data_5PNY # _model_server_result.job_id fGs4lKRX1nC3Gfk_APQdjw _model_server_result.datetime_utc '2024-11-04 18:56:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5pny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5PNY # _exptl.entry_id 5PNY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5PNY _cell.length_a 55.418 _cell.length_b 56.369 _cell.length_c 101.981 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I 1 1 B,E,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 108 A LYS 108 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc2 I O HOH . A HOH 344 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc3 I O HOH . A HOH 371 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc4 B O MET 107 B MET 107 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc5 B O ASN 110 B ASN 110 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5PNY _atom_sites.fract_transf_matrix[1][1] 0.018045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 201 1 EDO EDO . D 2 EDO A 1 202 2 EDO EDO . E 3 NA B 1 201 1 NA NA . F 2 EDO B 1 202 3 EDO EDO . G 2 EDO B 1 203 4 EDO EDO . H 4 8S1 B 1 204 1 8S1 LIG . I 5 HOH A 1 301 265 HOH HOH . I 5 HOH A 2 302 240 HOH HOH . I 5 HOH A 3 303 264 HOH HOH . I 5 HOH A 4 304 100 HOH HOH . I 5 HOH A 5 305 191 HOH HOH . I 5 HOH A 6 306 224 HOH HOH . I 5 HOH A 7 307 245 HOH HOH . I 5 HOH A 8 308 215 HOH HOH . I 5 HOH A 9 309 243 HOH HOH . I 5 HOH A 10 310 35 HOH HOH . I 5 HOH A 11 311 244 HOH HOH . I 5 HOH A 12 312 250 HOH HOH . I 5 HOH A 13 313 233 HOH HOH . I 5 HOH A 14 314 180 HOH HOH . I 5 HOH A 15 315 115 HOH HOH . I 5 HOH A 16 316 216 HOH HOH . I 5 HOH A 17 317 172 HOH HOH . I 5 HOH A 18 318 38 HOH HOH . I 5 HOH A 19 319 104 HOH HOH . I 5 HOH A 20 320 13 HOH HOH . I 5 HOH A 21 321 201 HOH HOH . I 5 HOH A 22 322 161 HOH HOH . I 5 HOH A 23 323 210 HOH HOH . I 5 HOH A 24 324 75 HOH HOH . I 5 HOH A 25 325 93 HOH HOH . I 5 HOH A 26 326 219 HOH HOH . I 5 HOH A 27 327 57 HOH HOH . I 5 HOH A 28 328 40 HOH HOH . I 5 HOH A 29 329 102 HOH HOH . I 5 HOH A 30 330 121 HOH HOH . I 5 HOH A 31 331 139 HOH HOH . I 5 HOH A 32 332 55 HOH HOH . I 5 HOH A 33 333 151 HOH HOH . I 5 HOH A 34 334 45 HOH HOH . I 5 HOH A 35 335 203 HOH HOH . I 5 HOH A 36 336 29 HOH HOH . I 5 HOH A 37 337 108 HOH HOH . I 5 HOH A 38 338 145 HOH HOH . I 5 HOH A 39 339 14 HOH HOH . I 5 HOH A 40 340 44 HOH HOH . I 5 HOH A 41 341 116 HOH HOH . I 5 HOH A 42 342 166 HOH HOH . I 5 HOH A 43 343 56 HOH HOH . I 5 HOH A 44 344 218 HOH HOH . I 5 HOH A 45 345 86 HOH HOH . I 5 HOH A 46 346 142 HOH HOH . I 5 HOH A 47 347 59 HOH HOH . I 5 HOH A 48 348 23 HOH HOH . I 5 HOH A 49 349 226 HOH HOH . I 5 HOH A 50 350 8 HOH HOH . I 5 HOH A 51 351 80 HOH HOH . I 5 HOH A 52 352 106 HOH HOH . I 5 HOH A 53 353 260 HOH HOH . I 5 HOH A 54 354 41 HOH HOH . I 5 HOH A 55 355 3 HOH HOH . I 5 HOH A 56 356 117 HOH HOH . I 5 HOH A 57 357 138 HOH HOH . I 5 HOH A 58 358 48 HOH HOH . I 5 HOH A 59 359 54 HOH HOH . I 5 HOH A 60 360 227 HOH HOH . I 5 HOH A 61 361 192 HOH HOH . I 5 HOH A 62 362 16 HOH HOH . I 5 HOH A 63 363 103 HOH HOH . I 5 HOH A 64 364 258 HOH HOH . I 5 HOH A 65 365 118 HOH HOH . I 5 HOH A 66 366 30 HOH HOH . I 5 HOH A 67 367 25 HOH HOH . I 5 HOH A 68 368 267 HOH HOH . I 5 HOH A 69 369 270 HOH HOH . I 5 HOH A 70 370 190 HOH HOH . I 5 HOH A 71 371 22 HOH HOH . I 5 HOH A 72 372 197 HOH HOH . I 5 HOH A 73 373 77 HOH HOH . I 5 HOH A 74 374 187 HOH HOH . I 5 HOH A 75 375 15 HOH HOH . I 5 HOH A 76 376 19 HOH HOH . I 5 HOH A 77 377 168 HOH HOH . I 5 HOH A 78 378 105 HOH HOH . I 5 HOH A 79 379 223 HOH HOH . I 5 HOH A 80 380 24 HOH HOH . I 5 HOH A 81 381 76 HOH HOH . I 5 HOH A 82 382 5 HOH HOH . I 5 HOH A 83 383 148 HOH HOH . I 5 HOH A 84 384 182 HOH HOH . I 5 HOH A 85 385 178 HOH HOH . I 5 HOH A 86 386 193 HOH HOH . I 5 HOH A 87 387 125 HOH HOH . I 5 HOH A 88 388 147 HOH HOH . I 5 HOH A 89 389 122 HOH HOH . I 5 HOH A 90 390 171 HOH HOH . I 5 HOH A 91 391 164 HOH HOH . I 5 HOH A 92 392 157 HOH HOH . I 5 HOH A 93 393 222 HOH HOH . I 5 HOH A 94 394 199 HOH HOH . I 5 HOH A 95 395 154 HOH HOH . I 5 HOH A 96 396 49 HOH HOH . I 5 HOH A 97 397 60 HOH HOH . I 5 HOH A 98 398 198 HOH HOH . I 5 HOH A 99 399 220 HOH HOH . I 5 HOH A 100 400 229 HOH HOH . I 5 HOH A 101 401 221 HOH HOH . I 5 HOH A 102 402 119 HOH HOH . I 5 HOH A 103 403 200 HOH HOH . I 5 HOH A 104 404 170 HOH HOH . I 5 HOH A 105 405 66 HOH HOH . I 5 HOH A 106 406 155 HOH HOH . I 5 HOH A 107 407 113 HOH HOH . I 5 HOH A 108 408 261 HOH HOH . I 5 HOH A 109 409 177 HOH HOH . I 5 HOH A 110 410 46 HOH HOH . I 5 HOH A 111 411 53 HOH HOH . I 5 HOH A 112 412 217 HOH HOH . I 5 HOH A 113 413 269 HOH HOH . I 5 HOH A 114 414 184 HOH HOH . I 5 HOH A 115 415 63 HOH HOH . I 5 HOH A 116 416 90 HOH HOH . I 5 HOH A 117 417 185 HOH HOH . I 5 HOH A 118 418 85 HOH HOH . I 5 HOH A 119 419 194 HOH HOH . I 5 HOH A 120 420 175 HOH HOH . I 5 HOH A 121 421 149 HOH HOH . J 5 HOH B 1 301 241 HOH HOH . J 5 HOH B 2 302 130 HOH HOH . J 5 HOH B 3 303 213 HOH HOH . J 5 HOH B 4 304 263 HOH HOH . J 5 HOH B 5 305 214 HOH HOH . J 5 HOH B 6 306 206 HOH HOH . J 5 HOH B 7 307 254 HOH HOH . J 5 HOH B 8 308 176 HOH HOH . J 5 HOH B 9 309 97 HOH HOH . J 5 HOH B 10 310 252 HOH HOH . J 5 HOH B 11 311 72 HOH HOH . J 5 HOH B 12 312 94 HOH HOH . J 5 HOH B 13 313 247 HOH HOH . J 5 HOH B 14 314 1 HOH HOH . J 5 HOH B 15 315 251 HOH HOH . J 5 HOH B 16 316 7 HOH HOH . J 5 HOH B 17 317 146 HOH HOH . J 5 HOH B 18 318 248 HOH HOH . J 5 HOH B 19 319 209 HOH HOH . J 5 HOH B 20 320 99 HOH HOH . J 5 HOH B 21 321 159 HOH HOH . J 5 HOH B 22 322 109 HOH HOH . J 5 HOH B 23 323 208 HOH HOH . J 5 HOH B 24 324 2 HOH HOH . J 5 HOH B 25 325 212 HOH HOH . J 5 HOH B 26 326 268 HOH HOH . J 5 HOH B 27 327 160 HOH HOH . J 5 HOH B 28 328 143 HOH HOH . J 5 HOH B 29 329 150 HOH HOH . J 5 HOH B 30 330 230 HOH HOH . J 5 HOH B 31 331 126 HOH HOH . J 5 HOH B 32 332 12 HOH HOH . J 5 HOH B 33 333 112 HOH HOH . J 5 HOH B 34 334 211 HOH HOH . J 5 HOH B 35 335 123 HOH HOH . J 5 HOH B 36 336 78 HOH HOH . J 5 HOH B 37 337 256 HOH HOH . J 5 HOH B 38 338 62 HOH HOH . J 5 HOH B 39 339 28 HOH HOH . J 5 HOH B 40 340 234 HOH HOH . J 5 HOH B 41 341 68 HOH HOH . J 5 HOH B 42 342 169 HOH HOH . J 5 HOH B 43 343 162 HOH HOH . J 5 HOH B 44 344 34 HOH HOH . J 5 HOH B 45 345 6 HOH HOH . J 5 HOH B 46 346 158 HOH HOH . J 5 HOH B 47 347 11 HOH HOH . J 5 HOH B 48 348 26 HOH HOH . J 5 HOH B 49 349 89 HOH HOH . J 5 HOH B 50 350 4 HOH HOH . J 5 HOH B 51 351 10 HOH HOH . J 5 HOH B 52 352 110 HOH HOH . J 5 HOH B 53 353 39 HOH HOH . J 5 HOH B 54 354 71 HOH HOH . J 5 HOH B 55 355 204 HOH HOH . J 5 HOH B 56 356 91 HOH HOH . J 5 HOH B 57 357 98 HOH HOH . J 5 HOH B 58 358 153 HOH HOH . J 5 HOH B 59 359 133 HOH HOH . J 5 HOH B 60 360 189 HOH HOH . J 5 HOH B 61 361 124 HOH HOH . J 5 HOH B 62 362 9 HOH HOH . J 5 HOH B 63 363 188 HOH HOH . J 5 HOH B 64 364 186 HOH HOH . J 5 HOH B 65 365 36 HOH HOH . J 5 HOH B 66 366 17 HOH HOH . J 5 HOH B 67 367 173 HOH HOH . J 5 HOH B 68 368 51 HOH HOH . J 5 HOH B 69 369 43 HOH HOH . J 5 HOH B 70 370 253 HOH HOH . J 5 HOH B 71 371 202 HOH HOH . J 5 HOH B 72 372 232 HOH HOH . J 5 HOH B 73 373 196 HOH HOH . J 5 HOH B 74 374 131 HOH HOH . J 5 HOH B 75 375 156 HOH HOH . J 5 HOH B 76 376 249 HOH HOH . J 5 HOH B 77 377 47 HOH HOH . J 5 HOH B 78 378 141 HOH HOH . J 5 HOH B 79 379 140 HOH HOH . J 5 HOH B 80 380 61 HOH HOH . J 5 HOH B 81 381 87 HOH HOH . J 5 HOH B 82 382 205 HOH HOH . J 5 HOH B 83 383 52 HOH HOH . J 5 HOH B 84 384 246 HOH HOH . J 5 HOH B 85 385 195 HOH HOH . J 5 HOH B 86 386 37 HOH HOH . J 5 HOH B 87 387 79 HOH HOH . J 5 HOH B 88 388 129 HOH HOH . J 5 HOH B 89 389 259 HOH HOH . J 5 HOH B 90 390 82 HOH HOH . J 5 HOH B 91 391 271 HOH HOH . J 5 HOH B 92 392 21 HOH HOH . J 5 HOH B 93 393 31 HOH HOH . J 5 HOH B 94 394 231 HOH HOH . J 5 HOH B 95 395 70 HOH HOH . J 5 HOH B 96 396 181 HOH HOH . J 5 HOH B 97 397 242 HOH HOH . J 5 HOH B 98 398 42 HOH HOH . J 5 HOH B 99 399 58 HOH HOH . J 5 HOH B 100 400 73 HOH HOH . J 5 HOH B 101 401 32 HOH HOH . J 5 HOH B 102 402 64 HOH HOH . J 5 HOH B 103 403 179 HOH HOH . J 5 HOH B 104 404 20 HOH HOH . J 5 HOH B 105 405 225 HOH HOH . J 5 HOH B 106 406 84 HOH HOH . J 5 HOH B 107 407 83 HOH HOH . J 5 HOH B 108 408 33 HOH HOH . J 5 HOH B 109 409 135 HOH HOH . J 5 HOH B 110 410 239 HOH HOH . J 5 HOH B 111 411 92 HOH HOH . J 5 HOH B 112 412 237 HOH HOH . J 5 HOH B 113 413 127 HOH HOH . J 5 HOH B 114 414 18 HOH HOH . J 5 HOH B 115 415 27 HOH HOH . J 5 HOH B 116 416 65 HOH HOH . J 5 HOH B 117 417 236 HOH HOH . J 5 HOH B 118 418 88 HOH HOH . J 5 HOH B 119 419 50 HOH HOH . J 5 HOH B 120 420 152 HOH HOH . J 5 HOH B 121 421 272 HOH HOH . J 5 HOH B 122 422 120 HOH HOH . J 5 HOH B 123 423 137 HOH HOH . J 5 HOH B 124 424 235 HOH HOH . J 5 HOH B 125 425 262 HOH HOH . J 5 HOH B 126 426 174 HOH HOH . J 5 HOH B 127 427 107 HOH HOH . J 5 HOH B 128 428 95 HOH HOH . J 5 HOH B 129 429 207 HOH HOH . J 5 HOH B 130 430 165 HOH HOH . J 5 HOH B 131 431 101 HOH HOH . J 5 HOH B 132 432 238 HOH HOH . J 5 HOH B 133 433 266 HOH HOH . J 5 HOH B 134 434 111 HOH HOH . J 5 HOH B 135 435 228 HOH HOH . J 5 HOH B 136 436 163 HOH HOH . J 5 HOH B 137 437 134 HOH HOH . J 5 HOH B 138 438 67 HOH HOH . J 5 HOH B 139 439 114 HOH HOH . J 5 HOH B 140 440 69 HOH HOH . J 5 HOH B 141 441 136 HOH HOH . J 5 HOH B 142 442 167 HOH HOH . J 5 HOH B 143 443 144 HOH HOH . J 5 HOH B 144 444 74 HOH HOH . J 5 HOH B 145 445 96 HOH HOH . J 5 HOH B 146 446 183 HOH HOH . J 5 HOH B 147 447 128 HOH HOH . J 5 HOH B 148 448 257 HOH HOH . J 5 HOH B 149 449 81 HOH HOH . J 5 HOH B 150 450 132 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -19.211 _atom_site.Cartn_y 7.551 _atom_site.Cartn_z 3.385 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.41 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #