data_5PBF
#
_model_server_result.job_id            5TMa4DPKcs6UBtX28g_pkQ 
_model_server_result.datetime_utc      '2024-11-04 22:48:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5pbf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":2001}' 
#
_entry.id    5PBF 
#
_exptl.entry_id    5PBF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5PBF 
_cell.length_a            81.451 
_cell.length_b            96.521 
_cell.length_c            57.968 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5PBF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 105 n n 
C1 C2 EDO sing 106 n n 
C1 H11 EDO sing 107 n n 
C1 H12 EDO sing 108 n n 
O1 HO1 EDO sing 109 n n 
C2 O2 EDO sing 110 n n 
C2 H21 EDO sing 111 n n 
C2 H22 EDO sing 112 n n 
O2 HO2 EDO sing 113 n n 
#
_atom_sites.entry_id                     5PBF 
_atom_sites.fract_transf_matrix[1][1]    0.012277 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01036 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017251 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 2001 2 EDO EDO . 
C 2 EDO A 1 2002 3 EDO EDO . 
D 3 8HJ A 1 2003 1 8HJ LIG . 
E 4 HOH A 1 2101 92 HOH HOH . 
E 4 HOH A 2 2102 84 HOH HOH . 
E 4 HOH A 3 2103 36 HOH HOH . 
E 4 HOH A 4 2104 61 HOH HOH . 
E 4 HOH A 5 2105 116 HOH HOH . 
E 4 HOH A 6 2106 37 HOH HOH . 
E 4 HOH A 7 2107 40 HOH HOH . 
E 4 HOH A 8 2108 85 HOH HOH . 
E 4 HOH A 9 2109 44 HOH HOH . 
E 4 HOH A 10 2110 23 HOH HOH . 
E 4 HOH A 11 2111 146 HOH HOH . 
E 4 HOH A 12 2112 113 HOH HOH . 
E 4 HOH A 13 2113 48 HOH HOH . 
E 4 HOH A 14 2114 14 HOH HOH . 
E 4 HOH A 15 2115 38 HOH HOH . 
E 4 HOH A 16 2116 20 HOH HOH . 
E 4 HOH A 17 2117 47 HOH HOH . 
E 4 HOH A 18 2118 154 HOH HOH . 
E 4 HOH A 19 2119 21 HOH HOH . 
E 4 HOH A 20 2120 39 HOH HOH . 
E 4 HOH A 21 2121 163 HOH HOH . 
E 4 HOH A 22 2122 114 HOH HOH . 
E 4 HOH A 23 2123 70 HOH HOH . 
E 4 HOH A 24 2124 76 HOH HOH . 
E 4 HOH A 25 2125 7 HOH HOH . 
E 4 HOH A 26 2126 34 HOH HOH . 
E 4 HOH A 27 2127 2 HOH HOH . 
E 4 HOH A 28 2128 30 HOH HOH . 
E 4 HOH A 29 2129 46 HOH HOH . 
E 4 HOH A 30 2130 16 HOH HOH . 
E 4 HOH A 31 2131 196 HOH HOH . 
E 4 HOH A 32 2132 91 HOH HOH . 
E 4 HOH A 33 2133 26 HOH HOH . 
E 4 HOH A 34 2134 158 HOH HOH . 
E 4 HOH A 35 2135 126 HOH HOH . 
E 4 HOH A 36 2136 25 HOH HOH . 
E 4 HOH A 37 2137 166 HOH HOH . 
E 4 HOH A 38 2138 62 HOH HOH . 
E 4 HOH A 39 2139 100 HOH HOH . 
E 4 HOH A 40 2140 5 HOH HOH . 
E 4 HOH A 41 2141 72 HOH HOH . 
E 4 HOH A 42 2142 74 HOH HOH . 
E 4 HOH A 43 2143 68 HOH HOH . 
E 4 HOH A 44 2144 149 HOH HOH . 
E 4 HOH A 45 2145 6 HOH HOH . 
E 4 HOH A 46 2146 169 HOH HOH . 
E 4 HOH A 47 2147 156 HOH HOH . 
E 4 HOH A 48 2148 4 HOH HOH . 
E 4 HOH A 49 2149 75 HOH HOH . 
E 4 HOH A 50 2150 35 HOH HOH . 
E 4 HOH A 51 2151 28 HOH HOH . 
E 4 HOH A 52 2152 19 HOH HOH . 
E 4 HOH A 53 2153 27 HOH HOH . 
E 4 HOH A 54 2154 45 HOH HOH . 
E 4 HOH A 55 2155 206 HOH HOH . 
E 4 HOH A 56 2156 73 HOH HOH . 
E 4 HOH A 57 2157 57 HOH HOH . 
E 4 HOH A 58 2158 90 HOH HOH . 
E 4 HOH A 59 2159 52 HOH HOH . 
E 4 HOH A 60 2160 190 HOH HOH . 
E 4 HOH A 61 2161 81 HOH HOH . 
E 4 HOH A 62 2162 10 HOH HOH . 
E 4 HOH A 63 2163 205 HOH HOH . 
E 4 HOH A 64 2164 9 HOH HOH . 
E 4 HOH A 65 2165 32 HOH HOH . 
E 4 HOH A 66 2166 1 HOH HOH . 
E 4 HOH A 67 2167 17 HOH HOH . 
E 4 HOH A 68 2168 174 HOH HOH . 
E 4 HOH A 69 2169 148 HOH HOH . 
E 4 HOH A 70 2170 182 HOH HOH . 
E 4 HOH A 71 2171 64 HOH HOH . 
E 4 HOH A 72 2172 63 HOH HOH . 
E 4 HOH A 73 2173 145 HOH HOH . 
E 4 HOH A 74 2174 24 HOH HOH . 
E 4 HOH A 75 2175 53 HOH HOH . 
E 4 HOH A 76 2176 105 HOH HOH . 
E 4 HOH A 77 2177 168 HOH HOH . 
E 4 HOH A 78 2178 139 HOH HOH . 
E 4 HOH A 79 2179 12 HOH HOH . 
E 4 HOH A 80 2180 120 HOH HOH . 
E 4 HOH A 81 2181 137 HOH HOH . 
E 4 HOH A 82 2182 93 HOH HOH . 
E 4 HOH A 83 2183 80 HOH HOH . 
E 4 HOH A 84 2184 15 HOH HOH . 
E 4 HOH A 85 2185 107 HOH HOH . 
E 4 HOH A 86 2186 51 HOH HOH . 
E 4 HOH A 87 2187 189 HOH HOH . 
E 4 HOH A 88 2188 172 HOH HOH . 
E 4 HOH A 89 2189 50 HOH HOH . 
E 4 HOH A 90 2190 170 HOH HOH . 
E 4 HOH A 91 2191 54 HOH HOH . 
E 4 HOH A 92 2192 173 HOH HOH . 
E 4 HOH A 93 2193 193 HOH HOH . 
E 4 HOH A 94 2194 106 HOH HOH . 
E 4 HOH A 95 2195 88 HOH HOH . 
E 4 HOH A 96 2196 59 HOH HOH . 
E 4 HOH A 97 2197 77 HOH HOH . 
E 4 HOH A 98 2198 29 HOH HOH . 
E 4 HOH A 99 2199 164 HOH HOH . 
E 4 HOH A 100 2200 65 HOH HOH . 
E 4 HOH A 101 2201 8 HOH HOH . 
E 4 HOH A 102 2202 144 HOH HOH . 
E 4 HOH A 103 2203 33 HOH HOH . 
E 4 HOH A 104 2204 41 HOH HOH . 
E 4 HOH A 105 2205 18 HOH HOH . 
E 4 HOH A 106 2206 66 HOH HOH . 
E 4 HOH A 107 2207 181 HOH HOH . 
E 4 HOH A 108 2208 101 HOH HOH . 
E 4 HOH A 109 2209 22 HOH HOH . 
E 4 HOH A 110 2210 56 HOH HOH . 
E 4 HOH A 111 2211 3 HOH HOH . 
E 4 HOH A 112 2212 82 HOH HOH . 
E 4 HOH A 113 2213 13 HOH HOH . 
E 4 HOH A 114 2214 152 HOH HOH . 
E 4 HOH A 115 2215 191 HOH HOH . 
E 4 HOH A 116 2216 138 HOH HOH . 
E 4 HOH A 117 2217 208 HOH HOH . 
E 4 HOH A 118 2218 171 HOH HOH . 
E 4 HOH A 119 2219 98 HOH HOH . 
E 4 HOH A 120 2220 117 HOH HOH . 
E 4 HOH A 121 2221 83 HOH HOH . 
E 4 HOH A 122 2222 147 HOH HOH . 
E 4 HOH A 123 2223 103 HOH HOH . 
E 4 HOH A 124 2224 188 HOH HOH . 
E 4 HOH A 125 2225 69 HOH HOH . 
E 4 HOH A 126 2226 209 HOH HOH . 
E 4 HOH A 127 2227 95 HOH HOH . 
E 4 HOH A 128 2228 99 HOH HOH . 
E 4 HOH A 129 2229 124 HOH HOH . 
E 4 HOH A 130 2230 153 HOH HOH . 
E 4 HOH A 131 2231 201 HOH HOH . 
E 4 HOH A 132 2232 157 HOH HOH . 
E 4 HOH A 133 2233 178 HOH HOH . 
E 4 HOH A 134 2234 143 HOH HOH . 
E 4 HOH A 135 2235 132 HOH HOH . 
E 4 HOH A 136 2236 185 HOH HOH . 
E 4 HOH A 137 2237 141 HOH HOH . 
E 4 HOH A 138 2238 130 HOH HOH . 
E 4 HOH A 139 2239 49 HOH HOH . 
E 4 HOH A 140 2240 108 HOH HOH . 
E 4 HOH A 141 2241 207 HOH HOH . 
E 4 HOH A 142 2242 162 HOH HOH . 
E 4 HOH A 143 2243 122 HOH HOH . 
E 4 HOH A 144 2244 176 HOH HOH . 
E 4 HOH A 145 2245 192 HOH HOH . 
E 4 HOH A 146 2246 184 HOH HOH . 
E 4 HOH A 147 2247 97 HOH HOH . 
E 4 HOH A 148 2248 119 HOH HOH . 
E 4 HOH A 149 2249 161 HOH HOH . 
E 4 HOH A 150 2250 31 HOH HOH . 
E 4 HOH A 151 2251 96 HOH HOH . 
E 4 HOH A 152 2252 135 HOH HOH . 
E 4 HOH A 153 2253 112 HOH HOH . 
E 4 HOH A 154 2254 183 HOH HOH . 
E 4 HOH A 155 2255 102 HOH HOH . 
E 4 HOH A 156 2256 198 HOH HOH . 
E 4 HOH A 157 2257 60 HOH HOH . 
E 4 HOH A 158 2258 202 HOH HOH . 
E 4 HOH A 159 2259 199 HOH HOH . 
E 4 HOH A 160 2260 71 HOH HOH . 
E 4 HOH A 161 2261 58 HOH HOH . 
E 4 HOH A 162 2262 94 HOH HOH . 
E 4 HOH A 163 2263 195 HOH HOH . 
E 4 HOH A 164 2264 151 HOH HOH . 
E 4 HOH A 165 2265 110 HOH HOH . 
E 4 HOH A 166 2266 194 HOH HOH . 
E 4 HOH A 167 2267 86 HOH HOH . 
E 4 HOH A 168 2268 160 HOH HOH . 
E 4 HOH A 169 2269 128 HOH HOH . 
E 4 HOH A 170 2270 89 HOH HOH . 
E 4 HOH A 171 2271 123 HOH HOH . 
E 4 HOH A 172 2272 136 HOH HOH . 
E 4 HOH A 173 2273 210 HOH HOH . 
E 4 HOH A 174 2274 79 HOH HOH . 
E 4 HOH A 175 2275 78 HOH HOH . 
E 4 HOH A 176 2276 177 HOH HOH . 
E 4 HOH A 177 2277 155 HOH HOH . 
E 4 HOH A 178 2278 42 HOH HOH . 
E 4 HOH A 179 2279 187 HOH HOH . 
E 4 HOH A 180 2280 111 HOH HOH . 
E 4 HOH A 181 2281 134 HOH HOH . 
E 4 HOH A 182 2282 104 HOH HOH . 
E 4 HOH A 183 2283 150 HOH HOH . 
E 4 HOH A 184 2284 55 HOH HOH . 
E 4 HOH A 185 2285 179 HOH HOH . 
E 4 HOH A 186 2286 118 HOH HOH . 
E 4 HOH A 187 2287 87 HOH HOH . 
E 4 HOH A 188 2288 159 HOH HOH . 
E 4 HOH A 189 2289 115 HOH HOH . 
E 4 HOH A 190 2290 109 HOH HOH . 
E 4 HOH A 191 2291 186 HOH HOH . 
E 4 HOH A 192 2292 142 HOH HOH . 
E 4 HOH A 193 2293 165 HOH HOH . 
E 4 HOH A 194 2294 180 HOH HOH . 
E 4 HOH A 195 2295 67 HOH HOH . 
E 4 HOH A 196 2296 204 HOH HOH . 
E 4 HOH A 197 2297 140 HOH HOH . 
E 4 HOH A 198 2298 197 HOH HOH . 
E 4 HOH A 199 2299 131 HOH HOH . 
E 4 HOH A 200 2300 175 HOH HOH . 
E 4 HOH A 201 2301 203 HOH HOH . 
E 4 HOH A 202 2302 133 HOH HOH . 
E 4 HOH A 203 2303 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . B 2 21.897 15.022 31.135 0.8 38.82 ? C1 EDO 2001 A 1 
HETATM 2 O O1 EDO . . . B 2 22.325 15.822 32.249 0.8 40.93 ? O1 EDO 2001 A 1 
HETATM 3 C C2 EDO . . . B 2 23.121 14.575 30.343 0.8 38.3 ? C2 EDO 2001 A 1 
HETATM 4 O O2 EDO . . . B 2 24.164 14.199 31.253 0.8 43.96 ? O2 EDO 2001 A 1 
HETATM 5 H H11 EDO . . . B 2 21.232 15.604 30.494 0.8 46.58 ? H11 EDO 2001 A 1 
HETATM 6 H H12 EDO . . . B 2 21.348 14.149 31.495 0.8 46.58 ? H12 EDO 2001 A 1 
HETATM 7 H HO1 EDO . . . B 2 21.553 16.109 32.756 0.8 49.11 ? HO1 EDO 2001 A 1 
HETATM 8 H H21 EDO . . . B 2 22.861 13.726 29.707 0.8 45.96 ? H21 EDO 2001 A 1 
HETATM 9 H H22 EDO . . . B 2 23.465 15.39 29.702 0.8 45.96 ? H22 EDO 2001 A 1 
HETATM 10 H HO2 EDO . . . B 2 24.941 13.916 30.753 0.8 52.75 ? HO2 EDO 2001 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#