data_5PGZ
#
_model_server_result.job_id            HCeQI0mH58408jtfJCKJBg 
_model_server_result.datetime_utc      '2024-12-22 07:17:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5pgz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    5PGZ 
#
_exptl.entry_id    5PGZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5PGZ 
_cell.length_a            96.6 
_cell.length_b            96.6 
_cell.length_c            217.4 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5PGZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 293 n n 
PA O2A NAP sing 294 n n 
PA O5B NAP sing 295 n n 
PA O3 NAP sing 296 n n 
O2A HOA2 NAP sing 297 n n 
O5B C5B NAP sing 298 n n 
C5B C4B NAP sing 299 n n 
C5B H51A NAP sing 300 n n 
C5B H52A NAP sing 301 n n 
C4B O4B NAP sing 302 n n 
C4B C3B NAP sing 303 n n 
C4B H4B NAP sing 304 n n 
O4B C1B NAP sing 305 n n 
C3B O3B NAP sing 306 n n 
C3B C2B NAP sing 307 n n 
C3B H3B NAP sing 308 n n 
O3B HO3A NAP sing 309 n n 
C2B O2B NAP sing 310 n n 
C2B C1B NAP sing 311 n n 
C2B H2B NAP sing 312 n n 
O2B P2B NAP sing 313 n n 
C1B N9A NAP sing 314 n n 
C1B H1B NAP sing 315 n n 
N9A C8A NAP sing 316 n y 
N9A C4A NAP sing 317 n y 
C8A N7A NAP doub 318 n y 
C8A H8A NAP sing 319 n n 
N7A C5A NAP sing 320 n y 
C5A C6A NAP sing 321 n y 
C5A C4A NAP doub 322 n y 
C6A N6A NAP sing 323 n n 
C6A N1A NAP doub 324 n y 
N6A H61A NAP sing 325 n n 
N6A H62A NAP sing 326 n n 
N1A C2A NAP sing 327 n y 
C2A N3A NAP doub 328 n y 
C2A H2A NAP sing 329 n n 
N3A C4A NAP sing 330 n y 
O3 PN NAP sing 331 n n 
PN O1N NAP doub 332 n n 
PN O2N NAP sing 333 n n 
PN O5D NAP sing 334 n n 
O5D C5D NAP sing 335 n n 
C5D C4D NAP sing 336 n n 
C5D H51N NAP sing 337 n n 
C5D H52N NAP sing 338 n n 
C4D O4D NAP sing 339 n n 
C4D C3D NAP sing 340 n n 
C4D H4D NAP sing 341 n n 
O4D C1D NAP sing 342 n n 
C3D O3D NAP sing 343 n n 
C3D C2D NAP sing 344 n n 
C3D H3D NAP sing 345 n n 
O3D HO3N NAP sing 346 n n 
C2D O2D NAP sing 347 n n 
C2D C1D NAP sing 348 n n 
C2D H2D NAP sing 349 n n 
O2D HO2N NAP sing 350 n n 
C1D N1N NAP sing 351 n n 
C1D H1D NAP sing 352 n n 
N1N C2N NAP sing 353 n y 
N1N C6N NAP doub 354 n y 
C2N C3N NAP doub 355 n y 
C2N H2N NAP sing 356 n n 
C3N C7N NAP sing 357 n n 
C3N C4N NAP sing 358 n y 
C7N O7N NAP doub 359 n n 
C7N N7N NAP sing 360 n n 
N7N H71N NAP sing 361 n n 
N7N H72N NAP sing 362 n n 
C4N C5N NAP doub 363 n y 
C4N H4N NAP sing 364 n n 
C5N C6N NAP sing 365 n y 
C5N H5N NAP sing 366 n n 
C6N H6N NAP sing 367 n n 
P2B O1X NAP doub 368 n n 
P2B O2X NAP sing 369 n n 
P2B O3X NAP sing 370 n n 
O2X HOP2 NAP sing 371 n n 
O3X HOP3 NAP sing 372 n n 
#
_atom_sites.entry_id                     5PGZ 
_atom_sites.fract_transf_matrix[1][1]    0.010352 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010352 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0046 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 301 301 NAP NAP . 
D 3 8KG A 1 302 302 8KG LG1 . 
E 4 SO4 A 1 303 1 SO4 SO4 . 
F 4 SO4 A 1 304 3 SO4 SO4 . 
G 4 SO4 A 1 305 5 SO4 SO4 . 
H 2 NAP B 1 301 301 NAP NAP . 
I 3 8KG B 1 302 302 8KG LG1 . 
J 4 SO4 B 1 303 2 SO4 SO4 . 
K 4 SO4 B 1 304 4 SO4 SO4 . 
L 5 HOH A 1 401 13 HOH HOH . 
L 5 HOH A 2 402 15 HOH HOH . 
L 5 HOH A 3 403 27 HOH HOH . 
L 5 HOH A 4 404 10 HOH HOH . 
L 5 HOH A 5 405 18 HOH HOH . 
L 5 HOH A 6 406 5 HOH HOH . 
L 5 HOH A 7 407 11 HOH HOH . 
L 5 HOH A 8 408 12 HOH HOH . 
L 5 HOH A 9 409 17 HOH HOH . 
L 5 HOH A 10 410 21 HOH HOH . 
L 5 HOH A 11 411 4 HOH HOH . 
L 5 HOH A 12 412 16 HOH HOH . 
L 5 HOH A 13 413 26 HOH HOH . 
L 5 HOH A 14 414 14 HOH HOH . 
M 5 HOH B 1 401 19 HOH HOH . 
M 5 HOH B 2 402 30 HOH HOH . 
M 5 HOH B 3 403 28 HOH HOH . 
M 5 HOH B 4 404 29 HOH HOH . 
M 5 HOH B 5 405 2 HOH HOH . 
M 5 HOH B 6 406 9 HOH HOH . 
M 5 HOH B 7 407 23 HOH HOH . 
M 5 HOH B 8 408 24 HOH HOH . 
M 5 HOH B 9 409 6 HOH HOH . 
M 5 HOH B 10 410 7 HOH HOH . 
M 5 HOH B 11 411 22 HOH HOH . 
M 5 HOH B 12 412 1 HOH HOH . 
M 5 HOH B 13 413 8 HOH HOH . 
M 5 HOH B 14 414 3 HOH HOH . 
M 5 HOH B 15 415 25 HOH HOH . 
M 5 HOH B 16 416 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . H 2 63.436 68.385 13.233 1 76.73 ? PA NAP 301 B 1 
HETATM 2 O O1A NAP . . . H 2 62.51 68.88 12.183 1 77.46 ? O1A NAP 301 B 1 
HETATM 3 O O2A NAP . . . H 2 64.873 68.106 12.752 1 74.91 ? O2A NAP 301 B 1 
HETATM 4 O O5B NAP . . . H 2 63.568 69.437 14.434 1 78.85 ? O5B NAP 301 B 1 
HETATM 5 C C5B NAP . . . H 2 64.768 69.654 15.216 1 80 ? C5B NAP 301 B 1 
HETATM 6 C C4B NAP . . . H 2 64.643 70.994 15.893 1 80.05 ? C4B NAP 301 B 1 
HETATM 7 O O4B NAP . . . H 2 65.761 71.202 16.791 1 79.08 ? O4B NAP 301 B 1 
HETATM 8 C C3B NAP . . . H 2 64.625 72.194 14.947 1 80.13 ? C3B NAP 301 B 1 
HETATM 9 O O3B NAP . . . H 2 63.769 73.232 15.407 1 79.86 ? O3B NAP 301 B 1 
HETATM 10 C C2B NAP . . . H 2 66.079 72.646 14.973 1 79.93 ? C2B NAP 301 B 1 
HETATM 11 O O2B NAP . . . H 2 66.226 74.029 14.588 1 82.5 ? O2B NAP 301 B 1 
HETATM 12 C C1B NAP . . . H 2 66.468 72.372 16.424 1 76.62 ? C1B NAP 301 B 1 
HETATM 13 N N9A NAP . . . H 2 67.895 72.137 16.636 1 71.6 ? N9A NAP 301 B 1 
HETATM 14 C C8A NAP . . . H 2 68.729 71.383 15.849 1 71.17 ? C8A NAP 301 B 1 
HETATM 15 N N7A NAP . . . H 2 69.987 71.417 16.216 1 69.89 ? N7A NAP 301 B 1 
HETATM 16 C C5A NAP . . . H 2 69.983 72.246 17.327 1 68.32 ? C5A NAP 301 B 1 
HETATM 17 C C6A NAP . . . H 2 71.017 72.724 18.159 1 66.06 ? C6A NAP 301 B 1 
HETATM 18 N N6A NAP . . . H 2 72.312 72.47 17.951 1 64.22 ? N6A NAP 301 B 1 
HETATM 19 N N1A NAP . . . H 2 70.672 73.544 19.178 1 65.6 ? N1A NAP 301 B 1 
HETATM 20 C C2A NAP . . . H 2 69.386 73.88 19.33 1 65.38 ? C2A NAP 301 B 1 
HETATM 21 N N3A NAP . . . H 2 68.328 73.497 18.607 1 66.42 ? N3A NAP 301 B 1 
HETATM 22 C C4A NAP . . . H 2 68.697 72.684 17.607 1 68.2 ? C4A NAP 301 B 1 
HETATM 23 O O3 NAP . . . H 2 62.956 67.077 14.019 1 76.1 ? O3 NAP 301 B 1 
HETATM 24 P PN NAP . . . H 2 61.529 66.681 14.625 1 75.17 ? PN NAP 301 B 1 
HETATM 25 O O1N NAP . . . H 2 60.913 65.704 13.702 1 74.7 ? O1N NAP 301 B 1 
HETATM 26 O O2N NAP . . . H 2 60.787 67.914 14.977 1 74.58 ? O2N NAP 301 B 1 
HETATM 27 O O5D NAP . . . H 2 61.97 65.878 15.933 1 75.19 ? O5D NAP 301 B 1 
HETATM 28 C C5D NAP . . . H 2 61.59 66.33 17.251 1 75.42 ? C5D NAP 301 B 1 
HETATM 29 C C4D NAP . . . H 2 61.835 65.25 18.283 1 76.24 ? C4D NAP 301 B 1 
HETATM 30 O O4D NAP . . . H 2 61.093 64.056 17.938 1 77.6 ? O4D NAP 301 B 1 
HETATM 31 C C3D NAP . . . H 2 63.278 64.793 18.474 1 74.51 ? C3D NAP 301 B 1 
HETATM 32 O O3D NAP . . . H 2 63.616 64.703 19.857 1 71.52 ? O3D NAP 301 B 1 
HETATM 33 C C2D NAP . . . H 2 63.282 63.431 17.78 1 76.15 ? C2D NAP 301 B 1 
HETATM 34 O O2D NAP . . . H 2 64.186 62.542 18.421 1 77.75 ? O2D NAP 301 B 1 
HETATM 35 C C1D NAP . . . H 2 61.859 62.89 18.088 1 76.37 ? C1D NAP 301 B 1 
HETATM 36 N N1N NAP . . . H 2 61.367 61.87 17.043 1 74.73 ? N1N NAP 301 B 1 
HETATM 37 C C2N NAP . . . H 2 61.221 62.277 15.704 1 75.71 ? C2N NAP 301 B 1 
HETATM 38 C C3N NAP . . . H 2 60.772 61.387 14.743 1 75.79 ? C3N NAP 301 B 1 
HETATM 39 C C7N NAP . . . H 2 60.509 61.793 13.312 1 76.93 ? C7N NAP 301 B 1 
HETATM 40 O O7N NAP . . . H 2 60.159 60.935 12.49 1 77.63 ? O7N NAP 301 B 1 
HETATM 41 N N7N NAP . . . H 2 60.676 63.08 12.974 1 76.97 ? N7N NAP 301 B 1 
HETATM 42 C C4N NAP . . . H 2 60.5 60.077 15.126 1 73.98 ? C4N NAP 301 B 1 
HETATM 43 C C5N NAP . . . H 2 60.639 59.69 16.45 1 72.68 ? C5N NAP 301 B 1 
HETATM 44 C C6N NAP . . . H 2 61.069 60.607 17.4 1 72.98 ? C6N NAP 301 B 1 
HETATM 45 P P2B NAP . . . H 2 67.592 74.635 14.02 1 84.11 ? P2B NAP 301 B 1 
HETATM 46 O O1X NAP . . . H 2 68.538 74.77 15.12 1 83.61 ? O1X NAP 301 B 1 
HETATM 47 O O2X NAP . . . H 2 68.091 73.714 12.878 1 84.61 ? O2X NAP 301 B 1 
HETATM 48 O O3X NAP . . . H 2 67.159 75.977 13.419 1 84.82 ? O3X NAP 301 B 1 
HETATM 49 H HOA2 NAP . . . H 2 65.63 67.632 13.187 0 74.96 ? HOA2 NAP 301 B 1 
HETATM 50 H H51A NAP . . . H 2 64.766 68.854 15.956 0 80.05 ? H51A NAP 301 B 1 
HETATM 51 H H52A NAP . . . H 2 65.684 69.569 14.633 0 80.05 ? H52A NAP 301 B 1 
HETATM 52 H H4B NAP . . . H 2 63.781 70.978 16.556 0 80.06 ? H4B NAP 301 B 1 
HETATM 53 H H3B NAP . . . H 2 64.331 71.878 13.948 0 80.11 ? H3B NAP 301 B 1 
HETATM 54 H HO3A NAP . . . H 2 62.849 72.97 15.14 0 79.85 ? HO3A NAP 301 B 1 
HETATM 55 H H2B NAP . . . H 2 66.616 72.023 14.26 0 79.91 ? H2B NAP 301 B 1 
HETATM 56 H H1B NAP . . . H 2 66.163 73.166 17.103 0 76.57 ? H1B NAP 301 B 1 
HETATM 57 H H8A NAP . . . H 2 68.385 70.798 14.998 0 71.15 ? H8A NAP 301 B 1 
HETATM 58 H H61A NAP . . . H 2 72.61 71.907 17.16 0 64.22 ? H61A NAP 301 B 1 
HETATM 59 H H62A NAP . . . H 2 73.033 72.827 18.57 0 64.22 ? H62A NAP 301 B 1 
HETATM 60 H H2A NAP . . . H 2 69.165 74.591 20.123 0 65.32 ? H2A NAP 301 B 1 
HETATM 61 H H51N NAP . . . H 2 60.564 66.69 17.311 0 75.45 ? H51N NAP 301 B 1 
HETATM 62 H H52N NAP . . . H 2 62.223 67.199 17.421 0 75.45 ? H52N NAP 301 B 1 
HETATM 63 H H4D NAP . . . H 2 61.421 65.592 19.229 0 76.27 ? H4D NAP 301 B 1 
HETATM 64 H H3D NAP . . . H 2 63.993 65.439 17.967 0 74.49 ? H3D NAP 301 B 1 
HETATM 65 H HO3N NAP . . . H 2 63.138 63.921 20.24 0 71.53 ? HO3N NAP 301 B 1 
HETATM 66 H H2D NAP . . . H 2 63.506 63.494 16.716 0 76.09 ? H2D NAP 301 B 1 
HETATM 67 H HO2N NAP . . . H 2 65.107 62.746 18.11 0 77.73 ? HO2N NAP 301 B 1 
HETATM 68 H H1D NAP . . . H 2 61.703 62.45 19.071 0 76.34 ? H1D NAP 301 B 1 
HETATM 69 H H2N NAP . . . H 2 61.502 63.301 15.464 0 75.65 ? H2N NAP 301 B 1 
HETATM 70 H H71N NAP . . . H 2 60.494 63.378 12.022 0 76.92 ? H71N NAP 301 B 1 
HETATM 71 H H72N NAP . . . H 2 60.965 63.832 13.589 0 76.92 ? H72N NAP 301 B 1 
HETATM 72 H H4N NAP . . . H 2 60.222 59.315 14.399 0 73.96 ? H4N NAP 301 B 1 
HETATM 73 H H5N NAP . . . H 2 60.417 58.669 16.755 0 72.7 ? H5N NAP 301 B 1 
HETATM 74 H H6N NAP . . . H 2 61.152 60.313 18.444 0 72.99 ? H6N NAP 301 B 1 
HETATM 75 H HOP2 NAP . . . H 2 67.584 73.725 12.024 0 84.51 ? HOP2 NAP 301 B 1 
HETATM 76 H HOP3 NAP . . . H 2 66.478 76.078 12.703 0 84.72 ? HOP3 NAP 301 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           552 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           76 
#