data_5PGX # _model_server_result.job_id fAFxtoSBd0ubIeJ8XkMzmw _model_server_result.datetime_utc '2024-12-22 01:08:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5pgx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 5PGX # _exptl.entry_id 5PGX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 355.471 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2-BENZYL-6-HYDROXYADAMANTAN-2-YL)-1-(3-HYDROXYAZETIDIN-1-YL)ETHAN-1-ONE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5PGX _cell.length_a 74.6 _cell.length_b 93.3 _cell.length_c 168.5 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C22 H29 N O3' _chem_comp.formula_weight 355.471 _chem_comp.id 8KD _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2-BENZYL-6-HYDROXYADAMANTAN-2-YL)-1-(3-HYDROXYAZETIDIN-1-YL)ETHAN-1-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O26 C8 8KD sing 1 n n C5 C8 8KD sing 2 n n C5 C4 8KD sing 3 n n C5 C6 8KD sing 4 n n C8 C9 8KD sing 5 n n C4 C3 8KD sing 6 n n C6 C1 8KD sing 7 n n C9 C10 8KD sing 8 n n C9 C7 8KD sing 9 n n C10 C3 8KD sing 10 n n C3 C2 8KD sing 11 n n C1 C7 8KD sing 12 n n C1 C2 8KD sing 13 n n C11 C2 8KD sing 14 n n C11 C14 8KD sing 15 n n C2 C12 8KD sing 16 n n C21 C14 8KD doub 17 n y C21 C20 8KD sing 18 n y C14 C13 8KD sing 19 n y C20 C19 8KD doub 20 n y C12 C15 8KD sing 21 n n C13 C18 8KD doub 22 n y C19 C18 8KD sing 23 n y C15 O17 8KD doub 24 n n C15 N16 8KD sing 25 n n N16 C22 8KD sing 26 n n N16 C24 8KD sing 27 n n C22 C23 8KD sing 28 n n C24 C23 8KD sing 29 n n C23 O25 8KD sing 30 n n C13 H44 8KD sing 31 n n C18 H45 8KD sing 32 n n C19 H46 8KD sing 33 n n C20 H47 8KD sing 34 n n C21 H48 8KD sing 35 n n C22 H50 8KD sing 36 n n C22 H49 8KD sing 37 n n C23 H51 8KD sing 38 n n C24 H52 8KD sing 39 n n C24 H53 8KD sing 40 n n C11 H40 8KD sing 41 n n C11 H41 8KD sing 42 n n C12 H42 8KD sing 43 n n C12 H43 8KD sing 44 n n C1 H27 8KD sing 45 n n C3 H28 8KD sing 46 n n C4 H29 8KD sing 47 n n C4 H30 8KD sing 48 n n C5 H31 8KD sing 49 n n C6 H33 8KD sing 50 n n C6 H32 8KD sing 51 n n C7 H34 8KD sing 52 n n C7 H35 8KD sing 53 n n C8 H36 8KD sing 54 n n C9 H37 8KD sing 55 n n C10 H39 8KD sing 56 n n C10 H38 8KD sing 57 n n O25 H54 8KD sing 58 n n O26 H55 8KD sing 59 n n # _atom_sites.entry_id 5PGX _atom_sites.fract_transf_matrix[1][1] 0.013405 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 301 301 NAP NAP . F 3 8KD A 1 302 302 8KD LG1 . G 2 NAP B 1 301 301 NAP NAP . H 3 8KD B 1 302 302 8KD LG1 . I 2 NAP D 1 301 301 NAP NAP . J 3 8KD D 1 302 302 8KD LG1 . K 2 NAP E 1 301 301 NAP NAP . L 3 8KD E 1 302 302 8KD LG1 . M 4 HOH A 1 401 9 HOH HOH . M 4 HOH A 2 402 3 HOH HOH . M 4 HOH A 3 403 30 HOH HOH . M 4 HOH A 4 404 8 HOH HOH . M 4 HOH A 5 405 5 HOH HOH . M 4 HOH A 6 406 18 HOH HOH . N 4 HOH B 1 401 35 HOH HOH . N 4 HOH B 2 402 19 HOH HOH . N 4 HOH B 3 403 14 HOH HOH . N 4 HOH B 4 404 31 HOH HOH . N 4 HOH B 5 405 11 HOH HOH . N 4 HOH B 6 406 23 HOH HOH . N 4 HOH B 7 407 2 HOH HOH . N 4 HOH B 8 408 10 HOH HOH . N 4 HOH B 9 409 24 HOH HOH . N 4 HOH B 10 410 33 HOH HOH . N 4 HOH B 11 411 32 HOH HOH . O 4 HOH D 1 401 7 HOH HOH . O 4 HOH D 2 402 4 HOH HOH . O 4 HOH D 3 403 37 HOH HOH . O 4 HOH D 4 404 16 HOH HOH . O 4 HOH D 5 405 12 HOH HOH . O 4 HOH D 6 406 1 HOH HOH . O 4 HOH D 7 407 13 HOH HOH . O 4 HOH D 8 408 6 HOH HOH . O 4 HOH D 9 409 29 HOH HOH . O 4 HOH D 10 410 15 HOH HOH . O 4 HOH D 11 411 22 HOH HOH . O 4 HOH D 12 412 28 HOH HOH . O 4 HOH D 13 413 17 HOH HOH . O 4 HOH D 14 414 36 HOH HOH . O 4 HOH D 15 415 25 HOH HOH . P 4 HOH E 1 401 39 HOH HOH . P 4 HOH E 2 402 20 HOH HOH . P 4 HOH E 3 403 21 HOH HOH . P 4 HOH E 4 404 38 HOH HOH . P 4 HOH E 5 405 34 HOH HOH . P 4 HOH E 6 406 27 HOH HOH . P 4 HOH E 7 407 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 8KD . . . F 3 42.15 61.04 82.554 1 41.76 ? C13 8KD 302 A 1 HETATM 2 C C18 8KD . . . F 3 41.145 61.717 83.224 1 41.84 ? C18 8KD 302 A 1 HETATM 3 C C15 8KD . . . F 3 45.151 61.382 83.533 1 36.63 ? C15 8KD 302 A 1 HETATM 4 C C19 8KD . . . F 3 40.789 62.993 82.833 1 42.64 ? C19 8KD 302 A 1 HETATM 5 C C20 8KD . . . F 3 41.44 63.589 81.772 1 42.54 ? C20 8KD 302 A 1 HETATM 6 C C21 8KD . . . F 3 42.447 62.911 81.103 1 41.83 ? C21 8KD 302 A 1 HETATM 7 C C22 8KD . . . F 3 43.999 63.431 84.631 1 34.64 ? C22 8KD 302 A 1 HETATM 8 C C23 8KD . . . F 3 43.23 62.935 85.901 1 33.79 ? C23 8KD 302 A 1 HETATM 9 C C24 8KD . . . F 3 44.176 61.697 85.883 1 34.77 ? C24 8KD 302 A 1 HETATM 10 C C11 8KD . . . F 3 43.941 60.902 80.789 1 42.53 ? C11 8KD 302 A 1 HETATM 11 C C12 8KD . . . F 3 45.639 62.125 82.307 1 39.58 ? C12 8KD 302 A 1 HETATM 12 C C1 8KD . . . F 3 46.383 60.325 80.599 1 38.05 ? C1 8KD 302 A 1 HETATM 13 C C2 8KD . . . F 3 45.388 61.48 80.899 1 41.07 ? C2 8KD 302 A 1 HETATM 14 C C3 8KD . . . F 3 45.664 62.495 79.752 1 42.25 ? C3 8KD 302 A 1 HETATM 15 C C4 8KD . . . F 3 45.398 61.9 78.359 1 41.08 ? C4 8KD 302 A 1 HETATM 16 C C5 8KD . . . F 3 46.333 60.707 78.125 1 41.17 ? C5 8KD 302 A 1 HETATM 17 C C6 8KD . . . F 3 46.125 59.669 79.234 1 38.27 ? C6 8KD 302 A 1 HETATM 18 C C7 8KD . . . F 3 47.849 60.779 80.616 1 38.56 ? C7 8KD 302 A 1 HETATM 19 C C8 8KD . . . F 3 47.785 61.182 78.162 1 40.86 ? C8 8KD 302 A 1 HETATM 20 C C9 8KD . . . F 3 48.072 61.823 79.518 1 41.38 ? C9 8KD 302 A 1 HETATM 21 C C10 8KD . . . F 3 47.115 63.001 79.747 1 41.78 ? C10 8KD 302 A 1 HETATM 22 C C14 8KD . . . F 3 42.823 61.632 81.493 1 41.93 ? C14 8KD 302 A 1 HETATM 23 N N16 8KD . . . F 3 44.562 62.085 84.525 1 35.06 ? N16 8KD 302 A 1 HETATM 24 O O17 8KD . . . F 3 45.262 60.17 83.597 1 36.79 ? O17 8KD 302 A 1 HETATM 25 O O25 8KD . . . F 3 43.485 63.792 87.016 1 34.68 ? O25 8KD 302 A 1 HETATM 26 O O26 8KD . . . F 3 48.05 62.086 77.1 1 41.65 ? O26 8KD 302 A 1 HETATM 27 H H44 8KD . . . F 3 42.412 60.033 82.875 0 41.77 ? H44 8KD 302 A 1 HETATM 28 H H45 8KD . . . F 3 40.687 61.242 84.088 0 41.85 ? H45 8KD 302 A 1 HETATM 29 H H46 8KD . . . F 3 40.006 63.541 83.354 0 42.62 ? H46 8KD 302 A 1 HETATM 30 H H47 8KD . . . F 3 41.165 64.594 81.458 0 42.53 ? H47 8KD 302 A 1 HETATM 31 H H48 8KD . . . F 3 42.903 63.389 80.238 0 41.83 ? H48 8KD 302 A 1 HETATM 32 H H50 8KD . . . F 3 43.383 63.753 83.793 0 34.64 ? H50 8KD 302 A 1 HETATM 33 H H49 8KD . . . F 3 44.735 64.219 84.788 0 34.64 ? H49 8KD 302 A 1 HETATM 34 H H51 8KD . . . F 3 42.167 62.732 85.775 0 33.77 ? H51 8KD 302 A 1 HETATM 35 H H52 8KD . . . F 3 44.989 61.706 86.606 0 34.77 ? H52 8KD 302 A 1 HETATM 36 H H53 8KD . . . F 3 43.665 60.742 85.989 0 34.77 ? H53 8KD 302 A 1 HETATM 37 H H40 8KD . . . F 3 43.953 59.881 81.167 0 42.51 ? H40 8KD 302 A 1 HETATM 38 H H41 8KD . . . F 3 43.629 60.76 79.758 0 42.51 ? H41 8KD 302 A 1 HETATM 39 H H42 8KD . . . F 3 45.166 63.104 82.266 0 39.54 ? H42 8KD 302 A 1 HETATM 40 H H43 8KD . . . F 3 46.688 62.356 82.48 0 39.54 ? H43 8KD 302 A 1 HETATM 41 H H27 8KD . . . F 3 46.273 59.554 81.356 0 38 ? H27 8KD 302 A 1 HETATM 42 H H28 8KD . . . F 3 45.019 63.36 79.889 0 42.24 ? H28 8KD 302 A 1 HETATM 43 H H29 8KD . . . F 3 44.36 61.634 78.166 0 41.1 ? H29 8KD 302 A 1 HETATM 44 H H30 8KD . . . F 3 45.583 62.671 77.612 0 41.1 ? H30 8KD 302 A 1 HETATM 45 H H31 8KD . . . F 3 46.111 60.25 77.161 0 41.13 ? H31 8KD 302 A 1 HETATM 46 H H33 8KD . . . F 3 46.833 58.855 79.087 0 38.24 ? H33 8KD 302 A 1 HETATM 47 H H32 8KD . . . F 3 45.154 59.183 79.156 0 38.24 ? H32 8KD 302 A 1 HETATM 48 H H34 8KD . . . F 3 48.17 61.156 81.584 0 38.53 ? H34 8KD 302 A 1 HETATM 49 H H35 8KD . . . F 3 48.499 59.92 80.451 0 38.53 ? H35 8KD 302 A 1 HETATM 50 H H36 8KD . . . F 3 48.447 60.326 78.042 0 40.9 ? H36 8KD 302 A 1 HETATM 51 H H37 8KD . . . F 3 49.101 62.178 79.54 0 41.37 ? H37 8KD 302 A 1 HETATM 52 H H39 8KD . . . F 3 47.236 63.749 78.965 0 41.83 ? H39 8KD 302 A 1 HETATM 53 H H38 8KD . . . F 3 47.374 63.543 80.655 0 41.83 ? H38 8KD 302 A 1 HETATM 54 H H54 8KD . . . F 3 42.596 64.104 87.33 0 34.69 ? H54 8KD 302 A 1 HETATM 55 H H55 8KD . . . F 3 48.223 61.535 76.293 0 41.59 ? H55 8KD 302 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 55 #