data_5PO9 # _model_server_result.job_id 58wwhR9T1zJVYxJ69as6Pg _model_server_result.datetime_utc '2024-11-09 02:47:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5po9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 5PO9 # _exptl.entry_id 5PO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5PO9 _cell.length_a 54.778 _cell.length_b 56.41 _cell.length_c 100.661 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 108 A LYS 108 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc2 G O HOH . A HOH 336 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc3 B O MET 107 B MET 107 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 B O ASN 110 B ASN 110 1_555 D NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc5 D NA NA . B NA 201 1_555 H O HOH . B HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5PO9 _atom_sites.fract_transf_matrix[1][1] 0.018256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8T7 A 1 201 1 8T7 LIG . D 3 NA B 1 201 1 NA NA . E 4 EDO B 1 202 4 EDO EDO . F 2 8T7 B 1 203 2 8T7 LIG . G 5 HOH A 1 301 106 HOH HOH . G 5 HOH A 2 302 56 HOH HOH . G 5 HOH A 3 303 216 HOH HOH . G 5 HOH A 4 304 260 HOH HOH . G 5 HOH A 5 305 182 HOH HOH . G 5 HOH A 6 306 104 HOH HOH . G 5 HOH A 7 307 250 HOH HOH . G 5 HOH A 8 308 190 HOH HOH . G 5 HOH A 9 309 210 HOH HOH . G 5 HOH A 10 310 86 HOH HOH . G 5 HOH A 11 311 240 HOH HOH . G 5 HOH A 12 312 29 HOH HOH . G 5 HOH A 13 313 108 HOH HOH . G 5 HOH A 14 314 110 HOH HOH . G 5 HOH A 15 315 23 HOH HOH . G 5 HOH A 16 316 93 HOH HOH . G 5 HOH A 17 317 258 HOH HOH . G 5 HOH A 18 318 191 HOH HOH . G 5 HOH A 19 319 166 HOH HOH . G 5 HOH A 20 320 161 HOH HOH . G 5 HOH A 21 321 139 HOH HOH . G 5 HOH A 22 322 44 HOH HOH . G 5 HOH A 23 323 243 HOH HOH . G 5 HOH A 24 324 172 HOH HOH . G 5 HOH A 25 325 116 HOH HOH . G 5 HOH A 26 326 142 HOH HOH . G 5 HOH A 27 327 102 HOH HOH . G 5 HOH A 28 328 14 HOH HOH . G 5 HOH A 29 329 41 HOH HOH . G 5 HOH A 30 330 193 HOH HOH . G 5 HOH A 31 331 222 HOH HOH . G 5 HOH A 32 332 45 HOH HOH . G 5 HOH A 33 333 244 HOH HOH . G 5 HOH A 34 334 16 HOH HOH . G 5 HOH A 35 335 223 HOH HOH . G 5 HOH A 36 336 22 HOH HOH . G 5 HOH A 37 337 171 HOH HOH . G 5 HOH A 38 338 122 HOH HOH . G 5 HOH A 39 339 80 HOH HOH . G 5 HOH A 40 340 197 HOH HOH . G 5 HOH A 41 341 77 HOH HOH . G 5 HOH A 42 342 180 HOH HOH . G 5 HOH A 43 343 59 HOH HOH . G 5 HOH A 44 344 3 HOH HOH . G 5 HOH A 45 345 201 HOH HOH . G 5 HOH A 46 346 24 HOH HOH . G 5 HOH A 47 347 38 HOH HOH . G 5 HOH A 48 348 203 HOH HOH . G 5 HOH A 49 349 105 HOH HOH . G 5 HOH A 50 350 8 HOH HOH . G 5 HOH A 51 351 100 HOH HOH . G 5 HOH A 52 352 48 HOH HOH . G 5 HOH A 53 353 231 HOH HOH . G 5 HOH A 54 354 148 HOH HOH . G 5 HOH A 55 355 35 HOH HOH . G 5 HOH A 56 356 245 HOH HOH . G 5 HOH A 57 357 227 HOH HOH . G 5 HOH A 58 358 49 HOH HOH . G 5 HOH A 59 359 224 HOH HOH . G 5 HOH A 60 360 60 HOH HOH . G 5 HOH A 61 361 13 HOH HOH . G 5 HOH A 62 362 25 HOH HOH . G 5 HOH A 63 363 229 HOH HOH . G 5 HOH A 64 364 19 HOH HOH . G 5 HOH A 65 365 54 HOH HOH . G 5 HOH A 66 366 147 HOH HOH . G 5 HOH A 67 367 57 HOH HOH . G 5 HOH A 68 368 55 HOH HOH . G 5 HOH A 69 369 168 HOH HOH . G 5 HOH A 70 370 178 HOH HOH . G 5 HOH A 71 371 187 HOH HOH . G 5 HOH A 72 372 177 HOH HOH . G 5 HOH A 73 373 226 HOH HOH . G 5 HOH A 74 374 103 HOH HOH . G 5 HOH A 75 375 157 HOH HOH . G 5 HOH A 76 376 15 HOH HOH . G 5 HOH A 77 377 115 HOH HOH . G 5 HOH A 78 378 155 HOH HOH . G 5 HOH A 79 379 40 HOH HOH . G 5 HOH A 80 380 192 HOH HOH . G 5 HOH A 81 381 30 HOH HOH . G 5 HOH A 82 382 219 HOH HOH . G 5 HOH A 83 383 215 HOH HOH . G 5 HOH A 84 384 5 HOH HOH . G 5 HOH A 85 385 145 HOH HOH . G 5 HOH A 86 386 164 HOH HOH . G 5 HOH A 87 387 76 HOH HOH . G 5 HOH A 88 388 233 HOH HOH . G 5 HOH A 89 389 117 HOH HOH . G 5 HOH A 90 390 66 HOH HOH . G 5 HOH A 91 391 264 HOH HOH . G 5 HOH A 92 392 154 HOH HOH . G 5 HOH A 93 393 263 HOH HOH . G 5 HOH A 94 394 220 HOH HOH . G 5 HOH A 95 395 199 HOH HOH . G 5 HOH A 96 396 170 HOH HOH . G 5 HOH A 97 397 200 HOH HOH . G 5 HOH A 98 398 221 HOH HOH . G 5 HOH A 99 399 198 HOH HOH . G 5 HOH A 100 400 119 HOH HOH . G 5 HOH A 101 401 113 HOH HOH . G 5 HOH A 102 402 53 HOH HOH . G 5 HOH A 103 403 151 HOH HOH . G 5 HOH A 104 404 217 HOH HOH . G 5 HOH A 105 405 125 HOH HOH . G 5 HOH A 106 406 46 HOH HOH . G 5 HOH A 107 407 261 HOH HOH . G 5 HOH A 108 408 63 HOH HOH . G 5 HOH A 109 409 85 HOH HOH . G 5 HOH A 110 410 194 HOH HOH . G 5 HOH A 111 411 184 HOH HOH . G 5 HOH A 112 412 90 HOH HOH . G 5 HOH A 113 413 149 HOH HOH . H 5 HOH B 1 301 176 HOH HOH . H 5 HOH B 2 302 254 HOH HOH . H 5 HOH B 3 303 234 HOH HOH . H 5 HOH B 4 304 225 HOH HOH . H 5 HOH B 5 305 253 HOH HOH . H 5 HOH B 6 306 248 HOH HOH . H 5 HOH B 7 307 208 HOH HOH . H 5 HOH B 8 308 204 HOH HOH . H 5 HOH B 9 309 160 HOH HOH . H 5 HOH B 10 310 140 HOH HOH . H 5 HOH B 11 311 211 HOH HOH . H 5 HOH B 12 312 72 HOH HOH . H 5 HOH B 13 313 162 HOH HOH . H 5 HOH B 14 314 123 HOH HOH . H 5 HOH B 15 315 98 HOH HOH . H 5 HOH B 16 316 112 HOH HOH . H 5 HOH B 17 317 131 HOH HOH . H 5 HOH B 18 318 186 HOH HOH . H 5 HOH B 19 319 124 HOH HOH . H 5 HOH B 20 320 252 HOH HOH . H 5 HOH B 21 321 249 HOH HOH . H 5 HOH B 22 322 235 HOH HOH . H 5 HOH B 23 323 28 HOH HOH . H 5 HOH B 24 324 218 HOH HOH . H 5 HOH B 25 325 247 HOH HOH . H 5 HOH B 26 326 99 HOH HOH . H 5 HOH B 27 327 51 HOH HOH . H 5 HOH B 28 328 169 HOH HOH . H 5 HOH B 29 329 6 HOH HOH . H 5 HOH B 30 330 17 HOH HOH . H 5 HOH B 31 331 109 HOH HOH . H 5 HOH B 32 332 214 HOH HOH . H 5 HOH B 33 333 7 HOH HOH . H 5 HOH B 34 334 1 HOH HOH . H 5 HOH B 35 335 189 HOH HOH . H 5 HOH B 36 336 130 HOH HOH . H 5 HOH B 37 337 230 HOH HOH . H 5 HOH B 38 338 31 HOH HOH . H 5 HOH B 39 339 174 HOH HOH . H 5 HOH B 40 340 43 HOH HOH . H 5 HOH B 41 341 188 HOH HOH . H 5 HOH B 42 342 12 HOH HOH . H 5 HOH B 43 343 179 HOH HOH . H 5 HOH B 44 344 195 HOH HOH . H 5 HOH B 45 345 2 HOH HOH . H 5 HOH B 46 346 212 HOH HOH . H 5 HOH B 47 347 42 HOH HOH . H 5 HOH B 48 348 94 HOH HOH . H 5 HOH B 49 349 97 HOH HOH . H 5 HOH B 50 350 10 HOH HOH . H 5 HOH B 51 351 26 HOH HOH . H 5 HOH B 52 352 27 HOH HOH . H 5 HOH B 53 353 92 HOH HOH . H 5 HOH B 54 354 181 HOH HOH . H 5 HOH B 55 355 36 HOH HOH . H 5 HOH B 56 356 237 HOH HOH . H 5 HOH B 57 357 146 HOH HOH . H 5 HOH B 58 358 61 HOH HOH . H 5 HOH B 59 359 91 HOH HOH . H 5 HOH B 60 360 71 HOH HOH . H 5 HOH B 61 361 143 HOH HOH . H 5 HOH B 62 362 158 HOH HOH . H 5 HOH B 63 363 4 HOH HOH . H 5 HOH B 64 364 34 HOH HOH . H 5 HOH B 65 365 88 HOH HOH . H 5 HOH B 66 366 68 HOH HOH . H 5 HOH B 67 367 156 HOH HOH . H 5 HOH B 68 368 150 HOH HOH . H 5 HOH B 69 369 89 HOH HOH . H 5 HOH B 70 370 39 HOH HOH . H 5 HOH B 71 371 256 HOH HOH . H 5 HOH B 72 372 251 HOH HOH . H 5 HOH B 73 373 21 HOH HOH . H 5 HOH B 74 374 133 HOH HOH . H 5 HOH B 75 375 20 HOH HOH . H 5 HOH B 76 376 246 HOH HOH . H 5 HOH B 77 377 239 HOH HOH . H 5 HOH B 78 378 11 HOH HOH . H 5 HOH B 79 379 236 HOH HOH . H 5 HOH B 80 380 70 HOH HOH . H 5 HOH B 81 381 9 HOH HOH . H 5 HOH B 82 382 138 HOH HOH . H 5 HOH B 83 383 33 HOH HOH . H 5 HOH B 84 384 126 HOH HOH . H 5 HOH B 85 385 37 HOH HOH . H 5 HOH B 86 386 52 HOH HOH . H 5 HOH B 87 387 232 HOH HOH . H 5 HOH B 88 388 111 HOH HOH . H 5 HOH B 89 389 196 HOH HOH . H 5 HOH B 90 390 79 HOH HOH . H 5 HOH B 91 391 87 HOH HOH . H 5 HOH B 92 392 137 HOH HOH . H 5 HOH B 93 393 262 HOH HOH . H 5 HOH B 94 394 83 HOH HOH . H 5 HOH B 95 395 213 HOH HOH . H 5 HOH B 96 396 159 HOH HOH . H 5 HOH B 97 397 73 HOH HOH . H 5 HOH B 98 398 82 HOH HOH . H 5 HOH B 99 399 75 HOH HOH . H 5 HOH B 100 400 141 HOH HOH . H 5 HOH B 101 401 127 HOH HOH . H 5 HOH B 102 402 78 HOH HOH . H 5 HOH B 103 403 205 HOH HOH . H 5 HOH B 104 404 18 HOH HOH . H 5 HOH B 105 405 47 HOH HOH . H 5 HOH B 106 406 62 HOH HOH . H 5 HOH B 107 407 84 HOH HOH . H 5 HOH B 108 408 58 HOH HOH . H 5 HOH B 109 409 135 HOH HOH . H 5 HOH B 110 410 120 HOH HOH . H 5 HOH B 111 411 129 HOH HOH . H 5 HOH B 112 412 259 HOH HOH . H 5 HOH B 113 413 173 HOH HOH . H 5 HOH B 114 414 202 HOH HOH . H 5 HOH B 115 415 64 HOH HOH . H 5 HOH B 116 416 65 HOH HOH . H 5 HOH B 117 417 152 HOH HOH . H 5 HOH B 118 418 32 HOH HOH . H 5 HOH B 119 419 209 HOH HOH . H 5 HOH B 120 420 50 HOH HOH . H 5 HOH B 121 421 118 HOH HOH . H 5 HOH B 122 422 165 HOH HOH . H 5 HOH B 123 423 144 HOH HOH . H 5 HOH B 124 424 107 HOH HOH . H 5 HOH B 125 425 167 HOH HOH . H 5 HOH B 126 426 114 HOH HOH . H 5 HOH B 127 427 67 HOH HOH . H 5 HOH B 128 428 238 HOH HOH . H 5 HOH B 129 429 207 HOH HOH . H 5 HOH B 130 430 163 HOH HOH . H 5 HOH B 131 431 101 HOH HOH . H 5 HOH B 132 432 96 HOH HOH . H 5 HOH B 133 433 95 HOH HOH . H 5 HOH B 134 434 69 HOH HOH . H 5 HOH B 135 435 134 HOH HOH . H 5 HOH B 136 436 121 HOH HOH . H 5 HOH B 137 437 153 HOH HOH . H 5 HOH B 138 438 206 HOH HOH . H 5 HOH B 139 439 128 HOH HOH . H 5 HOH B 140 440 183 HOH HOH . H 5 HOH B 141 441 228 HOH HOH . H 5 HOH B 142 442 81 HOH HOH . H 5 HOH B 143 443 136 HOH HOH . H 5 HOH B 144 444 74 HOH HOH . H 5 HOH B 145 445 175 HOH HOH . H 5 HOH B 146 446 257 HOH HOH . H 5 HOH B 147 447 185 HOH HOH . H 5 HOH B 148 448 132 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -19.067 _atom_site.Cartn_y 7.683 _atom_site.Cartn_z 3.271 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.71 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #