data_5PGU # _model_server_result.job_id ZDTh6btQxpUfAA42wcdmVw _model_server_result.datetime_utc '2024-11-21 17:30:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5pgu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 5PGU # _exptl.entry_id 5PGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.462 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2-(4-fluorophenyl)-2-adamantyl]-1-(3-methoxyazetidin-1-yl)ethanone _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5PGU _cell.length_a 74.3 _cell.length_b 93.8 _cell.length_c 168.1 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C22 H28 F N O2' _chem_comp.formula_weight 357.462 _chem_comp.id 8K4 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2-(4-fluorophenyl)-2-adamantyl]-1-(3-methoxyazetidin-1-yl)ethanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F21 C15 8K4 sing 1 n n C26 O25 8K4 sing 2 n n C15 C14 8K4 doub 3 n y C15 C16 8K4 sing 4 n y O25 C23 8K4 sing 5 n n C14 C13 8K4 sing 6 n y C16 C17 8K4 doub 7 n y C23 C22 8K4 sing 8 n n C23 C24 8K4 sing 9 n n C13 C11 8K4 doub 10 n y C17 C11 8K4 sing 11 n y C22 N19 8K4 sing 12 n n C24 N19 8K4 sing 13 n n C11 C2 8K4 sing 14 n n N19 C18 8K4 sing 15 n n C18 C12 8K4 sing 16 n n C18 O20 8K4 doub 17 n n C2 C12 8K4 sing 18 n n C2 C3 8K4 sing 19 n n C2 C1 8K4 sing 20 n n C10 C3 8K4 sing 21 n n C10 C9 8K4 sing 22 n n C7 C1 8K4 sing 23 n n C7 C9 8K4 sing 24 n n C3 C4 8K4 sing 25 n n C1 C6 8K4 sing 26 n n C9 C8 8K4 sing 27 n n C4 C5 8K4 sing 28 n n C6 C5 8K4 sing 29 n n C8 C5 8K4 sing 30 n n C13 H43 8K4 sing 31 n n C17 H46 8K4 sing 32 n n C16 H45 8K4 sing 33 n n C22 H47 8K4 sing 34 n n C22 H48 8K4 sing 35 n n C23 H49 8K4 sing 36 n n C24 H51 8K4 sing 37 n n C24 H50 8K4 sing 38 n n C12 H42 8K4 sing 39 n n C12 H41 8K4 sing 40 n n C1 H27 8K4 sing 41 n n C3 H28 8K4 sing 42 n n C4 H30 8K4 sing 43 n n C4 H29 8K4 sing 44 n n C5 H31 8K4 sing 45 n n C6 H32 8K4 sing 46 n n C6 H33 8K4 sing 47 n n C7 H35 8K4 sing 48 n n C7 H34 8K4 sing 49 n n C8 H36 8K4 sing 50 n n C8 H37 8K4 sing 51 n n C9 H38 8K4 sing 52 n n C10 H39 8K4 sing 53 n n C10 H40 8K4 sing 54 n n C14 H44 8K4 sing 55 n n C26 H52 8K4 sing 56 n n C26 H53 8K4 sing 57 n n C26 H54 8K4 sing 58 n n # _atom_sites.entry_id 5PGU _atom_sites.fract_transf_matrix[1][1] 0.013459 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 301 301 NAP NAP . F 3 8K4 A 1 302 302 8K4 LG1 . G 2 NAP B 1 301 301 NAP NAP . H 3 8K4 B 1 302 302 8K4 LG1 . I 2 NAP D 1 301 301 NAP NAP . J 3 8K4 D 1 302 302 8K4 LG1 . K 2 NAP E 1 301 301 NAP NAP . L 3 8K4 E 1 302 302 8K4 LG1 . M 4 HOH A 1 401 66 HOH HOH . M 4 HOH A 2 402 87 HOH HOH . M 4 HOH A 3 403 56 HOH HOH . M 4 HOH A 4 404 7 HOH HOH . M 4 HOH A 5 405 81 HOH HOH . M 4 HOH A 6 406 84 HOH HOH . M 4 HOH A 7 407 47 HOH HOH . M 4 HOH A 8 408 19 HOH HOH . M 4 HOH A 9 409 80 HOH HOH . M 4 HOH A 10 410 83 HOH HOH . M 4 HOH A 11 411 88 HOH HOH . M 4 HOH A 12 412 2 HOH HOH . M 4 HOH A 13 413 51 HOH HOH . M 4 HOH A 14 414 78 HOH HOH . M 4 HOH A 15 415 68 HOH HOH . M 4 HOH A 16 416 70 HOH HOH . M 4 HOH A 17 417 27 HOH HOH . M 4 HOH A 18 418 49 HOH HOH . M 4 HOH A 19 419 62 HOH HOH . M 4 HOH A 20 420 44 HOH HOH . M 4 HOH A 21 421 12 HOH HOH . M 4 HOH A 22 422 39 HOH HOH . M 4 HOH A 23 423 32 HOH HOH . M 4 HOH A 24 424 43 HOH HOH . M 4 HOH A 25 425 24 HOH HOH . M 4 HOH A 26 426 25 HOH HOH . M 4 HOH A 27 427 8 HOH HOH . M 4 HOH A 28 428 57 HOH HOH . M 4 HOH A 29 429 37 HOH HOH . N 4 HOH B 1 401 67 HOH HOH . N 4 HOH B 2 402 71 HOH HOH . N 4 HOH B 3 403 14 HOH HOH . N 4 HOH B 4 404 31 HOH HOH . N 4 HOH B 5 405 69 HOH HOH . N 4 HOH B 6 406 1 HOH HOH . N 4 HOH B 7 407 55 HOH HOH . N 4 HOH B 8 408 6 HOH HOH . N 4 HOH B 9 409 76 HOH HOH . N 4 HOH B 10 410 26 HOH HOH . N 4 HOH B 11 411 17 HOH HOH . N 4 HOH B 12 412 22 HOH HOH . N 4 HOH B 13 413 18 HOH HOH . N 4 HOH B 14 414 72 HOH HOH . N 4 HOH B 15 415 60 HOH HOH . N 4 HOH B 16 416 29 HOH HOH . N 4 HOH B 17 417 42 HOH HOH . N 4 HOH B 18 418 36 HOH HOH . N 4 HOH B 19 419 50 HOH HOH . N 4 HOH B 20 420 53 HOH HOH . N 4 HOH B 21 421 65 HOH HOH . N 4 HOH B 22 422 75 HOH HOH . N 4 HOH B 23 423 79 HOH HOH . N 4 HOH B 24 424 23 HOH HOH . N 4 HOH B 25 425 73 HOH HOH . N 4 HOH B 26 426 59 HOH HOH . N 4 HOH B 27 427 11 HOH HOH . N 4 HOH B 28 428 10 HOH HOH . N 4 HOH B 29 429 52 HOH HOH . N 4 HOH B 30 430 35 HOH HOH . N 4 HOH B 31 431 4 HOH HOH . N 4 HOH B 32 432 40 HOH HOH . N 4 HOH B 33 433 9 HOH HOH . N 4 HOH B 34 434 46 HOH HOH . N 4 HOH B 35 435 5 HOH HOH . N 4 HOH B 36 436 38 HOH HOH . N 4 HOH B 37 437 21 HOH HOH . N 4 HOH B 38 438 3 HOH HOH . O 4 HOH D 1 401 64 HOH HOH . O 4 HOH D 2 402 54 HOH HOH . O 4 HOH D 3 403 82 HOH HOH . O 4 HOH D 4 404 48 HOH HOH . O 4 HOH D 5 405 34 HOH HOH . O 4 HOH D 6 406 58 HOH HOH . O 4 HOH D 7 407 45 HOH HOH . O 4 HOH D 8 408 33 HOH HOH . O 4 HOH D 9 409 15 HOH HOH . O 4 HOH D 10 410 85 HOH HOH . O 4 HOH D 11 411 13 HOH HOH . O 4 HOH D 12 412 77 HOH HOH . O 4 HOH D 13 413 28 HOH HOH . O 4 HOH D 14 414 63 HOH HOH . O 4 HOH D 15 415 20 HOH HOH . O 4 HOH D 16 416 61 HOH HOH . O 4 HOH D 17 417 74 HOH HOH . P 4 HOH E 1 401 86 HOH HOH . P 4 HOH E 2 402 30 HOH HOH . P 4 HOH E 3 403 41 HOH HOH . P 4 HOH E 4 404 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 8K4 . . . F 3 43.054 61.744 80.791 1 25.84 ? C13 8K4 302 A 1 HETATM 2 C C18 8K4 . . . F 3 45.29 59.452 83.093 1 33.13 ? C18 8K4 302 A 1 HETATM 3 C C17 8K4 . . . F 3 43.016 59.386 81.113 1 30.22 ? C17 8K4 302 A 1 HETATM 4 C C16 8K4 . . . F 3 43.127 59.19 79.743 1 28.38 ? C16 8K4 302 A 1 HETATM 5 C C15 8K4 . . . F 3 43.191 60.292 78.936 1 26.6 ? C15 8K4 302 A 1 HETATM 6 C C22 8K4 . . . F 3 46.494 60.586 81.116 1 38.44 ? C22 8K4 302 A 1 HETATM 7 C C23 8K4 . . . F 3 47.231 59.542 80.258 1 40.08 ? C23 8K4 302 A 1 HETATM 8 C C24 8K4 . . . F 3 46.874 58.479 81.314 1 36.97 ? C24 8K4 302 A 1 HETATM 9 C C11 8K4 . . . F 3 43.012 60.664 81.669 1 27.25 ? C11 8K4 302 A 1 HETATM 10 C C12 8K4 . . . F 3 44.611 60.727 83.537 1 30.81 ? C12 8K4 302 A 1 HETATM 11 C C1 8K4 . . . F 3 42.211 59.846 83.993 1 27.57 ? C1 8K4 302 A 1 HETATM 12 C C2 8K4 . . . F 3 43.09 60.878 83.226 1 28.04 ? C2 8K4 302 A 1 HETATM 13 C C3 8K4 . . . F 3 42.579 62.285 83.667 1 29.26 ? C3 8K4 302 A 1 HETATM 14 C C4 8K4 . . . F 3 42.72 62.471 85.185 1 26.35 ? C4 8K4 302 A 1 HETATM 15 C C5 8K4 . . . F 3 41.885 61.425 85.918 1 27.86 ? C5 8K4 302 A 1 HETATM 16 C C6 8K4 . . . F 3 42.352 60.028 85.512 1 26.9 ? C6 8K4 302 A 1 HETATM 17 C C7 8K4 . . . F 3 40.728 60.018 83.632 1 28.97 ? C7 8K4 302 A 1 HETATM 18 C C8 8K4 . . . F 3 40.412 61.596 85.542 1 29.79 ? C8 8K4 302 A 1 HETATM 19 C C9 8K4 . . . F 3 40.252 61.417 84.032 1 30.1 ? C9 8K4 302 A 1 HETATM 20 C C10 8K4 . . . F 3 41.092 62.467 83.306 1 31.01 ? C10 8K4 302 A 1 HETATM 21 C C14 8K4 . . . F 3 43.145 61.565 79.42 1 25.11 ? C14 8K4 302 A 1 HETATM 22 N N19 8K4 . . . F 3 46.092 59.5 82.01 1 35.88 ? N19 8K4 302 A 1 HETATM 23 O O20 8K4 . . . F 3 45.129 58.421 83.728 1 34.48 ? O20 8K4 302 A 1 HETATM 24 F F21 8K4 . . . F 3 43.315 60.11 77.588 1 27.09 ? F21 8K4 302 A 1 HETATM 25 O O25 8K4 . . . F 3 46.429 59.372 79.092 1 44.92 ? O25 8K4 302 A 1 HETATM 26 C C26 8K4 . . . F 3 47.147 59.458 77.882 1 45.42 ? C26 8K4 302 A 1 HETATM 27 H H43 8K4 . . . F 3 43.006 62.77 81.147 0 25.79 ? H43 8K4 302 A 1 HETATM 28 H H46 8K4 . . . F 3 42.93 58.492 81.728 0 30.26 ? H46 8K4 302 A 1 HETATM 29 H H45 8K4 . . . F 3 43.162 58.185 79.328 0 28.46 ? H45 8K4 302 A 1 HETATM 30 H H47 8K4 . . . F 3 45.679 61.112 80.626 0 38.44 ? H47 8K4 302 A 1 HETATM 31 H H48 8K4 . . . F 3 47.121 61.356 81.559 0 38.44 ? H48 8K4 302 A 1 HETATM 32 H H49 8K4 . . . F 3 48.289 59.711 80.061 0 40.04 ? H49 8K4 302 A 1 HETATM 33 H H51 8K4 . . . F 3 47.717 58.059 81.861 0 37.01 ? H51 8K4 302 A 1 HETATM 34 H H50 8K4 . . . F 3 46.296 57.647 80.917 0 37.01 ? H50 8K4 302 A 1 HETATM 35 H H42 8K4 . . . F 3 45.154 61.561 83.095 0 30.8 ? H42 8K4 302 A 1 HETATM 36 H H41 8K4 . . . F 3 44.785 60.877 84.6 0 30.8 ? H41 8K4 302 A 1 HETATM 37 H H27 8K4 . . . F 3 42.51 58.824 83.77 0 27.57 ? H27 8K4 302 A 1 HETATM 38 H H28 8K4 . . . F 3 43.158 63.082 83.205 0 29.32 ? H28 8K4 302 A 1 HETATM 39 H H30 8K4 . . . F 3 42.367 63.466 85.452 0 26.4 ? H30 8K4 302 A 1 HETATM 40 H H29 8K4 . . . F 3 43.755 62.479 85.523 0 26.4 ? H29 8K4 302 A 1 HETATM 41 H H31 8K4 . . . F 3 42.006 61.551 86.992 0 27.86 ? H31 8K4 302 A 1 HETATM 42 H H32 8K4 . . . F 3 43.354 59.813 85.879 0 26.92 ? H32 8K4 302 A 1 HETATM 43 H H33 8K4 . . . F 3 41.74 59.283 86.018 0 26.92 ? H33 8K4 302 A 1 HETATM 44 H H35 8K4 . . . F 3 40.135 59.261 84.144 0 28.93 ? H35 8K4 302 A 1 HETATM 45 H H34 8K4 . . . F 3 40.534 59.834 82.576 0 28.93 ? H34 8K4 302 A 1 HETATM 46 H H36 8K4 . . . F 3 39.808 60.861 86.068 0 29.82 ? H36 8K4 302 A 1 HETATM 47 H H37 8K4 . . . F 3 40.034 62.565 85.865 0 29.82 ? H37 8K4 302 A 1 HETATM 48 H H38 8K4 . . . F 3 39.203 61.536 83.762 0 30.13 ? H38 8K4 302 A 1 HETATM 49 H H39 8K4 . . . F 3 40.898 62.43 82.235 0 31.04 ? H39 8K4 302 A 1 HETATM 50 H H40 8K4 . . . F 3 40.769 63.467 83.594 0 31.04 ? H40 8K4 302 A 1 HETATM 51 H H44 8K4 . . . F 3 43.177 62.424 78.752 0 25.01 ? H44 8K4 302 A 1 HETATM 52 H H52 8K4 . . . F 3 46.387 59.355 77.109 0 45.37 ? H52 8K4 302 A 1 HETATM 53 H H53 8K4 . . . F 3 47.873 58.65 77.801 0 45.37 ? H53 8K4 302 A 1 HETATM 54 H H54 8K4 . . . F 3 47.664 60.408 77.761 0 45.37 ? H54 8K4 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 82 _model_server_stats.query_time_ms 377 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 54 #