data_5PGC # _model_server_result.job_id FI-HJEIMOo8BakSbV0JLQg _model_server_result.datetime_utc '2024-11-13 03:50:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5pgc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 5PGC # _exptl.entry_id 5PGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5PGC _cell.length_a 81.56 _cell.length_b 96.618 _cell.length_c 58.117 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5PGC _atom_sites.fract_transf_matrix[1][1] 0.012261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 2001 1 EDO EDO . C 3 HOH A 1 2101 116 HOH HOH . C 3 HOH A 2 2102 92 HOH HOH . C 3 HOH A 3 2103 100 HOH HOH . C 3 HOH A 4 2104 36 HOH HOH . C 3 HOH A 5 2105 44 HOH HOH . C 3 HOH A 6 2106 137 HOH HOH . C 3 HOH A 7 2107 152 HOH HOH . C 3 HOH A 8 2108 129 HOH HOH . C 3 HOH A 9 2109 146 HOH HOH . C 3 HOH A 10 2110 28 HOH HOH . C 3 HOH A 11 2111 39 HOH HOH . C 3 HOH A 12 2112 73 HOH HOH . C 3 HOH A 13 2113 120 HOH HOH . C 3 HOH A 14 2114 46 HOH HOH . C 3 HOH A 15 2115 38 HOH HOH . C 3 HOH A 16 2116 196 HOH HOH . C 3 HOH A 17 2117 68 HOH HOH . C 3 HOH A 18 2118 13 HOH HOH . C 3 HOH A 19 2119 37 HOH HOH . C 3 HOH A 20 2120 41 HOH HOH . C 3 HOH A 21 2121 9 HOH HOH . C 3 HOH A 22 2122 52 HOH HOH . C 3 HOH A 23 2123 10 HOH HOH . C 3 HOH A 24 2124 59 HOH HOH . C 3 HOH A 25 2125 158 HOH HOH . C 3 HOH A 26 2126 40 HOH HOH . C 3 HOH A 27 2127 26 HOH HOH . C 3 HOH A 28 2128 114 HOH HOH . C 3 HOH A 29 2129 20 HOH HOH . C 3 HOH A 30 2130 171 HOH HOH . C 3 HOH A 31 2131 62 HOH HOH . C 3 HOH A 32 2132 7 HOH HOH . C 3 HOH A 33 2133 200 HOH HOH . C 3 HOH A 34 2134 32 HOH HOH . C 3 HOH A 35 2135 30 HOH HOH . C 3 HOH A 36 2136 17 HOH HOH . C 3 HOH A 37 2137 21 HOH HOH . C 3 HOH A 38 2138 34 HOH HOH . C 3 HOH A 39 2139 72 HOH HOH . C 3 HOH A 40 2140 191 HOH HOH . C 3 HOH A 41 2141 2 HOH HOH . C 3 HOH A 42 2142 70 HOH HOH . C 3 HOH A 43 2143 163 HOH HOH . C 3 HOH A 44 2144 167 HOH HOH . C 3 HOH A 45 2145 93 HOH HOH . C 3 HOH A 46 2146 48 HOH HOH . C 3 HOH A 47 2147 174 HOH HOH . C 3 HOH A 48 2148 24 HOH HOH . C 3 HOH A 49 2149 25 HOH HOH . C 3 HOH A 50 2150 75 HOH HOH . C 3 HOH A 51 2151 27 HOH HOH . C 3 HOH A 52 2152 6 HOH HOH . C 3 HOH A 53 2153 154 HOH HOH . C 3 HOH A 54 2154 19 HOH HOH . C 3 HOH A 55 2155 4 HOH HOH . C 3 HOH A 56 2156 105 HOH HOH . C 3 HOH A 57 2157 74 HOH HOH . C 3 HOH A 58 2158 63 HOH HOH . C 3 HOH A 59 2159 35 HOH HOH . C 3 HOH A 60 2160 5 HOH HOH . C 3 HOH A 61 2161 64 HOH HOH . C 3 HOH A 62 2162 47 HOH HOH . C 3 HOH A 63 2163 81 HOH HOH . C 3 HOH A 64 2164 148 HOH HOH . C 3 HOH A 65 2165 15 HOH HOH . C 3 HOH A 66 2166 14 HOH HOH . C 3 HOH A 67 2167 56 HOH HOH . C 3 HOH A 68 2168 23 HOH HOH . C 3 HOH A 69 2169 91 HOH HOH . C 3 HOH A 70 2170 45 HOH HOH . C 3 HOH A 71 2171 139 HOH HOH . C 3 HOH A 72 2172 88 HOH HOH . C 3 HOH A 73 2173 50 HOH HOH . C 3 HOH A 74 2174 84 HOH HOH . C 3 HOH A 75 2175 80 HOH HOH . C 3 HOH A 76 2176 106 HOH HOH . C 3 HOH A 77 2177 18 HOH HOH . C 3 HOH A 78 2178 193 HOH HOH . C 3 HOH A 79 2179 77 HOH HOH . C 3 HOH A 80 2180 90 HOH HOH . C 3 HOH A 81 2181 16 HOH HOH . C 3 HOH A 82 2182 66 HOH HOH . C 3 HOH A 83 2183 182 HOH HOH . C 3 HOH A 84 2184 113 HOH HOH . C 3 HOH A 85 2185 1 HOH HOH . C 3 HOH A 86 2186 170 HOH HOH . C 3 HOH A 87 2187 65 HOH HOH . C 3 HOH A 88 2188 101 HOH HOH . C 3 HOH A 89 2189 190 HOH HOH . C 3 HOH A 90 2190 172 HOH HOH . C 3 HOH A 91 2191 166 HOH HOH . C 3 HOH A 92 2192 76 HOH HOH . C 3 HOH A 93 2193 173 HOH HOH . C 3 HOH A 94 2194 53 HOH HOH . C 3 HOH A 95 2195 189 HOH HOH . C 3 HOH A 96 2196 57 HOH HOH . C 3 HOH A 97 2197 12 HOH HOH . C 3 HOH A 98 2198 11 HOH HOH . C 3 HOH A 99 2199 54 HOH HOH . C 3 HOH A 100 2200 144 HOH HOH . C 3 HOH A 101 2201 8 HOH HOH . C 3 HOH A 102 2202 107 HOH HOH . C 3 HOH A 103 2203 145 HOH HOH . C 3 HOH A 104 2204 22 HOH HOH . C 3 HOH A 105 2205 156 HOH HOH . C 3 HOH A 106 2206 33 HOH HOH . C 3 HOH A 107 2207 138 HOH HOH . C 3 HOH A 108 2208 169 HOH HOH . C 3 HOH A 109 2209 188 HOH HOH . C 3 HOH A 110 2210 149 HOH HOH . C 3 HOH A 111 2211 82 HOH HOH . C 3 HOH A 112 2212 3 HOH HOH . C 3 HOH A 113 2213 83 HOH HOH . C 3 HOH A 114 2214 168 HOH HOH . C 3 HOH A 115 2215 181 HOH HOH . C 3 HOH A 116 2216 51 HOH HOH . C 3 HOH A 117 2217 29 HOH HOH . C 3 HOH A 118 2218 164 HOH HOH . C 3 HOH A 119 2219 85 HOH HOH . C 3 HOH A 120 2220 127 HOH HOH . C 3 HOH A 121 2221 147 HOH HOH . C 3 HOH A 122 2222 95 HOH HOH . C 3 HOH A 123 2223 157 HOH HOH . C 3 HOH A 124 2224 126 HOH HOH . C 3 HOH A 125 2225 69 HOH HOH . C 3 HOH A 126 2226 103 HOH HOH . C 3 HOH A 127 2227 98 HOH HOH . C 3 HOH A 128 2228 124 HOH HOH . C 3 HOH A 129 2229 61 HOH HOH . C 3 HOH A 130 2230 117 HOH HOH . C 3 HOH A 131 2231 99 HOH HOH . C 3 HOH A 132 2232 153 HOH HOH . C 3 HOH A 133 2233 143 HOH HOH . C 3 HOH A 134 2234 102 HOH HOH . C 3 HOH A 135 2235 130 HOH HOH . C 3 HOH A 136 2236 192 HOH HOH . C 3 HOH A 137 2237 176 HOH HOH . C 3 HOH A 138 2238 184 HOH HOH . C 3 HOH A 139 2239 161 HOH HOH . C 3 HOH A 140 2240 185 HOH HOH . C 3 HOH A 141 2241 108 HOH HOH . C 3 HOH A 142 2242 119 HOH HOH . C 3 HOH A 143 2243 97 HOH HOH . C 3 HOH A 144 2244 141 HOH HOH . C 3 HOH A 145 2245 162 HOH HOH . C 3 HOH A 146 2246 49 HOH HOH . C 3 HOH A 147 2247 112 HOH HOH . C 3 HOH A 148 2248 96 HOH HOH . C 3 HOH A 149 2249 135 HOH HOH . C 3 HOH A 150 2250 60 HOH HOH . C 3 HOH A 151 2251 31 HOH HOH . C 3 HOH A 152 2252 132 HOH HOH . C 3 HOH A 153 2253 177 HOH HOH . C 3 HOH A 154 2254 110 HOH HOH . C 3 HOH A 155 2255 183 HOH HOH . C 3 HOH A 156 2256 43 HOH HOH . C 3 HOH A 157 2257 155 HOH HOH . C 3 HOH A 158 2258 180 HOH HOH . C 3 HOH A 159 2259 58 HOH HOH . C 3 HOH A 160 2260 128 HOH HOH . C 3 HOH A 161 2261 123 HOH HOH . C 3 HOH A 162 2262 194 HOH HOH . C 3 HOH A 163 2263 202 HOH HOH . C 3 HOH A 164 2264 151 HOH HOH . C 3 HOH A 165 2265 187 HOH HOH . C 3 HOH A 166 2266 79 HOH HOH . C 3 HOH A 167 2267 115 HOH HOH . C 3 HOH A 168 2268 134 HOH HOH . C 3 HOH A 169 2269 195 HOH HOH . C 3 HOH A 170 2270 86 HOH HOH . C 3 HOH A 171 2271 94 HOH HOH . C 3 HOH A 172 2272 197 HOH HOH . C 3 HOH A 173 2273 104 HOH HOH . C 3 HOH A 174 2274 71 HOH HOH . C 3 HOH A 175 2275 121 HOH HOH . C 3 HOH A 176 2276 150 HOH HOH . C 3 HOH A 177 2277 78 HOH HOH . C 3 HOH A 178 2278 55 HOH HOH . C 3 HOH A 179 2279 199 HOH HOH . C 3 HOH A 180 2280 111 HOH HOH . C 3 HOH A 181 2281 87 HOH HOH . C 3 HOH A 182 2282 109 HOH HOH . C 3 HOH A 183 2283 178 HOH HOH . C 3 HOH A 184 2284 136 HOH HOH . C 3 HOH A 185 2285 42 HOH HOH . C 3 HOH A 186 2286 160 HOH HOH . C 3 HOH A 187 2287 89 HOH HOH . C 3 HOH A 188 2288 198 HOH HOH . C 3 HOH A 189 2289 204 HOH HOH . C 3 HOH A 190 2290 159 HOH HOH . C 3 HOH A 191 2291 201 HOH HOH . C 3 HOH A 192 2292 118 HOH HOH . C 3 HOH A 193 2293 165 HOH HOH . C 3 HOH A 194 2294 186 HOH HOH . C 3 HOH A 195 2295 67 HOH HOH . C 3 HOH A 196 2296 131 HOH HOH . C 3 HOH A 197 2297 122 HOH HOH . C 3 HOH A 198 2298 142 HOH HOH . C 3 HOH A 199 2299 179 HOH HOH . C 3 HOH A 200 2300 140 HOH HOH . C 3 HOH A 201 2301 175 HOH HOH . C 3 HOH A 202 2302 203 HOH HOH . C 3 HOH A 203 2303 125 HOH HOH . C 3 HOH A 204 2304 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 14.192 40.771 29.302 1 36.5 ? C1 EDO 2001 A 1 HETATM 2 O O1 EDO . . . B 2 13.75 41.553 30.466 1 62.84 ? O1 EDO 2001 A 1 HETATM 3 C C2 EDO . . . B 2 14.484 39.503 30.054 1 22.64 ? C2 EDO 2001 A 1 HETATM 4 O O2 EDO . . . B 2 15.735 39.792 30.332 1 22.43 ? O2 EDO 2001 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #