data_5PGX
#
_model_server_result.job_id            7V5KSGzXMLQF3ReitHTJzA 
_model_server_result.datetime_utc      '2024-12-22 01:06:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5pgx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    5PGX 
#
_exptl.entry_id    5PGX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              355.471 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(2-BENZYL-6-HYDROXYADAMANTAN-2-YL)-1-(3-HYDROXYAZETIDIN-1-YL)ETHAN-1-ONE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5PGX 
_cell.length_a            74.6 
_cell.length_b            93.3 
_cell.length_c            168.5 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5PGX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C22 H29 N O3' 
_chem_comp.formula_weight    355.471 
_chem_comp.id                8KD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(2-BENZYL-6-HYDROXYADAMANTAN-2-YL)-1-(3-HYDROXYAZETIDIN-1-YL)ETHAN-1-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O26 C8 8KD sing 1 n n 
C5 C8 8KD sing 2 n n 
C5 C4 8KD sing 3 n n 
C5 C6 8KD sing 4 n n 
C8 C9 8KD sing 5 n n 
C4 C3 8KD sing 6 n n 
C6 C1 8KD sing 7 n n 
C9 C10 8KD sing 8 n n 
C9 C7 8KD sing 9 n n 
C10 C3 8KD sing 10 n n 
C3 C2 8KD sing 11 n n 
C1 C7 8KD sing 12 n n 
C1 C2 8KD sing 13 n n 
C11 C2 8KD sing 14 n n 
C11 C14 8KD sing 15 n n 
C2 C12 8KD sing 16 n n 
C21 C14 8KD doub 17 n y 
C21 C20 8KD sing 18 n y 
C14 C13 8KD sing 19 n y 
C20 C19 8KD doub 20 n y 
C12 C15 8KD sing 21 n n 
C13 C18 8KD doub 22 n y 
C19 C18 8KD sing 23 n y 
C15 O17 8KD doub 24 n n 
C15 N16 8KD sing 25 n n 
N16 C22 8KD sing 26 n n 
N16 C24 8KD sing 27 n n 
C22 C23 8KD sing 28 n n 
C24 C23 8KD sing 29 n n 
C23 O25 8KD sing 30 n n 
C13 H44 8KD sing 31 n n 
C18 H45 8KD sing 32 n n 
C19 H46 8KD sing 33 n n 
C20 H47 8KD sing 34 n n 
C21 H48 8KD sing 35 n n 
C22 H50 8KD sing 36 n n 
C22 H49 8KD sing 37 n n 
C23 H51 8KD sing 38 n n 
C24 H52 8KD sing 39 n n 
C24 H53 8KD sing 40 n n 
C11 H40 8KD sing 41 n n 
C11 H41 8KD sing 42 n n 
C12 H42 8KD sing 43 n n 
C12 H43 8KD sing 44 n n 
C1 H27 8KD sing 45 n n 
C3 H28 8KD sing 46 n n 
C4 H29 8KD sing 47 n n 
C4 H30 8KD sing 48 n n 
C5 H31 8KD sing 49 n n 
C6 H33 8KD sing 50 n n 
C6 H32 8KD sing 51 n n 
C7 H34 8KD sing 52 n n 
C7 H35 8KD sing 53 n n 
C8 H36 8KD sing 54 n n 
C9 H37 8KD sing 55 n n 
C10 H39 8KD sing 56 n n 
C10 H38 8KD sing 57 n n 
O25 H54 8KD sing 58 n n 
O26 H55 8KD sing 59 n n 
#
_atom_sites.entry_id                     5PGX 
_atom_sites.fract_transf_matrix[1][1]    0.013405 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010718 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005935 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 301 301 NAP NAP . 
F 3 8KD A 1 302 302 8KD LG1 . 
G 2 NAP B 1 301 301 NAP NAP . 
H 3 8KD B 1 302 302 8KD LG1 . 
I 2 NAP D 1 301 301 NAP NAP . 
J 3 8KD D 1 302 302 8KD LG1 . 
K 2 NAP E 1 301 301 NAP NAP . 
L 3 8KD E 1 302 302 8KD LG1 . 
M 4 HOH A 1 401 9 HOH HOH . 
M 4 HOH A 2 402 3 HOH HOH . 
M 4 HOH A 3 403 30 HOH HOH . 
M 4 HOH A 4 404 8 HOH HOH . 
M 4 HOH A 5 405 5 HOH HOH . 
M 4 HOH A 6 406 18 HOH HOH . 
N 4 HOH B 1 401 35 HOH HOH . 
N 4 HOH B 2 402 19 HOH HOH . 
N 4 HOH B 3 403 14 HOH HOH . 
N 4 HOH B 4 404 31 HOH HOH . 
N 4 HOH B 5 405 11 HOH HOH . 
N 4 HOH B 6 406 23 HOH HOH . 
N 4 HOH B 7 407 2 HOH HOH . 
N 4 HOH B 8 408 10 HOH HOH . 
N 4 HOH B 9 409 24 HOH HOH . 
N 4 HOH B 10 410 33 HOH HOH . 
N 4 HOH B 11 411 32 HOH HOH . 
O 4 HOH D 1 401 7 HOH HOH . 
O 4 HOH D 2 402 4 HOH HOH . 
O 4 HOH D 3 403 37 HOH HOH . 
O 4 HOH D 4 404 16 HOH HOH . 
O 4 HOH D 5 405 12 HOH HOH . 
O 4 HOH D 6 406 1 HOH HOH . 
O 4 HOH D 7 407 13 HOH HOH . 
O 4 HOH D 8 408 6 HOH HOH . 
O 4 HOH D 9 409 29 HOH HOH . 
O 4 HOH D 10 410 15 HOH HOH . 
O 4 HOH D 11 411 22 HOH HOH . 
O 4 HOH D 12 412 28 HOH HOH . 
O 4 HOH D 13 413 17 HOH HOH . 
O 4 HOH D 14 414 36 HOH HOH . 
O 4 HOH D 15 415 25 HOH HOH . 
P 4 HOH E 1 401 39 HOH HOH . 
P 4 HOH E 2 402 20 HOH HOH . 
P 4 HOH E 3 403 21 HOH HOH . 
P 4 HOH E 4 404 38 HOH HOH . 
P 4 HOH E 5 405 34 HOH HOH . 
P 4 HOH E 6 406 27 HOH HOH . 
P 4 HOH E 7 407 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 8KD . . . J 3 31.314 49.466 129.404 1 30.49 ? C13 8KD 302 D 1 
HETATM 2 C C18 8KD . . . J 3 31.045 48.602 128.358 1 32.21 ? C18 8KD 302 D 1 
HETATM 3 C C15 8KD . . . J 3 34.353 50.444 129.985 1 27.48 ? C15 8KD 302 D 1 
HETATM 4 C C19 8KD . . . J 3 30.948 47.242 128.588 1 31.2 ? C19 8KD 302 D 1 
HETATM 5 C C20 8KD . . . J 3 31.135 46.75 129.863 1 27.87 ? C20 8KD 302 D 1 
HETATM 6 C C21 8KD . . . J 3 31.414 47.617 130.909 1 30.08 ? C21 8KD 302 D 1 
HETATM 7 C C22 8KD . . . J 3 34.473 48.254 128.608 1 31 ? C22 8KD 302 D 1 
HETATM 8 C C23 8KD . . . J 3 34.284 48.597 127.097 1 29.52 ? C23 8KD 302 D 1 
HETATM 9 C C24 8KD . . . J 3 34.587 50.062 127.456 1 30.09 ? C24 8KD 302 D 1 
HETATM 10 C C11 8KD . . . J 3 31.768 49.935 131.836 1 28.35 ? C11 8KD 302 D 1 
HETATM 11 C C12 8KD . . . J 3 34.325 49.731 131.32 1 29.69 ? C12 8KD 302 D 1 
HETATM 12 C C1 8KD . . . J 3 33.373 51.557 132.871 1 28.33 ? C1 8KD 302 D 1 
HETATM 13 C C2 8KD . . . J 3 33.225 50.09 132.38 1 28 ? C2 8KD 302 D 1 
HETATM 14 C C3 8KD . . . J 3 33.432 49.258 133.68 1 25.46 ? C3 8KD 302 D 1 
HETATM 15 C C4 8KD . . . J 3 32.396 49.588 134.77 1 26.23 ? C4 8KD 302 D 1 
HETATM 16 C C5 8KD . . . J 3 32.504 51.064 135.169 1 28.76 ? C5 8KD 302 D 1 
HETATM 17 C C6 8KD . . . J 3 32.315 51.934 133.923 1 29.5 ? C6 8KD 302 D 1 
HETATM 18 C C7 8KD . . . J 3 34.756 51.851 133.48 1 27.07 ? C7 8KD 302 D 1 
HETATM 19 C C8 8KD . . . J 3 33.888 51.343 135.755 1 30.04 ? C8 8KD 302 D 1 
HETATM 20 C C9 8KD . . . J 3 34.954 50.976 134.723 1 27.63 ? C9 8KD 302 D 1 
HETATM 21 C C10 8KD . . . J 3 34.806 49.498 134.327 1 23.6 ? C10 8KD 302 D 1 
HETATM 22 C C14 8KD . . . J 3 31.505 48.986 130.694 1 30.48 ? C14 8KD 302 D 1 
HETATM 23 N N16 8KD . . . J 3 34.467 49.694 128.867 1 29.75 ? N16 8KD 302 D 1 
HETATM 24 O O17 8KD . . . J 3 34.315 51.663 129.927 1 22.19 ? O17 8KD 302 D 1 
HETATM 25 O O25 8KD . . . J 3 35.343 48.024 126.342 1 29.87 ? O25 8KD 302 D 1 
HETATM 26 O O26 8KD . . . J 3 34.083 50.654 136.985 1 34.48 ? O26 8KD 302 D 1 
HETATM 27 H H44 8KD . . . J 3 31.379 50.535 129.2 0 30.37 ? H44 8KD 302 D 1 
HETATM 28 H H45 8KD . . . J 3 30.952 49.01 127.355 0 32.18 ? H45 8KD 302 D 1 
HETATM 29 H H46 8KD . . . J 3 30.728 46.56 127.768 0 31.16 ? H46 8KD 302 D 1 
HETATM 30 H H47 8KD . . . J 3 31.063 45.68 130.053 0 27.86 ? H47 8KD 302 D 1 
HETATM 31 H H48 8KD . . . J 3 31.578 47.203 131.903 0 30.08 ? H48 8KD 302 D 1 
HETATM 32 H H50 8KD . . . J 3 33.674 47.681 129.073 0 31.03 ? H50 8KD 302 D 1 
HETATM 33 H H49 8KD . . . J 3 35.399 47.749 128.875 0 31.03 ? H49 8KD 302 D 1 
HETATM 34 H H51 8KD . . . J 3 33.308 48.394 126.659 0 29.56 ? H51 8KD 302 D 1 
HETATM 35 H H52 8KD . . . J 3 35.57 50.43 127.167 0 30.1 ? H52 8KD 302 D 1 
HETATM 36 H H53 8KD . . . J 3 33.856 50.774 127.078 0 30.1 ? H53 8KD 302 D 1 
HETATM 37 H H40 8KD . . . J 3 31.411 50.906 131.497 0 28.29 ? H40 8KD 302 D 1 
HETATM 38 H H41 8KD . . . J 3 31.057 49.688 132.62 0 28.29 ? H41 8KD 302 D 1 
HETATM 39 H H42 8KD . . . J 3 34.243 48.657 131.167 0 29.64 ? H42 8KD 302 D 1 
HETATM 40 H H43 8KD . . . J 3 35.332 49.845 131.716 0 29.64 ? H43 8KD 302 D 1 
HETATM 41 H H27 8KD . . . J 3 33.224 52.222 132.027 0 28.32 ? H27 8KD 302 D 1 
HETATM 42 H H28 8KD . . . J 3 33.342 48.203 133.427 0 25.42 ? H28 8KD 302 D 1 
HETATM 43 H H29 8KD . . . J 3 31.371 49.329 134.514 0 26.23 ? H29 8KD 302 D 1 
HETATM 44 H H30 8KD . . . J 3 32.585 48.958 135.638 0 26.23 ? H30 8KD 302 D 1 
HETATM 45 H H31 8KD . . . J 3 31.729 51.299 135.897 0 28.69 ? H31 8KD 302 D 1 
HETATM 46 H H33 8KD . . . J 3 32.433 52.979 134.203 0 29.53 ? H33 8KD 302 D 1 
HETATM 47 H H32 8KD . . . J 3 31.29 51.878 133.56 0 29.53 ? H32 8KD 302 D 1 
HETATM 48 H H34 8KD . . . J 3 35.573 51.73 132.772 0 27.05 ? H34 8KD 302 D 1 
HETATM 49 H H35 8KD . . . J 3 34.815 52.903 133.754 0 27.05 ? H35 8KD 302 D 1 
HETATM 50 H H36 8KD . . . J 3 33.976 52.409 135.963 0 30.07 ? H36 8KD 302 D 1 
HETATM 51 H H37 8KD . . . J 3 35.942 51.144 135.148 0 27.58 ? H37 8KD 302 D 1 
HETATM 52 H H39 8KD . . . J 3 34.87 48.879 135.219 0 23.58 ? H39 8KD 302 D 1 
HETATM 53 H H38 8KD . . . J 3 35.641 49.155 133.72 0 23.58 ? H38 8KD 302 D 1 
HETATM 54 H H54 8KD . . . J 3 34.912 47.452 125.655 0 29.89 ? H54 8KD 302 D 1 
HETATM 55 H H55 8KD . . . J 3 33.406 51.006 137.62 0 34.51 ? H55 8KD 302 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           55 
#