data_5PGU
#
_model_server_result.job_id            tArOv4iGBt2LpspA-bq_DA 
_model_server_result.datetime_utc      '2024-10-19 19:53:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5pgu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":302}' 
#
_entry.id    5PGU 
#
_exptl.entry_id    5PGU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              357.462 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[2-(4-fluorophenyl)-2-adamantyl]-1-(3-methoxyazetidin-1-yl)ethanone 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5PGU 
_cell.length_a            74.3 
_cell.length_b            93.8 
_cell.length_c            168.1 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5PGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C22 H28 F N O2' 
_chem_comp.formula_weight    357.462 
_chem_comp.id                8K4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[2-(4-fluorophenyl)-2-adamantyl]-1-(3-methoxyazetidin-1-yl)ethanone 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F21 C15 8K4 sing 1 n n 
C26 O25 8K4 sing 2 n n 
C15 C14 8K4 doub 3 n y 
C15 C16 8K4 sing 4 n y 
O25 C23 8K4 sing 5 n n 
C14 C13 8K4 sing 6 n y 
C16 C17 8K4 doub 7 n y 
C23 C22 8K4 sing 8 n n 
C23 C24 8K4 sing 9 n n 
C13 C11 8K4 doub 10 n y 
C17 C11 8K4 sing 11 n y 
C22 N19 8K4 sing 12 n n 
C24 N19 8K4 sing 13 n n 
C11 C2 8K4 sing 14 n n 
N19 C18 8K4 sing 15 n n 
C18 C12 8K4 sing 16 n n 
C18 O20 8K4 doub 17 n n 
C2 C12 8K4 sing 18 n n 
C2 C3 8K4 sing 19 n n 
C2 C1 8K4 sing 20 n n 
C10 C3 8K4 sing 21 n n 
C10 C9 8K4 sing 22 n n 
C7 C1 8K4 sing 23 n n 
C7 C9 8K4 sing 24 n n 
C3 C4 8K4 sing 25 n n 
C1 C6 8K4 sing 26 n n 
C9 C8 8K4 sing 27 n n 
C4 C5 8K4 sing 28 n n 
C6 C5 8K4 sing 29 n n 
C8 C5 8K4 sing 30 n n 
C13 H43 8K4 sing 31 n n 
C17 H46 8K4 sing 32 n n 
C16 H45 8K4 sing 33 n n 
C22 H47 8K4 sing 34 n n 
C22 H48 8K4 sing 35 n n 
C23 H49 8K4 sing 36 n n 
C24 H51 8K4 sing 37 n n 
C24 H50 8K4 sing 38 n n 
C12 H42 8K4 sing 39 n n 
C12 H41 8K4 sing 40 n n 
C1 H27 8K4 sing 41 n n 
C3 H28 8K4 sing 42 n n 
C4 H30 8K4 sing 43 n n 
C4 H29 8K4 sing 44 n n 
C5 H31 8K4 sing 45 n n 
C6 H32 8K4 sing 46 n n 
C6 H33 8K4 sing 47 n n 
C7 H35 8K4 sing 48 n n 
C7 H34 8K4 sing 49 n n 
C8 H36 8K4 sing 50 n n 
C8 H37 8K4 sing 51 n n 
C9 H38 8K4 sing 52 n n 
C10 H39 8K4 sing 53 n n 
C10 H40 8K4 sing 54 n n 
C14 H44 8K4 sing 55 n n 
C26 H52 8K4 sing 56 n n 
C26 H53 8K4 sing 57 n n 
C26 H54 8K4 sing 58 n n 
#
_atom_sites.entry_id                     5PGU 
_atom_sites.fract_transf_matrix[1][1]    0.013459 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010661 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005949 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 301 301 NAP NAP . 
F 3 8K4 A 1 302 302 8K4 LG1 . 
G 2 NAP B 1 301 301 NAP NAP . 
H 3 8K4 B 1 302 302 8K4 LG1 . 
I 2 NAP D 1 301 301 NAP NAP . 
J 3 8K4 D 1 302 302 8K4 LG1 . 
K 2 NAP E 1 301 301 NAP NAP . 
L 3 8K4 E 1 302 302 8K4 LG1 . 
M 4 HOH A 1 401 66 HOH HOH . 
M 4 HOH A 2 402 87 HOH HOH . 
M 4 HOH A 3 403 56 HOH HOH . 
M 4 HOH A 4 404 7 HOH HOH . 
M 4 HOH A 5 405 81 HOH HOH . 
M 4 HOH A 6 406 84 HOH HOH . 
M 4 HOH A 7 407 47 HOH HOH . 
M 4 HOH A 8 408 19 HOH HOH . 
M 4 HOH A 9 409 80 HOH HOH . 
M 4 HOH A 10 410 83 HOH HOH . 
M 4 HOH A 11 411 88 HOH HOH . 
M 4 HOH A 12 412 2 HOH HOH . 
M 4 HOH A 13 413 51 HOH HOH . 
M 4 HOH A 14 414 78 HOH HOH . 
M 4 HOH A 15 415 68 HOH HOH . 
M 4 HOH A 16 416 70 HOH HOH . 
M 4 HOH A 17 417 27 HOH HOH . 
M 4 HOH A 18 418 49 HOH HOH . 
M 4 HOH A 19 419 62 HOH HOH . 
M 4 HOH A 20 420 44 HOH HOH . 
M 4 HOH A 21 421 12 HOH HOH . 
M 4 HOH A 22 422 39 HOH HOH . 
M 4 HOH A 23 423 32 HOH HOH . 
M 4 HOH A 24 424 43 HOH HOH . 
M 4 HOH A 25 425 24 HOH HOH . 
M 4 HOH A 26 426 25 HOH HOH . 
M 4 HOH A 27 427 8 HOH HOH . 
M 4 HOH A 28 428 57 HOH HOH . 
M 4 HOH A 29 429 37 HOH HOH . 
N 4 HOH B 1 401 67 HOH HOH . 
N 4 HOH B 2 402 71 HOH HOH . 
N 4 HOH B 3 403 14 HOH HOH . 
N 4 HOH B 4 404 31 HOH HOH . 
N 4 HOH B 5 405 69 HOH HOH . 
N 4 HOH B 6 406 1 HOH HOH . 
N 4 HOH B 7 407 55 HOH HOH . 
N 4 HOH B 8 408 6 HOH HOH . 
N 4 HOH B 9 409 76 HOH HOH . 
N 4 HOH B 10 410 26 HOH HOH . 
N 4 HOH B 11 411 17 HOH HOH . 
N 4 HOH B 12 412 22 HOH HOH . 
N 4 HOH B 13 413 18 HOH HOH . 
N 4 HOH B 14 414 72 HOH HOH . 
N 4 HOH B 15 415 60 HOH HOH . 
N 4 HOH B 16 416 29 HOH HOH . 
N 4 HOH B 17 417 42 HOH HOH . 
N 4 HOH B 18 418 36 HOH HOH . 
N 4 HOH B 19 419 50 HOH HOH . 
N 4 HOH B 20 420 53 HOH HOH . 
N 4 HOH B 21 421 65 HOH HOH . 
N 4 HOH B 22 422 75 HOH HOH . 
N 4 HOH B 23 423 79 HOH HOH . 
N 4 HOH B 24 424 23 HOH HOH . 
N 4 HOH B 25 425 73 HOH HOH . 
N 4 HOH B 26 426 59 HOH HOH . 
N 4 HOH B 27 427 11 HOH HOH . 
N 4 HOH B 28 428 10 HOH HOH . 
N 4 HOH B 29 429 52 HOH HOH . 
N 4 HOH B 30 430 35 HOH HOH . 
N 4 HOH B 31 431 4 HOH HOH . 
N 4 HOH B 32 432 40 HOH HOH . 
N 4 HOH B 33 433 9 HOH HOH . 
N 4 HOH B 34 434 46 HOH HOH . 
N 4 HOH B 35 435 5 HOH HOH . 
N 4 HOH B 36 436 38 HOH HOH . 
N 4 HOH B 37 437 21 HOH HOH . 
N 4 HOH B 38 438 3 HOH HOH . 
O 4 HOH D 1 401 64 HOH HOH . 
O 4 HOH D 2 402 54 HOH HOH . 
O 4 HOH D 3 403 82 HOH HOH . 
O 4 HOH D 4 404 48 HOH HOH . 
O 4 HOH D 5 405 34 HOH HOH . 
O 4 HOH D 6 406 58 HOH HOH . 
O 4 HOH D 7 407 45 HOH HOH . 
O 4 HOH D 8 408 33 HOH HOH . 
O 4 HOH D 9 409 15 HOH HOH . 
O 4 HOH D 10 410 85 HOH HOH . 
O 4 HOH D 11 411 13 HOH HOH . 
O 4 HOH D 12 412 77 HOH HOH . 
O 4 HOH D 13 413 28 HOH HOH . 
O 4 HOH D 14 414 63 HOH HOH . 
O 4 HOH D 15 415 20 HOH HOH . 
O 4 HOH D 16 416 61 HOH HOH . 
O 4 HOH D 17 417 74 HOH HOH . 
P 4 HOH E 1 401 86 HOH HOH . 
P 4 HOH E 2 402 30 HOH HOH . 
P 4 HOH E 3 403 41 HOH HOH . 
P 4 HOH E 4 404 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 8K4 . . . L 3 23.866 75.112 113.401 1 38.68 ? C13 8K4 302 E 1 
HETATM 2 C C18 8K4 . . . L 3 21.825 71.886 114.105 1 41.02 ? C18 8K4 302 E 1 
HETATM 3 C C17 8K4 . . . L 3 24.131 73.54 115.176 1 40.54 ? C17 8K4 302 E 1 
HETATM 4 C C16 8K4 . . . L 3 24.033 74.559 116.108 1 40.34 ? C16 8K4 302 E 1 
HETATM 5 C C15 8K4 . . . L 3 23.849 75.833 115.653 1 42.52 ? C15 8K4 302 E 1 
HETATM 6 C C22 8K4 . . . L 3 20.555 74.134 114.297 1 49.67 ? C22 8K4 302 E 1 
HETATM 7 C C23 8K4 . . . L 3 19.342 73.919 115.264 1 52.16 ? C23 8K4 302 E 1 
HETATM 8 C C24 8K4 . . . L 3 20.129 72.711 115.853 1 49.86 ? C24 8K4 302 E 1 
HETATM 9 C C11 8K4 . . . L 3 24.028 73.789 113.807 1 40.21 ? C11 8K4 302 E 1 
HETATM 10 C C12 8K4 . . . L 3 22.461 72.227 112.778 1 40.99 ? C12 8K4 302 E 1 
HETATM 11 C C1 8K4 . . . L 3 24.903 71.423 113.185 1 38.55 ? C1 8K4 302 E 1 
HETATM 12 C C2 8K4 . . . L 3 23.974 72.604 112.772 1 40.19 ? C2 8K4 302 E 1 
HETATM 13 C C3 8K4 . . . L 3 24.425 73.018 111.338 1 40.59 ? C3 8K4 302 E 1 
HETATM 14 C C4 8K4 . . . L 3 24.283 71.843 110.355 1 39.47 ? C4 8K4 302 E 1 
HETATM 15 C C5 8K4 . . . L 3 25.167 70.681 110.802 1 38.91 ? C5 8K4 302 E 1 
HETATM 16 C C6 8K4 . . . L 3 24.76 70.245 112.208 1 39.02 ? C6 8K4 302 E 1 
HETATM 17 C C7 8K4 . . . L 3 26.375 71.863 113.188 1 36.94 ? C7 8K4 302 E 1 
HETATM 18 C C8 8K4 . . . L 3 26.628 71.131 110.814 1 39.57 ? C8 8K4 302 E 1 
HETATM 19 C C9 8K4 . . . L 3 26.788 72.304 111.784 1 38.78 ? C9 8K4 302 E 1 
HETATM 20 C C10 8K4 . . . L 3 25.897 73.461 111.332 1 40.4 ? C10 8K4 302 E 1 
HETATM 21 C C14 8K4 . . . L 3 23.776 76.144 114.319 1 40.63 ? C14 8K4 302 E 1 
HETATM 22 N N19 8K4 . . . L 3 20.994 72.788 114.673 1 47.95 ? N19 8K4 302 E 1 
HETATM 23 O O20 8K4 . . . L 3 22.026 70.793 114.608 1 34.45 ? O20 8K4 302 E 1 
HETATM 24 F F21 8K4 . . . L 3 23.694 76.832 116.563 1 43.84 ? F21 8K4 302 E 1 
HETATM 25 O O25 8K4 . . . L 3 19.061 75.01 116.15 1 58 ? O25 8K4 302 E 1 
HETATM 26 C C26 8K4 . . . L 3 20.203 75.68 116.7 1 59.26 ? C26 8K4 302 E 1 
HETATM 27 H H43 8K4 . . . L 3 23.806 75.378 112.349 0 38.62 ? H43 8K4 302 E 1 
HETATM 28 H H46 8K4 . . . L 3 24.277 72.537 115.572 0 40.44 ? H46 8K4 302 E 1 
HETATM 29 H H45 8K4 . . . L 3 24.104 74.345 117.173 0 40.3 ? H45 8K4 302 E 1 
HETATM 30 H H47 8K4 . . . L 3 21.276 74.917 114.519 0 49.64 ? H47 8K4 302 E 1 
HETATM 31 H H48 8K4 . . . L 3 20.285 74.274 113.252 0 49.64 ? H48 8K4 302 E 1 
HETATM 32 H H49 8K4 . . . L 3 18.414 73.633 114.771 0 52.06 ? H49 8K4 302 E 1 
HETATM 33 H H51 8K4 . . . L 3 19.547 71.797 115.955 0 49.85 ? H51 8K4 302 E 1 
HETATM 34 H H50 8K4 . . . L 3 20.635 72.865 116.805 0 49.85 ? H50 8K4 302 E 1 
HETATM 35 H H42 8K4 . . . L 3 21.888 73.033 112.324 0 41 ? H42 8K4 302 E 1 
HETATM 36 H H41 8K4 . . . L 3 22.292 71.409 112.082 0 41 ? H41 8K4 302 E 1 
HETATM 37 H H27 8K4 . . . L 3 24.646 71.04 114.17 0 38.56 ? H27 8K4 302 E 1 
HETATM 38 H H28 8K4 . . . L 3 23.811 73.826 110.944 0 40.57 ? H28 8K4 302 E 1 
HETATM 39 H H30 8K4 . . . L 3 24.592 72.174 109.366 0 39.42 ? H30 8K4 302 E 1 
HETATM 40 H H29 8K4 . . . L 3 23.251 71.534 110.201 0 39.42 ? H29 8K4 302 E 1 
HETATM 41 H H31 8K4 . . . L 3 25.046 69.846 110.113 0 38.9 ? H31 8K4 302 E 1 
HETATM 42 H H32 8K4 . . . L 3 23.769 69.795 112.223 0 38.98 ? H32 8K4 302 E 1 
HETATM 43 H H33 8K4 . . . L 3 25.405 69.431 112.535 0 38.98 ? H33 8K4 302 E 1 
HETATM 44 H H35 8K4 . . . L 3 27.005 71.04 113.521 0 36.93 ? H35 8K4 302 E 1 
HETATM 45 H H34 8K4 . . . L 3 26.57 72.655 113.91 0 36.93 ? H34 8K4 302 E 1 
HETATM 46 H H36 8K4 . . . L 3 27.276 70.311 111.113 0 39.52 ? H36 8K4 302 E 1 
HETATM 47 H H37 8K4 . . . L 3 26.959 71.405 109.814 0 39.52 ? H37 8K4 302 E 1 
HETATM 48 H H38 8K4 . . . L 3 27.828 72.626 111.794 0 38.71 ? H38 8K4 302 E 1 
HETATM 49 H H39 8K4 . . . L 3 26.078 74.34 111.948 0 40.35 ? H39 8K4 302 E 1 
HETATM 50 H H40 8K4 . . . L 3 26.177 73.781 110.329 0 40.35 ? H40 8K4 302 E 1 
HETATM 51 H H44 8K4 . . . L 3 23.652 77.172 113.983 0 40.58 ? H44 8K4 302 E 1 
HETATM 52 H H52 8K4 . . . L 3 20.417 76.47 115.981 0 59.21 ? H52 8K4 302 E 1 
HETATM 53 H H53 8K4 . . . L 3 21.093 75.069 116.843 0 59.21 ? H53 8K4 302 E 1 
HETATM 54 H H54 8K4 . . . L 3 19.971 76.147 117.656 0 59.21 ? H54 8K4 302 E 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           54 
#