH . 
F 4 HOH A 158 2258 192 HOH HOH . 
F 4 HOH A 159 2259 102 HOH HOH . 
F 4 HOH A 160 2260 199 HOH HOH . 
F 4 HOH A 161 2261 115 HOH HOH . 
F 4 HOH A 162 2262 134 HOH HOH . 
F 4 HOH A 163 2263 58 HOH HOH . 
F 4 HOH A 164 2264 177 HOH HOH . 
F 4 HOH A 165 2265 195 HOH HOH . 
F 4 HOH A 166 2266 183 HOH HOH . 
F 4 HOH A 167 2267 94 HOH HOH . 
F 4 HOH A 168 2268 123 HOH HOH . 
F 4 HOH A 169 2269 135 HOH HOH . 
F 4 HOH A 170 2270 86 HOH HOH . 
F 4 HOH A 171 2271 150 HOH HOH . 
F 4 HOH A 172 2272 110 HOH HOH . 
F 4 HOH A 173 2273 104 HOH HOH . 
F 4 HOH A 174 2274 42 HOH HOH . 
F 4 HOH A 175 2275 197 HOH HOH . 
F 4 HOH A 176 2276 79 HOH HOH . 
F 4 HOH A 177 2277 128 HOH HOH . 
F 4 HOH A 178 2278 202 HOH HOH . 
F 4 HOH A 179 2279 89 HOH HOH . 
F 4 HOH A 180 2280 55 HOH HOH . 
F 4 HOH A 181 2281 136 HOH HOH . 
F 4 HOH A 182 2282 78 HOH HOH . 
F 4 HOH A 183 2283 109 HOH HOH . 
F 4 HOH A 184 2284 118 HOH HOH . 
F 4 HOH A 185 2285 87 HOH HOH . 
F 4 HOH A 186 2286 155 HOH HOH . 
F 4 HOH A 187 2287 159 HOH HOH . 
F 4 HOH A 188 2288 111 HOH HOH . 
F 4 HOH A 189 2289 165 HOH HOH . 
F 4 HOH A 190 2290 180 HOH HOH . 
F 4 HOH A 191 2291 204 HOH HOH . 
F 4 HOH A 192 2292 131 HOH HOH . 
F 4 HOH A 193 2293 122 HOH HOH . 
F 4 HOH A 194 2294 67 HOH HOH . 
F 4 HOH A 195 2295 140 HOH HOH . 
F 4 HOH A 196 2296 142 HOH HOH . 
F 4 HOH A 197 2297 186 HOH HOH . 
F 4 HOH A 198 2298 179 HOH HOH . 
F 4 HOH A 199 2299 175 HOH HOH . 
F 4 HOH A 200 2300 203 HOH HOH . 
F 4 HOH A 201 2301 133 HOH HOH . 
F 4 HOH A 202 2302 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 2 13.173 23.129 38.358 1 33.62 ? C1 EDO 2003 A 1 
HETATM 2 O O1 EDO . . . D 2 11.953 22.746 37.711 1 36.71 ? O1 EDO 2003 A 1 
HETATM 3 C C2 EDO . . . D 2 13.916 21.914 38.913 1 48.41 ? C2 EDO 2003 A 1 
HETATM 4 O O2 EDO . . . D 2 14.18 20.942 37.887 1 47.43 ? O2 EDO 2003 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           824 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#