data_5PBR # _model_server_result.job_id w7sOCYqMt60wNCBiZiNMAA _model_server_result.datetime_utc '2024-11-22 13:53:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5pbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 5PBR # _exptl.entry_id 5PBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5PBR _cell.length_a 82.323 _cell.length_b 96.598 _cell.length_c 57.962 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5PBR _atom_sites.fract_transf_matrix[1][1] 0.012147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 2001 1 EDO EDO . C 3 HOH A 1 2101 116 HOH HOH . C 3 HOH A 2 2102 196 HOH HOH . C 3 HOH A 3 2103 84 HOH HOH . C 3 HOH A 4 2104 92 HOH HOH . C 3 HOH A 5 2105 100 HOH HOH . C 3 HOH A 6 2106 120 HOH HOH . C 3 HOH A 7 2107 21 HOH HOH . C 3 HOH A 8 2108 154 HOH HOH . C 3 HOH A 9 2109 68 HOH HOH . C 3 HOH A 10 2110 107 HOH HOH . C 3 HOH A 11 2111 51 HOH HOH . C 3 HOH A 12 2112 44 HOH HOH . C 3 HOH A 13 2113 40 HOH HOH . C 3 HOH A 14 2114 28 HOH HOH . C 3 HOH A 15 2115 36 HOH HOH . C 3 HOH A 16 2116 13 HOH HOH . C 3 HOH A 17 2117 52 HOH HOH . C 3 HOH A 18 2118 38 HOH HOH . C 3 HOH A 19 2119 72 HOH HOH . C 3 HOH A 20 2120 5 HOH HOH . C 3 HOH A 21 2121 34 HOH HOH . C 3 HOH A 22 2122 47 HOH HOH . C 3 HOH A 23 2123 9 HOH HOH . C 3 HOH A 24 2124 163 HOH HOH . C 3 HOH A 25 2125 2 HOH HOH . C 3 HOH A 26 2126 76 HOH HOH . C 3 HOH A 27 2127 74 HOH HOH . C 3 HOH A 28 2128 14 HOH HOH . C 3 HOH A 29 2129 39 HOH HOH . C 3 HOH A 30 2130 7 HOH HOH . C 3 HOH A 31 2131 158 HOH HOH . C 3 HOH A 32 2132 149 HOH HOH . C 3 HOH A 33 2133 37 HOH HOH . C 3 HOH A 34 2134 70 HOH HOH . C 3 HOH A 35 2135 114 HOH HOH . C 3 HOH A 36 2136 6 HOH HOH . C 3 HOH A 37 2137 10 HOH HOH . C 3 HOH A 38 2138 48 HOH HOH . C 3 HOH A 39 2139 129 HOH HOH . C 3 HOH A 40 2140 59 HOH HOH . C 3 HOH A 41 2141 152 HOH HOH . C 3 HOH A 42 2142 23 HOH HOH . C 3 HOH A 43 2143 20 HOH HOH . C 3 HOH A 44 2144 62 HOH HOH . C 3 HOH A 45 2145 26 HOH HOH . C 3 HOH A 46 2146 167 HOH HOH . C 3 HOH A 47 2147 75 HOH HOH . C 3 HOH A 48 2148 46 HOH HOH . C 3 HOH A 49 2149 25 HOH HOH . C 3 HOH A 50 2150 30 HOH HOH . C 3 HOH A 51 2151 16 HOH HOH . C 3 HOH A 52 2152 77 HOH HOH . C 3 HOH A 53 2153 169 HOH HOH . C 3 HOH A 54 2154 174 HOH HOH . C 3 HOH A 55 2155 190 HOH HOH . C 3 HOH A 56 2156 173 HOH HOH . C 3 HOH A 57 2157 61 HOH HOH . C 3 HOH A 58 2158 32 HOH HOH . C 3 HOH A 59 2159 146 HOH HOH . C 3 HOH A 60 2160 93 HOH HOH . C 3 HOH A 61 2161 15 HOH HOH . C 3 HOH A 62 2162 90 HOH HOH . C 3 HOH A 63 2163 27 HOH HOH . C 3 HOH A 64 2164 73 HOH HOH . C 3 HOH A 65 2165 139 HOH HOH . C 3 HOH A 66 2166 170 HOH HOH . C 3 HOH A 67 2167 35 HOH HOH . C 3 HOH A 68 2168 193 HOH HOH . C 3 HOH A 69 2169 4 HOH HOH . C 3 HOH A 70 2170 45 HOH HOH . C 3 HOH A 71 2171 105 HOH HOH . C 3 HOH A 72 2172 88 HOH HOH . C 3 HOH A 73 2173 137 HOH HOH . C 3 HOH A 74 2174 41 HOH HOH . C 3 HOH A 75 2175 91 HOH HOH . C 3 HOH A 76 2176 166 HOH HOH . C 3 HOH A 77 2177 64 HOH HOH . C 3 HOH A 78 2178 19 HOH HOH . C 3 HOH A 79 2179 81 HOH HOH . C 3 HOH A 80 2180 56 HOH HOH . C 3 HOH A 81 2181 106 HOH HOH . C 3 HOH A 82 2182 80 HOH HOH . C 3 HOH A 83 2183 57 HOH HOH . C 3 HOH A 84 2184 17 HOH HOH . C 3 HOH A 85 2185 53 HOH HOH . C 3 HOH A 86 2186 50 HOH HOH . C 3 HOH A 87 2187 1 HOH HOH . C 3 HOH A 88 2188 200 HOH HOH . C 3 HOH A 89 2189 191 HOH HOH . C 3 HOH A 90 2190 182 HOH HOH . C 3 HOH A 91 2191 24 HOH HOH . C 3 HOH A 92 2192 63 HOH HOH . C 3 HOH A 93 2193 171 HOH HOH . C 3 HOH A 94 2194 148 HOH HOH . C 3 HOH A 95 2195 18 HOH HOH . C 3 HOH A 96 2196 65 HOH HOH . C 3 HOH A 97 2197 113 HOH HOH . C 3 HOH A 98 2198 168 HOH HOH . C 3 HOH A 99 2199 144 HOH HOH . C 3 HOH A 100 2200 54 HOH HOH . C 3 HOH A 101 2201 164 HOH HOH . C 3 HOH A 102 2202 12 HOH HOH . C 3 HOH A 103 2203 11 HOH HOH . C 3 HOH A 104 2204 145 HOH HOH . C 3 HOH A 105 2205 33 HOH HOH . C 3 HOH A 106 2206 8 HOH HOH . C 3 HOH A 107 2207 82 HOH HOH . C 3 HOH A 108 2208 172 HOH HOH . C 3 HOH A 109 2209 181 HOH HOH . C 3 HOH A 110 2210 117 HOH HOH . C 3 HOH A 111 2211 95 HOH HOH . C 3 HOH A 112 2212 66 HOH HOH . C 3 HOH A 113 2213 189 HOH HOH . C 3 HOH A 114 2214 188 HOH HOH . C 3 HOH A 115 2215 126 HOH HOH . C 3 HOH A 116 2216 103 HOH HOH . C 3 HOH A 117 2217 22 HOH HOH . C 3 HOH A 118 2218 101 HOH HOH . C 3 HOH A 119 2219 29 HOH HOH . C 3 HOH A 120 2220 83 HOH HOH . C 3 HOH A 121 2221 156 HOH HOH . C 3 HOH A 122 2222 3 HOH HOH . C 3 HOH A 123 2223 147 HOH HOH . C 3 HOH A 124 2224 85 HOH HOH . C 3 HOH A 125 2225 138 HOH HOH . C 3 HOH A 126 2226 69 HOH HOH . C 3 HOH A 127 2227 143 HOH HOH . C 3 HOH A 128 2228 98 HOH HOH . C 3 HOH A 129 2229 157 HOH HOH . C 3 HOH A 130 2230 124 HOH HOH . C 3 HOH A 131 2231 99 HOH HOH . C 3 HOH A 132 2232 153 HOH HOH . C 3 HOH A 133 2233 192 HOH HOH . C 3 HOH A 134 2234 130 HOH HOH . C 3 HOH A 135 2235 108 HOH HOH . C 3 HOH A 136 2236 185 HOH HOH . C 3 HOH A 137 2237 141 HOH HOH . C 3 HOH A 138 2238 132 HOH HOH . C 3 HOH A 139 2239 97 HOH HOH . C 3 HOH A 140 2240 194 HOH HOH . C 3 HOH A 141 2241 127 HOH HOH . C 3 HOH A 142 2242 112 HOH HOH . C 3 HOH A 143 2243 162 HOH HOH . C 3 HOH A 144 2244 43 HOH HOH . C 3 HOH A 145 2245 176 HOH HOH . C 3 HOH A 146 2246 49 HOH HOH . C 3 HOH A 147 2247 31 HOH HOH . C 3 HOH A 148 2248 183 HOH HOH . C 3 HOH A 149 2249 135 HOH HOH . C 3 HOH A 150 2250 96 HOH HOH . C 3 HOH A 151 2251 102 HOH HOH . C 3 HOH A 152 2252 60 HOH HOH . C 3 HOH A 153 2253 119 HOH HOH . C 3 HOH A 154 2254 151 HOH HOH . C 3 HOH A 155 2255 187 HOH HOH . C 3 HOH A 156 2256 161 HOH HOH . C 3 HOH A 157 2257 123 HOH HOH . C 3 HOH A 158 2258 195 HOH HOH . C 3 HOH A 159 2259 94 HOH HOH . C 3 HOH A 160 2260 178 HOH HOH . C 3 HOH A 161 2261 128 HOH HOH . C 3 HOH A 162 2262 58 HOH HOH . C 3 HOH A 163 2263 121 HOH HOH . C 3 HOH A 164 2264 202 HOH HOH . C 3 HOH A 165 2265 110 HOH HOH . C 3 HOH A 166 2266 201 HOH HOH . C 3 HOH A 167 2267 155 HOH HOH . C 3 HOH A 168 2268 86 HOH HOH . C 3 HOH A 169 2269 150 HOH HOH . C 3 HOH A 170 2270 134 HOH HOH . C 3 HOH A 171 2271 104 HOH HOH . C 3 HOH A 172 2272 79 HOH HOH . C 3 HOH A 173 2273 115 HOH HOH . C 3 HOH A 174 2274 71 HOH HOH . C 3 HOH A 175 2275 55 HOH HOH . C 3 HOH A 176 2276 78 HOH HOH . C 3 HOH A 177 2277 199 HOH HOH . C 3 HOH A 178 2278 89 HOH HOH . C 3 HOH A 179 2279 180 HOH HOH . C 3 HOH A 180 2280 177 HOH HOH . C 3 HOH A 181 2281 118 HOH HOH . C 3 HOH A 182 2282 160 HOH HOH . C 3 HOH A 183 2283 42 HOH HOH . C 3 HOH A 184 2284 159 HOH HOH . C 3 HOH A 185 2285 87 HOH HOH . C 3 HOH A 186 2286 198 HOH HOH . C 3 HOH A 187 2287 109 HOH HOH . C 3 HOH A 188 2288 136 HOH HOH . C 3 HOH A 189 2289 111 HOH HOH . C 3 HOH A 190 2290 165 HOH HOH . C 3 HOH A 191 2291 184 HOH HOH . C 3 HOH A 192 2292 179 HOH HOH . C 3 HOH A 193 2293 197 HOH HOH . C 3 HOH A 194 2294 204 HOH HOH . C 3 HOH A 195 2295 67 HOH HOH . C 3 HOH A 196 2296 131 HOH HOH . C 3 HOH A 197 2297 140 HOH HOH . C 3 HOH A 198 2298 186 HOH HOH . C 3 HOH A 199 2299 122 HOH HOH . C 3 HOH A 200 2300 142 HOH HOH . C 3 HOH A 201 2301 175 HOH HOH . C 3 HOH A 202 2302 203 HOH HOH . C 3 HOH A 203 2303 133 HOH HOH . C 3 HOH A 204 2304 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 14.327 41.411 29.766 1 47.52 ? C1 EDO 2001 A 1 HETATM 2 O O1 EDO . . . B 2 13.985 41.927 31.118 1 45.83 ? O1 EDO 2001 A 1 HETATM 3 C C2 EDO . . . B 2 14.663 39.938 29.777 1 40.6 ? C2 EDO 2001 A 1 HETATM 4 O O2 EDO . . . B 2 15.88 39.609 30.356 1 29.85 ? O2 EDO 2001 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #