data_5PBD # _model_server_result.job_id iWT1b0tgXD9M22g5Xul-pQ _model_server_result.datetime_utc '2024-11-15 12:36:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5pbd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2003}' # _entry.id 5PBD # _exptl.entry_id 5PBD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 179.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PARA ACETAMIDO BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5PBD _cell.length_a 82.577 _cell.length_b 96.721 _cell.length_c 58.029 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H9 N O3' _chem_comp.formula_weight 179.173 _chem_comp.id TYZ _chem_comp.mon_nstd_flag . _chem_comp.name 'PARA ACETAMIDO BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C7 TYZ doub 367 n n O2 C7 TYZ sing 368 n n O2 H1 TYZ sing 369 n n C7 C3 TYZ sing 370 n n C3 C4 TYZ sing 371 n y C3 C2 TYZ doub 372 n y C4 C5 TYZ doub 373 n y C4 H4 TYZ sing 374 n n C5 C6 TYZ sing 375 n y C5 H5 TYZ sing 376 n n C6 C1 TYZ doub 377 n y C6 N TYZ sing 378 n n C1 C2 TYZ sing 379 n y C1 HA TYZ sing 380 n n C2 H2 TYZ sing 381 n n C8 N TYZ sing 382 n n C8 O4 TYZ doub 383 n n C8 C9 TYZ sing 384 n n N HN TYZ sing 385 n n C9 H9C1 TYZ sing 386 n n C9 H9C2 TYZ sing 387 n n C9 H9C3 TYZ sing 388 n n # _atom_sites.entry_id 5PBD _atom_sites.fract_transf_matrix[1][1] 0.01211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 2001 1 EDO EDO . C 2 EDO A 1 2002 2 EDO EDO . D 3 TYZ A 1 2003 1 TYZ LIG . E 4 HOH A 1 2101 167 HOH HOH . E 4 HOH A 2 2102 196 HOH HOH . E 4 HOH A 3 2103 61 HOH HOH . E 4 HOH A 4 2104 74 HOH HOH . E 4 HOH A 5 2105 38 HOH HOH . E 4 HOH A 6 2106 50 HOH HOH . E 4 HOH A 7 2107 114 HOH HOH . E 4 HOH A 8 2108 205 HOH HOH . E 4 HOH A 9 2109 107 HOH HOH . E 4 HOH A 10 2110 28 HOH HOH . E 4 HOH A 11 2111 148 HOH HOH . E 4 HOH A 12 2112 126 HOH HOH . E 4 HOH A 13 2113 47 HOH HOH . E 4 HOH A 14 2114 36 HOH HOH . E 4 HOH A 15 2115 21 HOH HOH . E 4 HOH A 16 2116 163 HOH HOH . E 4 HOH A 17 2117 68 HOH HOH . E 4 HOH A 18 2118 40 HOH HOH . E 4 HOH A 19 2119 152 HOH HOH . E 4 HOH A 20 2120 48 HOH HOH . E 4 HOH A 21 2121 116 HOH HOH . E 4 HOH A 22 2122 14 HOH HOH . E 4 HOH A 23 2123 24 HOH HOH . E 4 HOH A 24 2124 92 HOH HOH . E 4 HOH A 25 2125 44 HOH HOH . E 4 HOH A 26 2126 100 HOH HOH . E 4 HOH A 27 2127 34 HOH HOH . E 4 HOH A 28 2128 7 HOH HOH . E 4 HOH A 29 2129 5 HOH HOH . E 4 HOH A 30 2130 20 HOH HOH . E 4 HOH A 31 2131 37 HOH HOH . E 4 HOH A 32 2132 64 HOH HOH . E 4 HOH A 33 2133 19 HOH HOH . E 4 HOH A 34 2134 146 HOH HOH . E 4 HOH A 35 2135 174 HOH HOH . E 4 HOH A 36 2136 32 HOH HOH . E 4 HOH A 37 2137 9 HOH HOH . E 4 HOH A 38 2138 52 HOH HOH . E 4 HOH A 39 2139 6 HOH HOH . E 4 HOH A 40 2140 70 HOH HOH . E 4 HOH A 41 2141 39 HOH HOH . E 4 HOH A 42 2142 169 HOH HOH . E 4 HOH A 43 2143 10 HOH HOH . E 4 HOH A 44 2144 154 HOH HOH . E 4 HOH A 45 2145 30 HOH HOH . E 4 HOH A 46 2146 16 HOH HOH . E 4 HOH A 47 2147 26 HOH HOH . E 4 HOH A 48 2148 23 HOH HOH . E 4 HOH A 49 2149 191 HOH HOH . E 4 HOH A 50 2150 62 HOH HOH . E 4 HOH A 51 2151 91 HOH HOH . E 4 HOH A 52 2152 168 HOH HOH . E 4 HOH A 53 2153 17 HOH HOH . E 4 HOH A 54 2154 46 HOH HOH . E 4 HOH A 55 2155 72 HOH HOH . E 4 HOH A 56 2156 76 HOH HOH . E 4 HOH A 57 2157 25 HOH HOH . E 4 HOH A 58 2158 190 HOH HOH . E 4 HOH A 59 2159 113 HOH HOH . E 4 HOH A 60 2160 137 HOH HOH . E 4 HOH A 61 2161 2 HOH HOH . E 4 HOH A 62 2162 149 HOH HOH . E 4 HOH A 63 2163 27 HOH HOH . E 4 HOH A 64 2164 63 HOH HOH . E 4 HOH A 65 2165 4 HOH HOH . E 4 HOH A 66 2166 182 HOH HOH . E 4 HOH A 67 2167 207 HOH HOH . E 4 HOH A 68 2168 15 HOH HOH . E 4 HOH A 69 2169 166 HOH HOH . E 4 HOH A 70 2170 77 HOH HOH . E 4 HOH A 71 2171 35 HOH HOH . E 4 HOH A 72 2172 45 HOH HOH . E 4 HOH A 73 2173 81 HOH HOH . E 4 HOH A 74 2174 54 HOH HOH . E 4 HOH A 75 2175 75 HOH HOH . E 4 HOH A 76 2176 80 HOH HOH . E 4 HOH A 77 2177 194 HOH HOH . E 4 HOH A 78 2178 90 HOH HOH . E 4 HOH A 79 2179 206 HOH HOH . E 4 HOH A 80 2180 51 HOH HOH . E 4 HOH A 81 2181 84 HOH HOH . E 4 HOH A 82 2182 93 HOH HOH . E 4 HOH A 83 2183 106 HOH HOH . E 4 HOH A 84 2184 101 HOH HOH . E 4 HOH A 85 2185 53 HOH HOH . E 4 HOH A 86 2186 59 HOH HOH . E 4 HOH A 87 2187 1 HOH HOH . E 4 HOH A 88 2188 73 HOH HOH . E 4 HOH A 89 2189 144 HOH HOH . E 4 HOH A 90 2190 57 HOH HOH . E 4 HOH A 91 2191 189 HOH HOH . E 4 HOH A 92 2192 56 HOH HOH . E 4 HOH A 93 2193 171 HOH HOH . E 4 HOH A 94 2194 12 HOH HOH . E 4 HOH A 95 2195 29 HOH HOH . E 4 HOH A 96 2196 105 HOH HOH . E 4 HOH A 97 2197 66 HOH HOH . E 4 HOH A 98 2198 158 HOH HOH . E 4 HOH A 99 2199 173 HOH HOH . E 4 HOH A 100 2200 18 HOH HOH . E 4 HOH A 101 2201 41 HOH HOH . E 4 HOH A 102 2202 193 HOH HOH . E 4 HOH A 103 2203 8 HOH HOH . E 4 HOH A 104 2204 145 HOH HOH . E 4 HOH A 105 2205 164 HOH HOH . E 4 HOH A 106 2206 3 HOH HOH . E 4 HOH A 107 2207 139 HOH HOH . E 4 HOH A 108 2208 172 HOH HOH . E 4 HOH A 109 2209 65 HOH HOH . E 4 HOH A 110 2210 117 HOH HOH . E 4 HOH A 111 2211 22 HOH HOH . E 4 HOH A 112 2212 33 HOH HOH . E 4 HOH A 113 2213 156 HOH HOH . E 4 HOH A 114 2214 82 HOH HOH . E 4 HOH A 115 2215 13 HOH HOH . E 4 HOH A 116 2216 170 HOH HOH . E 4 HOH A 117 2217 120 HOH HOH . E 4 HOH A 118 2218 147 HOH HOH . E 4 HOH A 119 2219 103 HOH HOH . E 4 HOH A 120 2220 11 HOH HOH . E 4 HOH A 121 2221 88 HOH HOH . E 4 HOH A 122 2222 83 HOH HOH . E 4 HOH A 123 2223 95 HOH HOH . E 4 HOH A 124 2224 188 HOH HOH . E 4 HOH A 125 2225 69 HOH HOH . E 4 HOH A 126 2226 138 HOH HOH . E 4 HOH A 127 2227 98 HOH HOH . E 4 HOH A 128 2228 153 HOH HOH . E 4 HOH A 129 2229 143 HOH HOH . E 4 HOH A 130 2230 99 HOH HOH . E 4 HOH A 131 2231 181 HOH HOH . E 4 HOH A 132 2232 178 HOH HOH . E 4 HOH A 133 2233 157 HOH HOH . E 4 HOH A 134 2234 124 HOH HOH . E 4 HOH A 135 2235 108 HOH HOH . E 4 HOH A 136 2236 201 HOH HOH . E 4 HOH A 137 2237 132 HOH HOH . E 4 HOH A 138 2238 85 HOH HOH . E 4 HOH A 139 2239 162 HOH HOH . E 4 HOH A 140 2240 141 HOH HOH . E 4 HOH A 141 2241 60 HOH HOH . E 4 HOH A 142 2242 185 HOH HOH . E 4 HOH A 143 2243 130 HOH HOH . E 4 HOH A 144 2244 112 HOH HOH . E 4 HOH A 145 2245 135 HOH HOH . E 4 HOH A 146 2246 129 HOH HOH . E 4 HOH A 147 2247 49 HOH HOH . E 4 HOH A 148 2248 97 HOH HOH . E 4 HOH A 149 2249 161 HOH HOH . E 4 HOH A 150 2250 71 HOH HOH . E 4 HOH A 151 2251 176 HOH HOH . E 4 HOH A 152 2252 31 HOH HOH . E 4 HOH A 153 2253 96 HOH HOH . E 4 HOH A 154 2254 119 HOH HOH . E 4 HOH A 155 2255 43 HOH HOH . E 4 HOH A 156 2256 102 HOH HOH . E 4 HOH A 157 2257 183 HOH HOH . E 4 HOH A 158 2258 202 HOH HOH . E 4 HOH A 159 2259 192 HOH HOH . E 4 HOH A 160 2260 187 HOH HOH . E 4 HOH A 161 2261 127 HOH HOH . E 4 HOH A 162 2262 151 HOH HOH . E 4 HOH A 163 2263 110 HOH HOH . E 4 HOH A 164 2264 150 HOH HOH . E 4 HOH A 165 2265 94 HOH HOH . E 4 HOH A 166 2266 58 HOH HOH . E 4 HOH A 167 2267 123 HOH HOH . E 4 HOH A 168 2268 134 HOH HOH . E 4 HOH A 169 2269 104 HOH HOH . E 4 HOH A 170 2270 86 HOH HOH . E 4 HOH A 171 2271 79 HOH HOH . E 4 HOH A 172 2272 155 HOH HOH . E 4 HOH A 173 2273 42 HOH HOH . E 4 HOH A 174 2274 136 HOH HOH . E 4 HOH A 175 2275 199 HOH HOH . E 4 HOH A 176 2276 89 HOH HOH . E 4 HOH A 177 2277 198 HOH HOH . E 4 HOH A 178 2278 122 HOH HOH . E 4 HOH A 179 2279 78 HOH HOH . E 4 HOH A 180 2280 87 HOH HOH . E 4 HOH A 181 2281 195 HOH HOH . E 4 HOH A 182 2282 128 HOH HOH . E 4 HOH A 183 2283 118 HOH HOH . E 4 HOH A 184 2284 111 HOH HOH . E 4 HOH A 185 2285 55 HOH HOH . E 4 HOH A 186 2286 142 HOH HOH . E 4 HOH A 187 2287 197 HOH HOH . E 4 HOH A 188 2288 109 HOH HOH . E 4 HOH A 189 2289 186 HOH HOH . E 4 HOH A 190 2290 159 HOH HOH . E 4 HOH A 191 2291 177 HOH HOH . E 4 HOH A 192 2292 121 HOH HOH . E 4 HOH A 193 2293 165 HOH HOH . E 4 HOH A 194 2294 180 HOH HOH . E 4 HOH A 195 2295 160 HOH HOH . E 4 HOH A 196 2296 179 HOH HOH . E 4 HOH A 197 2297 67 HOH HOH . E 4 HOH A 198 2298 204 HOH HOH . E 4 HOH A 199 2299 184 HOH HOH . E 4 HOH A 200 2300 140 HOH HOH . E 4 HOH A 201 2301 131 HOH HOH . E 4 HOH A 202 2302 175 HOH HOH . E 4 HOH A 203 2303 203 HOH HOH . E 4 HOH A 204 2304 125 HOH HOH . E 4 HOH A 205 2305 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TYZ . D . D 3 9.774 43.812 30.859 0.55 43.02 ? O1 TYZ 2003 A 1 HETATM 2 O O2 TYZ . D . D 3 11.205 44.133 32.5 0.55 51.68 ? O2 TYZ 2003 A 1 HETATM 3 C C7 TYZ . D . D 3 10.88 43.516 31.497 0.55 50.79 ? C7 TYZ 2003 A 1 HETATM 4 C C3 TYZ . D . D 3 11.741 42.41 31.004 0.55 43.19 ? C3 TYZ 2003 A 1 HETATM 5 C C4 TYZ . D . D 3 11.311 41.645 29.927 0.55 43.46 ? C4 TYZ 2003 A 1 HETATM 6 C C5 TYZ . D . D 3 12.095 40.611 29.462 0.55 40.57 ? C5 TYZ 2003 A 1 HETATM 7 C C6 TYZ . D . D 3 13.319 40.334 30.056 0.55 38.32 ? C6 TYZ 2003 A 1 HETATM 8 C C1 TYZ . D . D 3 13.741 41.108 31.136 0.55 36.93 ? C1 TYZ 2003 A 1 HETATM 9 C C2 TYZ . D . D 3 12.958 42.138 31.612 0.55 43.11 ? C2 TYZ 2003 A 1 HETATM 10 C C8 TYZ . D . D 3 15.303 38.84 29.913 0.55 34.29 ? C8 TYZ 2003 A 1 HETATM 11 N N TYZ . D . D 3 14.067 39.249 29.535 0.55 35.81 ? N TYZ 2003 A 1 HETATM 12 O O4 TYZ . D . D 3 16.041 39.521 30.613 0.55 28.85 ? O4 TYZ 2003 A 1 HETATM 13 C C9 TYZ . D . D 3 15.787 37.496 29.451 0.55 28.31 ? C9 TYZ 2003 A 1 # _model_server_stats.io_time_ms 95 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #