data_5PBA # _model_server_result.job_id 0XnQpE79vRXeS9kJlu_0eQ _model_server_result.datetime_utc '2024-11-25 19:03:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5pba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2003}' # _entry.id 5PBA # _exptl.entry_id 5PBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 139.109 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-hydroxypyridine-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5PBA _cell.length_a 80.511 _cell.length_b 97.03 _cell.length_c 58.203 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H5 N O3' _chem_comp.formula_weight 139.109 _chem_comp.id 53B _chem_comp.mon_nstd_flag . _chem_comp.name '6-hydroxypyridine-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C09 53B doub 1 n y C01 C02 53B sing 2 n y C09 C08 53B sing 3 n y C02 C03 53B doub 4 n y C08 O10 53B sing 5 n n C08 N07 53B doub 6 n y C03 N07 53B sing 7 n y C03 C04 53B sing 8 n n C04 O05 53B doub 9 n n C04 O06 53B sing 10 n n C01 H011 53B sing 11 n n C02 H021 53B sing 12 n n O06 H1 53B sing 13 n n C09 H091 53B sing 14 n n O10 H101 53B sing 15 n n # _atom_sites.entry_id 5PBA _atom_sites.fract_transf_matrix[1][1] 0.012421 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 2001 1 EDO EDO . C 3 MES A 1 2002 1 MES MES . D 4 53B A 1 2003 1 53B LIG . E 5 HOH A 1 2101 66 HOH HOH . E 5 HOH A 2 2102 116 HOH HOH . E 5 HOH A 3 2103 167 HOH HOH . E 5 HOH A 4 2104 205 HOH HOH . E 5 HOH A 5 2105 92 HOH HOH . E 5 HOH A 6 2106 196 HOH HOH . E 5 HOH A 7 2107 63 HOH HOH . E 5 HOH A 8 2108 68 HOH HOH . E 5 HOH A 9 2109 6 HOH HOH . E 5 HOH A 10 2110 12 HOH HOH . E 5 HOH A 11 2111 36 HOH HOH . E 5 HOH A 12 2112 40 HOH HOH . E 5 HOH A 13 2113 100 HOH HOH . E 5 HOH A 14 2114 191 HOH HOH . E 5 HOH A 15 2115 28 HOH HOH . E 5 HOH A 16 2116 37 HOH HOH . E 5 HOH A 17 2117 84 HOH HOH . E 5 HOH A 18 2118 163 HOH HOH . E 5 HOH A 19 2119 32 HOH HOH . E 5 HOH A 20 2120 72 HOH HOH . E 5 HOH A 21 2121 7 HOH HOH . E 5 HOH A 22 2122 2 HOH HOH . E 5 HOH A 23 2123 50 HOH HOH . E 5 HOH A 24 2124 48 HOH HOH . E 5 HOH A 25 2125 91 HOH HOH . E 5 HOH A 26 2126 114 HOH HOH . E 5 HOH A 27 2127 23 HOH HOH . E 5 HOH A 28 2128 45 HOH HOH . E 5 HOH A 29 2129 73 HOH HOH . E 5 HOH A 30 2130 39 HOH HOH . E 5 HOH A 31 2131 9 HOH HOH . E 5 HOH A 32 2132 24 HOH HOH . E 5 HOH A 33 2133 26 HOH HOH . E 5 HOH A 34 2134 62 HOH HOH . E 5 HOH A 35 2135 126 HOH HOH . E 5 HOH A 36 2136 75 HOH HOH . E 5 HOH A 37 2137 44 HOH HOH . E 5 HOH A 38 2138 113 HOH HOH . E 5 HOH A 39 2139 21 HOH HOH . E 5 HOH A 40 2140 38 HOH HOH . E 5 HOH A 41 2141 20 HOH HOH . E 5 HOH A 42 2142 137 HOH HOH . E 5 HOH A 43 2143 146 HOH HOH . E 5 HOH A 44 2144 30 HOH HOH . E 5 HOH A 45 2145 168 HOH HOH . E 5 HOH A 46 2146 16 HOH HOH . E 5 HOH A 47 2147 34 HOH HOH . E 5 HOH A 48 2148 158 HOH HOH . E 5 HOH A 49 2149 61 HOH HOH . E 5 HOH A 50 2150 10 HOH HOH . E 5 HOH A 51 2151 85 HOH HOH . E 5 HOH A 52 2152 64 HOH HOH . E 5 HOH A 53 2153 27 HOH HOH . E 5 HOH A 54 2154 120 HOH HOH . E 5 HOH A 55 2155 166 HOH HOH . E 5 HOH A 56 2156 1 HOH HOH . E 5 HOH A 57 2157 74 HOH HOH . E 5 HOH A 58 2158 70 HOH HOH . E 5 HOH A 59 2159 5 HOH HOH . E 5 HOH A 60 2160 47 HOH HOH . E 5 HOH A 61 2161 13 HOH HOH . E 5 HOH A 62 2162 81 HOH HOH . E 5 HOH A 63 2163 139 HOH HOH . E 5 HOH A 64 2164 53 HOH HOH . E 5 HOH A 65 2165 25 HOH HOH . E 5 HOH A 66 2166 76 HOH HOH . E 5 HOH A 67 2167 105 HOH HOH . E 5 HOH A 68 2168 17 HOH HOH . E 5 HOH A 69 2169 148 HOH HOH . E 5 HOH A 70 2170 154 HOH HOH . E 5 HOH A 71 2171 90 HOH HOH . E 5 HOH A 72 2172 149 HOH HOH . E 5 HOH A 73 2173 35 HOH HOH . E 5 HOH A 74 2174 19 HOH HOH . E 5 HOH A 75 2175 15 HOH HOH . E 5 HOH A 76 2176 56 HOH HOH . E 5 HOH A 77 2177 54 HOH HOH . E 5 HOH A 78 2178 52 HOH HOH . E 5 HOH A 79 2179 172 HOH HOH . E 5 HOH A 80 2180 14 HOH HOH . E 5 HOH A 81 2181 169 HOH HOH . E 5 HOH A 82 2182 182 HOH HOH . E 5 HOH A 83 2183 4 HOH HOH . E 5 HOH A 84 2184 46 HOH HOH . E 5 HOH A 85 2185 29 HOH HOH . E 5 HOH A 86 2186 65 HOH HOH . E 5 HOH A 87 2187 208 HOH HOH . E 5 HOH A 88 2188 193 HOH HOH . E 5 HOH A 89 2189 161 HOH HOH . E 5 HOH A 90 2190 80 HOH HOH . E 5 HOH A 91 2191 51 HOH HOH . E 5 HOH A 92 2192 173 HOH HOH . E 5 HOH A 93 2193 77 HOH HOH . E 5 HOH A 94 2194 209 HOH HOH . E 5 HOH A 95 2195 174 HOH HOH . E 5 HOH A 96 2196 41 HOH HOH . E 5 HOH A 97 2197 93 HOH HOH . E 5 HOH A 98 2198 189 HOH HOH . E 5 HOH A 99 2199 8 HOH HOH . E 5 HOH A 100 2200 57 HOH HOH . E 5 HOH A 101 2201 145 HOH HOH . E 5 HOH A 102 2202 117 HOH HOH . E 5 HOH A 103 2203 33 HOH HOH . E 5 HOH A 104 2204 106 HOH HOH . E 5 HOH A 105 2205 152 HOH HOH . E 5 HOH A 106 2206 18 HOH HOH . E 5 HOH A 107 2207 122 HOH HOH . E 5 HOH A 108 2208 170 HOH HOH . E 5 HOH A 109 2209 59 HOH HOH . E 5 HOH A 110 2210 181 HOH HOH . E 5 HOH A 111 2211 3 HOH HOH . E 5 HOH A 112 2212 107 HOH HOH . E 5 HOH A 113 2213 11 HOH HOH . E 5 HOH A 114 2214 98 HOH HOH . E 5 HOH A 115 2215 82 HOH HOH . E 5 HOH A 116 2216 156 HOH HOH . E 5 HOH A 117 2217 95 HOH HOH . E 5 HOH A 118 2218 171 HOH HOH . E 5 HOH A 119 2219 83 HOH HOH . E 5 HOH A 120 2220 164 HOH HOH . E 5 HOH A 121 2221 147 HOH HOH . E 5 HOH A 122 2222 22 HOH HOH . E 5 HOH A 123 2223 190 HOH HOH . E 5 HOH A 124 2224 138 HOH HOH . E 5 HOH A 125 2225 88 HOH HOH . E 5 HOH A 126 2226 124 HOH HOH . E 5 HOH A 127 2227 101 HOH HOH . E 5 HOH A 128 2228 187 HOH HOH . E 5 HOH A 129 2229 144 HOH HOH . E 5 HOH A 130 2230 103 HOH HOH . E 5 HOH A 131 2231 129 HOH HOH . E 5 HOH A 132 2232 69 HOH HOH . E 5 HOH A 133 2233 153 HOH HOH . E 5 HOH A 134 2234 99 HOH HOH . E 5 HOH A 135 2235 185 HOH HOH . E 5 HOH A 136 2236 143 HOH HOH . E 5 HOH A 137 2237 157 HOH HOH . E 5 HOH A 138 2238 202 HOH HOH . E 5 HOH A 139 2239 207 HOH HOH . E 5 HOH A 140 2240 135 HOH HOH . E 5 HOH A 141 2241 188 HOH HOH . E 5 HOH A 142 2242 162 HOH HOH . E 5 HOH A 143 2243 102 HOH HOH . E 5 HOH A 144 2244 141 HOH HOH . E 5 HOH A 145 2245 184 HOH HOH . E 5 HOH A 146 2246 49 HOH HOH . E 5 HOH A 147 2247 130 HOH HOH . E 5 HOH A 148 2248 112 HOH HOH . E 5 HOH A 149 2249 43 HOH HOH . E 5 HOH A 150 2250 96 HOH HOH . E 5 HOH A 151 2251 31 HOH HOH . E 5 HOH A 152 2252 60 HOH HOH . E 5 HOH A 153 2253 194 HOH HOH . E 5 HOH A 154 2254 132 HOH HOH . E 5 HOH A 155 2255 97 HOH HOH . E 5 HOH A 156 2256 78 HOH HOH . E 5 HOH A 157 2257 108 HOH HOH . E 5 HOH A 158 2258 176 HOH HOH . E 5 HOH A 159 2259 199 HOH HOH . E 5 HOH A 160 2260 198 HOH HOH . E 5 HOH A 161 2261 178 HOH HOH . E 5 HOH A 162 2262 155 HOH HOH . E 5 HOH A 163 2263 177 HOH HOH . E 5 HOH A 164 2264 150 HOH HOH . E 5 HOH A 165 2265 123 HOH HOH . E 5 HOH A 166 2266 119 HOH HOH . E 5 HOH A 167 2267 71 HOH HOH . E 5 HOH A 168 2268 195 HOH HOH . E 5 HOH A 169 2269 58 HOH HOH . E 5 HOH A 170 2270 183 HOH HOH . E 5 HOH A 171 2271 192 HOH HOH . E 5 HOH A 172 2272 136 HOH HOH . E 5 HOH A 173 2273 110 HOH HOH . E 5 HOH A 174 2274 94 HOH HOH . E 5 HOH A 175 2275 104 HOH HOH . E 5 HOH A 176 2276 86 HOH HOH . E 5 HOH A 177 2277 151 HOH HOH . E 5 HOH A 178 2278 142 HOH HOH . E 5 HOH A 179 2279 128 HOH HOH . E 5 HOH A 180 2280 79 HOH HOH . E 5 HOH A 181 2281 89 HOH HOH . E 5 HOH A 182 2282 134 HOH HOH . E 5 HOH A 183 2283 42 HOH HOH . E 5 HOH A 184 2284 55 HOH HOH . E 5 HOH A 185 2285 201 HOH HOH . E 5 HOH A 186 2286 87 HOH HOH . E 5 HOH A 187 2287 206 HOH HOH . E 5 HOH A 188 2288 186 HOH HOH . E 5 HOH A 189 2289 111 HOH HOH . E 5 HOH A 190 2290 160 HOH HOH . E 5 HOH A 191 2291 165 HOH HOH . E 5 HOH A 192 2292 109 HOH HOH . E 5 HOH A 193 2293 180 HOH HOH . E 5 HOH A 194 2294 118 HOH HOH . E 5 HOH A 195 2295 159 HOH HOH . E 5 HOH A 196 2296 121 HOH HOH . E 5 HOH A 197 2297 115 HOH HOH . E 5 HOH A 198 2298 67 HOH HOH . E 5 HOH A 199 2299 204 HOH HOH . E 5 HOH A 200 2300 140 HOH HOH . E 5 HOH A 201 2301 131 HOH HOH . E 5 HOH A 202 2302 127 HOH HOH . E 5 HOH A 203 2303 179 HOH HOH . E 5 HOH A 204 2304 197 HOH HOH . E 5 HOH A 205 2305 175 HOH HOH . E 5 HOH A 206 2306 203 HOH HOH . E 5 HOH A 207 2307 125 HOH HOH . E 5 HOH A 208 2308 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 53B . D . D 4 13.405 41.906 29.148 0.76 37.16 ? C01 53B 2003 A 1 HETATM 2 C C02 53B . D . D 4 12.769 42.506 30.217 0.76 40.09 ? C02 53B 2003 A 1 HETATM 3 C C03 53B . D . D 4 13.378 42.497 31.46 0.76 39.46 ? C03 53B 2003 A 1 HETATM 4 C C04 53B . D . D 4 12.661 43.15 32.611 0.76 41.43 ? C04 53B 2003 A 1 HETATM 5 O O05 53B . D . D 4 13.236 43.314 33.668 0.76 36.64 ? O05 53B 2003 A 1 HETATM 6 O O06 53B . D . D 4 11.416 43.493 32.429 0.76 45.06 ? O06 53B 2003 A 1 HETATM 7 N N07 53B . D . D 4 14.573 41.914 31.647 0.76 36.6 ? N07 53B 2003 A 1 HETATM 8 C C08 53B . D . D 4 15.183 41.327 30.628 0.76 37.78 ? C08 53B 2003 A 1 HETATM 9 C C09 53B . D . D 4 14.611 41.313 29.355 0.76 35.31 ? C09 53B 2003 A 1 HETATM 10 O O10 53B . D . D 4 16.383 40.725 30.834 0.76 33.64 ? O10 53B 2003 A 1 HETATM 11 H H011 53B . D . D 4 13.014 41.904 28.303 0.76 44.59 ? H011 53B 2003 A 1 HETATM 12 H H021 53B . D . D 4 11.931 42.926 30.1 0.76 48.11 ? H021 53B 2003 A 1 HETATM 13 H H1 53B . D . D 4 10.974 43.859 33.068 0.76 54.07 ? H1 53B 2003 A 1 HETATM 14 H H091 53B . D . D 4 15.062 40.895 28.638 0.76 42.38 ? H091 53B 2003 A 1 HETATM 15 H H101 53B . D . D 4 16.727 40.73 31.595 0.76 40.37 ? H101 53B 2003 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 39 _model_server_stats.element_count 15 #