data_5PGZ
#
_model_server_result.job_id            wXNDhkqSBSkRrvpjnIfqKg 
_model_server_result.datetime_utc      '2024-12-22 07:05:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5pgz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    5PGZ 
#
_exptl.entry_id    5PGZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              341.444 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[(5R,7S)-6-HYDROXY-2-PHENYLADAMANTAN-2-YL]-1-(3-HYDROXYAZETIDIN-1-YL)ETHAN-1-ONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5PGZ 
_cell.length_a            96.6 
_cell.length_b            96.6 
_cell.length_c            217.4 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5PGZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
_chem_comp.formula           'C21 H27 N O3' 
_chem_comp.formula_weight    341.444 
_chem_comp.id                8KG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[(5R,7S)-6-HYDROXY-2-PHENYLADAMANTAN-2-YL]-1-(3-HYDROXYAZETIDIN-1-YL)ETHAN-1-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C8 8KG sing 1 n n 
C8 C5 8KG sing 2 n n 
C8 C9 8KG sing 3 n n 
C5 C6 8KG sing 4 n n 
C5 C4 8KG sing 5 n n 
C6 C1 8KG sing 6 n n 
C4 C3 8KG sing 7 n n 
C9 C7 8KG sing 8 n n 
C9 C10 8KG sing 9 n n 
C7 C1 8KG sing 10 n n 
C1 C2 8KG sing 11 n n 
C10 C3 8KG sing 12 n n 
C3 C2 8KG sing 13 n n 
C2 C11 8KG sing 14 n n 
C2 C12 8KG sing 15 n n 
C13 C11 8KG doub 16 n y 
C13 C14 8KG sing 17 n y 
C11 C17 8KG sing 18 n y 
C14 C15 8KG doub 19 n y 
C17 C16 8KG doub 20 n y 
C15 C16 8KG sing 21 n y 
C12 C18 8KG sing 22 n n 
C18 O20 8KG doub 23 n n 
C18 N19 8KG sing 24 n n 
N19 C22 8KG sing 25 n n 
N19 C24 8KG sing 26 n n 
C22 C23 8KG sing 27 n n 
C24 C23 8KG sing 28 n n 
C23 O25 8KG sing 29 n n 
C13 H41 8KG sing 30 n n 
C17 H45 8KG sing 31 n n 
C16 H44 8KG sing 32 n n 
C15 H43 8KG sing 33 n n 
C22 H48 8KG sing 34 n n 
C22 H47 8KG sing 35 n n 
C23 H49 8KG sing 36 n n 
C24 H50 8KG sing 37 n n 
C24 H51 8KG sing 38 n n 
C12 H39 8KG sing 39 n n 
C12 H40 8KG sing 40 n n 
C1 H26 8KG sing 41 n n 
C3 H27 8KG sing 42 n n 
C4 H28 8KG sing 43 n n 
C4 H29 8KG sing 44 n n 
C5 H30 8KG sing 45 n n 
C6 H32 8KG sing 46 n n 
C6 H31 8KG sing 47 n n 
C7 H33 8KG sing 48 n n 
C7 H34 8KG sing 49 n n 
C8 H35 8KG sing 50 n n 
C9 H36 8KG sing 51 n n 
C10 H38 8KG sing 52 n n 
C10 H37 8KG sing 53 n n 
C14 H42 8KG sing 54 n n 
O21 H46 8KG sing 55 n n 
O25 H52 8KG sing 56 n n 
#
_atom_sites.entry_id                     5PGZ 
_atom_sites.fract_transf_matrix[1][1]    0.010352 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010352 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0046 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 301 301 NAP NAP . 
D 3 8KG A 1 302 302 8KG LG1 . 
E 4 SO4 A 1 303 1 SO4 SO4 . 
F 4 SO4 A 1 304 3 SO4 SO4 . 
G 4 SO4 A 1 305 5 SO4 SO4 . 
H 2 NAP B 1 301 301 NAP NAP . 
I 3 8KG B 1 302 302 8KG LG1 . 
J 4 SO4 B 1 303 2 SO4 SO4 . 
K 4 SO4 B 1 304 4 SO4 SO4 . 
L 5 HOH A 1 401 13 HOH HOH . 
L 5 HOH A 2 402 15 HOH HOH . 
L 5 HOH A 3 403 27 HOH HOH . 
L 5 HOH A 4 404 10 HOH HOH . 
L 5 HOH A 5 405 18 HOH HOH . 
L 5 HOH A 6 406 5 HOH HOH . 
L 5 HOH A 7 407 11 HOH HOH . 
L 5 HOH A 8 408 12 HOH HOH . 
L 5 HOH A 9 409 17 HOH HOH . 
L 5 HOH A 10 410 21 HOH HOH . 
L 5 HOH A 11 411 4 HOH HOH . 
L 5 HOH A 12 412 16 HOH HOH . 
L 5 HOH A 13 413 26 HOH HOH . 
L 5 HOH A 14 414 14 HOH HOH . 
M 5 HOH B 1 401 19 HOH HOH . 
M 5 HOH B 2 402 30 HOH HOH . 
M 5 HOH B 3 403 28 HOH HOH . 
M 5 HOH B 4 404 29 HOH HOH . 
M 5 HOH B 5 405 2 HOH HOH . 
M 5 HOH B 6 406 9 HOH HOH . 
M 5 HOH B 7 407 23 HOH HOH . 
M 5 HOH B 8 408 24 HOH HOH . 
M 5 HOH B 9 409 6 HOH HOH . 
M 5 HOH B 10 410 7 HOH HOH . 
M 5 HOH B 11 411 22 HOH HOH . 
M 5 HOH B 12 412 1 HOH HOH . 
M 5 HOH B 13 413 8 HOH HOH . 
M 5 HOH B 14 414 3 HOH HOH . 
M 5 HOH B 15 415 25 HOH HOH . 
M 5 HOH B 16 416 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 8KG . . . D 3 74.412 49.887 44.281 1 41.79 ? C13 8KG 302 A 1 
HETATM 2 C C18 8KG . . . D 3 75.043 48.53 40.853 1 42.75 ? C18 8KG 302 A 1 
HETATM 3 C C17 8KG . . . D 3 73.828 51.205 42.377 1 41.32 ? C17 8KG 302 A 1 
HETATM 4 C C16 8KG . . . D 3 72.537 51.327 42.862 1 40.33 ? C16 8KG 302 A 1 
HETATM 5 C C15 8KG . . . D 3 72.178 50.72 44.044 1 40.38 ? C15 8KG 302 A 1 
HETATM 6 C C22 8KG . . . D 3 73.311 47.216 42.288 1 41.49 ? C22 8KG 302 A 1 
HETATM 7 C C23 8KG . . . D 3 71.935 47.361 41.618 1 41.03 ? C23 8KG 302 A 1 
HETATM 8 C C24 8KG . . . D 3 72.669 47.778 40.319 1 41.87 ? C24 8KG 302 A 1 
HETATM 9 C C11 8KG . . . D 3 74.791 50.477 43.075 1 42.67 ? C11 8KG 302 A 1 
HETATM 10 C C12 8KG . . . D 3 76.046 48.732 41.965 1 41.73 ? C12 8KG 302 A 1 
HETATM 11 C C1 8KG . . . D 3 77.342 50.325 43.534 1 45.51 ? C1 8KG 302 A 1 
HETATM 12 C C2 8KG . . . D 3 76.208 50.199 42.472 1 43.88 ? C2 8KG 302 A 1 
HETATM 13 C C3 8KG . . . D 3 76.6 51.17 41.318 1 45.04 ? C3 8KG 302 A 1 
HETATM 14 C C4 8KG . . . D 3 76.709 52.617 41.828 1 44.73 ? C4 8KG 302 A 1 
HETATM 15 C C5 8KG . . . D 3 77.799 52.717 42.893 1 46.51 ? C5 8KG 302 A 1 
HETATM 16 C C6 8KG . . . D 3 77.453 51.767 44.044 1 46.39 ? C6 8KG 302 A 1 
HETATM 17 C C7 8KG . . . D 3 78.705 49.943 42.934 1 47.12 ? C7 8KG 302 A 1 
HETATM 18 C C8 8KG . . . D 3 79.136 52.313 42.275 1 48.74 ? C8 8KG 302 A 1 
HETATM 19 C C9 8KG . . . D 3 79.051 50.873 41.77 1 48.2 ? C9 8KG 302 A 1 
HETATM 20 C C10 8KG . . . D 3 77.952 50.775 40.71 1 47 ? C10 8KG 302 A 1 
HETATM 21 C C14 8KG . . . D 3 73.112 49.993 44.747 1 40.53 ? C14 8KG 302 A 1 
HETATM 22 N N19 8KG . . . D 3 73.878 47.909 41.13 1 42.06 ? N19 8KG 302 A 1 
HETATM 23 O O20 8KG . . . D 3 75.321 48.882 39.719 1 43.78 ? O20 8KG 302 A 1 
HETATM 24 O O21 8KG . . . D 3 80.199 52.473 43.21 1 49.92 ? O21 8KG 302 A 1 
HETATM 25 O O25 8KG . . . D 3 71.302 46.109 41.379 1 41.72 ? O25 8KG 302 A 1 
HETATM 26 H H41 8KG . . . D 3 75.12 49.31 44.871 0 41.79 ? H41 8KG 302 A 1 
HETATM 27 H H45 8KG . . . D 3 74.032 51.689 41.424 0 41.3 ? H45 8KG 302 A 1 
HETATM 28 H H44 8KG . . . D 3 71.803 51.901 42.299 0 40.26 ? H44 8KG 302 A 1 
HETATM 29 H H43 8KG . . . D 3 71.171 50.836 44.439 0 40.34 ? H43 8KG 302 A 1 
HETATM 30 H H48 8KG . . . D 3 73.419 47.694 43.258 0 41.46 ? H48 8KG 302 A 1 
HETATM 31 H H47 8KG . . . D 3 73.676 46.198 42.412 0 41.46 ? H47 8KG 302 A 1 
HETATM 32 H H49 8KG . . . D 3 71.251 48.09 42.051 0 40.93 ? H49 8KG 302 A 1 
HETATM 33 H H50 8KG . . . D 3 72.719 47.022 39.537 0 41.86 ? H50 8KG 302 A 1 
HETATM 34 H H51 8KG . . . D 3 72.307 48.694 39.855 0 41.86 ? H51 8KG 302 A 1 
HETATM 35 H H39 8KG . . . D 3 75.786 48.064 42.784 0 41.67 ? H39 8KG 302 A 1 
HETATM 36 H H40 8KG . . . D 3 77.015 48.351 41.657 0 41.67 ? H40 8KG 302 A 1 
HETATM 37 H H26 8KG . . . D 3 77.173 49.672 44.388 0 45.5 ? H26 8KG 302 A 1 
HETATM 38 H H27 8KG . . . D 3 75.866 51.155 40.515 0 45.02 ? H27 8KG 302 A 1 
HETATM 39 H H28 8KG . . . D 3 76.946 53.274 40.992 0 44.72 ? H28 8KG 302 A 1 
HETATM 40 H H29 8KG . . . D 3 75.774 53.018 42.217 0 44.72 ? H29 8KG 302 A 1 
HETATM 41 H H30 8KG . . . D 3 77.844 53.74 43.261 0 46.48 ? H30 8KG 302 A 1 
HETATM 42 H H32 8KG . . . D 3 76.538 52.079 44.541 0 46.4 ? H32 8KG 302 A 1 
HETATM 43 H H31 8KG . . . D 3 78.217 51.813 44.818 0 46.4 ? H31 8KG 302 A 1 
HETATM 44 H H33 8KG . . . D 3 79.47 50.044 43.701 0 47.13 ? H33 8KG 302 A 1 
HETATM 45 H H34 8KG . . . D 3 78.773 48.895 42.65 0 47.13 ? H34 8KG 302 A 1 
HETATM 46 H H35 8KG . . . D 3 79.346 52.956 41.422 0 48.71 ? H35 8KG 302 A 1 
HETATM 47 H H36 8KG . . . D 3 80.008 50.583 41.342 0 48.19 ? H36 8KG 302 A 1 
HETATM 48 H H38 8KG . . . D 3 77.931 49.797 40.234 0 46.99 ? H38 8KG 302 A 1 
HETATM 49 H H37 8KG . . . D 3 78.197 51.454 39.897 0 46.99 ? H37 8KG 302 A 1 
HETATM 50 H H42 8KG . . . D 3 72.815 49.468 45.653 0 40.47 ? H42 8KG 302 A 1 
HETATM 51 H H46 8KG . . . D 3 80.424 53.44 43.225 0 49.94 ? H46 8KG 302 A 1 
HETATM 52 H H52 8KG . . . D 3 70.415 46.159 41.822 0 41.74 ? H52 8KG 302 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           52 
#