data_5PBX # _model_server_result.job_id 7SOwJjDKw_wBsr8Gdq_OHg _model_server_result.datetime_utc '2024-11-22 14:24:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5pbx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 5PBX # _exptl.entry_id 5PBX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5PBX _cell.length_a 82.897 _cell.length_b 96.492 _cell.length_c 57.923 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5PBX _atom_sites.fract_transf_matrix[1][1] 0.012063 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 2001 1 EDO EDO . C 3 HOH A 1 2101 116 HOH HOH . C 3 HOH A 2 2102 196 HOH HOH . C 3 HOH A 3 2103 51 HOH HOH . C 3 HOH A 4 2104 68 HOH HOH . C 3 HOH A 5 2105 92 HOH HOH . C 3 HOH A 6 2106 44 HOH HOH . C 3 HOH A 7 2107 21 HOH HOH . C 3 HOH A 8 2108 154 HOH HOH . C 3 HOH A 9 2109 38 HOH HOH . C 3 HOH A 10 2110 167 HOH HOH . C 3 HOH A 11 2111 34 HOH HOH . C 3 HOH A 12 2112 100 HOH HOH . C 3 HOH A 13 2113 40 HOH HOH . C 3 HOH A 14 2114 36 HOH HOH . C 3 HOH A 15 2115 13 HOH HOH . C 3 HOH A 16 2116 84 HOH HOH . C 3 HOH A 17 2117 47 HOH HOH . C 3 HOH A 18 2118 120 HOH HOH . C 3 HOH A 19 2119 6 HOH HOH . C 3 HOH A 20 2120 59 HOH HOH . C 3 HOH A 21 2121 48 HOH HOH . C 3 HOH A 22 2122 114 HOH HOH . C 3 HOH A 23 2123 23 HOH HOH . C 3 HOH A 24 2124 107 HOH HOH . C 3 HOH A 25 2125 52 HOH HOH . C 3 HOH A 26 2126 158 HOH HOH . C 3 HOH A 27 2127 163 HOH HOH . C 3 HOH A 28 2128 39 HOH HOH . C 3 HOH A 29 2129 37 HOH HOH . C 3 HOH A 30 2130 14 HOH HOH . C 3 HOH A 31 2131 20 HOH HOH . C 3 HOH A 32 2132 7 HOH HOH . C 3 HOH A 33 2133 173 HOH HOH . C 3 HOH A 34 2134 2 HOH HOH . C 3 HOH A 35 2135 9 HOH HOH . C 3 HOH A 36 2136 170 HOH HOH . C 3 HOH A 37 2137 169 HOH HOH . C 3 HOH A 38 2138 50 HOH HOH . C 3 HOH A 39 2139 90 HOH HOH . C 3 HOH A 40 2140 10 HOH HOH . C 3 HOH A 41 2141 149 HOH HOH . C 3 HOH A 42 2142 5 HOH HOH . C 3 HOH A 43 2143 74 HOH HOH . C 3 HOH A 44 2144 174 HOH HOH . C 3 HOH A 45 2145 70 HOH HOH . C 3 HOH A 46 2146 129 HOH HOH . C 3 HOH A 47 2147 91 HOH HOH . C 3 HOH A 48 2148 26 HOH HOH . C 3 HOH A 49 2149 61 HOH HOH . C 3 HOH A 50 2150 41 HOH HOH . C 3 HOH A 51 2151 146 HOH HOH . C 3 HOH A 52 2152 27 HOH HOH . C 3 HOH A 53 2153 72 HOH HOH . C 3 HOH A 54 2154 106 HOH HOH . C 3 HOH A 55 2155 81 HOH HOH . C 3 HOH A 56 2156 45 HOH HOH . C 3 HOH A 57 2157 62 HOH HOH . C 3 HOH A 58 2158 46 HOH HOH . C 3 HOH A 59 2159 193 HOH HOH . C 3 HOH A 60 2160 76 HOH HOH . C 3 HOH A 61 2161 166 HOH HOH . C 3 HOH A 62 2162 64 HOH HOH . C 3 HOH A 63 2163 25 HOH HOH . C 3 HOH A 64 2164 32 HOH HOH . C 3 HOH A 65 2165 30 HOH HOH . C 3 HOH A 66 2166 15 HOH HOH . C 3 HOH A 67 2167 75 HOH HOH . C 3 HOH A 68 2168 190 HOH HOH . C 3 HOH A 69 2169 16 HOH HOH . C 3 HOH A 70 2170 4 HOH HOH . C 3 HOH A 71 2171 28 HOH HOH . C 3 HOH A 72 2172 35 HOH HOH . C 3 HOH A 73 2173 93 HOH HOH . C 3 HOH A 74 2174 77 HOH HOH . C 3 HOH A 75 2175 200 HOH HOH . C 3 HOH A 76 2176 73 HOH HOH . C 3 HOH A 77 2177 105 HOH HOH . C 3 HOH A 78 2178 17 HOH HOH . C 3 HOH A 79 2179 19 HOH HOH . C 3 HOH A 80 2180 88 HOH HOH . C 3 HOH A 81 2181 148 HOH HOH . C 3 HOH A 82 2182 56 HOH HOH . C 3 HOH A 83 2183 168 HOH HOH . C 3 HOH A 84 2184 24 HOH HOH . C 3 HOH A 85 2185 137 HOH HOH . C 3 HOH A 86 2186 152 HOH HOH . C 3 HOH A 87 2187 191 HOH HOH . C 3 HOH A 88 2188 80 HOH HOH . C 3 HOH A 89 2189 182 HOH HOH . C 3 HOH A 90 2190 1 HOH HOH . C 3 HOH A 91 2191 164 HOH HOH . C 3 HOH A 92 2192 63 HOH HOH . C 3 HOH A 93 2193 66 HOH HOH . C 3 HOH A 94 2194 103 HOH HOH . C 3 HOH A 95 2195 65 HOH HOH . C 3 HOH A 96 2196 57 HOH HOH . C 3 HOH A 97 2197 172 HOH HOH . C 3 HOH A 98 2198 12 HOH HOH . C 3 HOH A 99 2199 95 HOH HOH . C 3 HOH A 100 2200 144 HOH HOH . C 3 HOH A 101 2201 11 HOH HOH . C 3 HOH A 102 2202 139 HOH HOH . C 3 HOH A 103 2203 181 HOH HOH . C 3 HOH A 104 2204 82 HOH HOH . C 3 HOH A 105 2205 33 HOH HOH . C 3 HOH A 106 2206 8 HOH HOH . C 3 HOH A 107 2207 117 HOH HOH . C 3 HOH A 108 2208 188 HOH HOH . C 3 HOH A 109 2209 54 HOH HOH . C 3 HOH A 110 2210 18 HOH HOH . C 3 HOH A 111 2211 53 HOH HOH . C 3 HOH A 112 2212 83 HOH HOH . C 3 HOH A 113 2213 145 HOH HOH . C 3 HOH A 114 2214 3 HOH HOH . C 3 HOH A 115 2215 189 HOH HOH . C 3 HOH A 116 2216 22 HOH HOH . C 3 HOH A 117 2217 85 HOH HOH . C 3 HOH A 118 2218 29 HOH HOH . C 3 HOH A 119 2219 113 HOH HOH . C 3 HOH A 120 2220 147 HOH HOH . C 3 HOH A 121 2221 156 HOH HOH . C 3 HOH A 122 2222 126 HOH HOH . C 3 HOH A 123 2223 171 HOH HOH . C 3 HOH A 124 2224 101 HOH HOH . C 3 HOH A 125 2225 124 HOH HOH . C 3 HOH A 126 2226 98 HOH HOH . C 3 HOH A 127 2227 69 HOH HOH . C 3 HOH A 128 2228 153 HOH HOH . C 3 HOH A 129 2229 138 HOH HOH . C 3 HOH A 130 2230 192 HOH HOH . C 3 HOH A 131 2231 143 HOH HOH . C 3 HOH A 132 2232 99 HOH HOH . C 3 HOH A 133 2233 185 HOH HOH . C 3 HOH A 134 2234 157 HOH HOH . C 3 HOH A 135 2235 108 HOH HOH . C 3 HOH A 136 2236 112 HOH HOH . C 3 HOH A 137 2237 183 HOH HOH . C 3 HOH A 138 2238 141 HOH HOH . C 3 HOH A 139 2239 97 HOH HOH . C 3 HOH A 140 2240 176 HOH HOH . C 3 HOH A 141 2241 43 HOH HOH . C 3 HOH A 142 2242 162 HOH HOH . C 3 HOH A 143 2243 127 HOH HOH . C 3 HOH A 144 2244 130 HOH HOH . C 3 HOH A 145 2245 132 HOH HOH . C 3 HOH A 146 2246 49 HOH HOH . C 3 HOH A 147 2247 96 HOH HOH . C 3 HOH A 148 2248 194 HOH HOH . C 3 HOH A 149 2249 151 HOH HOH . C 3 HOH A 150 2250 31 HOH HOH . C 3 HOH A 151 2251 119 HOH HOH . C 3 HOH A 152 2252 123 HOH HOH . C 3 HOH A 153 2253 60 HOH HOH . C 3 HOH A 154 2254 161 HOH HOH . C 3 HOH A 155 2255 135 HOH HOH . C 3 HOH A 156 2256 102 HOH HOH . C 3 HOH A 157 2257 202 HOH HOH . C 3 HOH A 158 2258 121 HOH HOH . C 3 HOH A 159 2259 134 HOH HOH . C 3 HOH A 160 2260 195 HOH HOH . C 3 HOH A 161 2261 110 HOH HOH . C 3 HOH A 162 2262 150 HOH HOH . C 3 HOH A 163 2263 155 HOH HOH . C 3 HOH A 164 2264 128 HOH HOH . C 3 HOH A 165 2265 94 HOH HOH . C 3 HOH A 166 2266 58 HOH HOH . C 3 HOH A 167 2267 104 HOH HOH . C 3 HOH A 168 2268 79 HOH HOH . C 3 HOH A 169 2269 86 HOH HOH . C 3 HOH A 170 2270 115 HOH HOH . C 3 HOH A 171 2271 71 HOH HOH . C 3 HOH A 172 2272 187 HOH HOH . C 3 HOH A 173 2273 136 HOH HOH . C 3 HOH A 174 2274 78 HOH HOH . C 3 HOH A 175 2275 55 HOH HOH . C 3 HOH A 176 2276 89 HOH HOH . C 3 HOH A 177 2277 42 HOH HOH . C 3 HOH A 178 2278 201 HOH HOH . C 3 HOH A 179 2279 87 HOH HOH . C 3 HOH A 180 2280 198 HOH HOH . C 3 HOH A 181 2281 118 HOH HOH . C 3 HOH A 182 2282 180 HOH HOH . C 3 HOH A 183 2283 197 HOH HOH . C 3 HOH A 184 2284 109 HOH HOH . C 3 HOH A 185 2285 111 HOH HOH . C 3 HOH A 186 2286 177 HOH HOH . C 3 HOH A 187 2287 178 HOH HOH . C 3 HOH A 188 2288 159 HOH HOH . C 3 HOH A 189 2289 165 HOH HOH . C 3 HOH A 190 2290 199 HOH HOH . C 3 HOH A 191 2291 160 HOH HOH . C 3 HOH A 192 2292 204 HOH HOH . C 3 HOH A 193 2293 67 HOH HOH . C 3 HOH A 194 2294 179 HOH HOH . C 3 HOH A 195 2295 184 HOH HOH . C 3 HOH A 196 2296 140 HOH HOH . C 3 HOH A 197 2297 186 HOH HOH . C 3 HOH A 198 2298 131 HOH HOH . C 3 HOH A 199 2299 122 HOH HOH . C 3 HOH A 200 2300 175 HOH HOH . C 3 HOH A 201 2301 142 HOH HOH . C 3 HOH A 202 2302 203 HOH HOH . C 3 HOH A 203 2303 133 HOH HOH . C 3 HOH A 204 2304 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 14.393 41.298 29.716 1 44.83 ? C1 EDO 2001 A 1 HETATM 2 O O1 EDO . . . B 2 14.018 41.811 31.072 1 43.59 ? O1 EDO 2001 A 1 HETATM 3 C C2 EDO . . . B 2 14.66 39.83 29.762 1 37.01 ? C2 EDO 2001 A 1 HETATM 4 O O2 EDO . . . B 2 15.898 39.517 30.287 1 28.46 ? O2 EDO 2001 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #