data_5POP # _model_server_result.job_id ITVXp8dHfSVUbaMFbEIFcg _model_server_result.datetime_utc '2025-10-01 11:44:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5pop # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5POP # _exptl.entry_id 5POP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5POP _cell.length_a 55.615 _cell.length_b 56.575 _cell.length_c 101.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5POP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 108 A LYS 108 1_555 F NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 I O HOH . A HOH 342 1_555 F NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 I O HOH . A HOH 372 1_555 F NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc4 B O MET 107 B MET 107 1_555 F NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc5 B O ASN 110 B ASN 110 1_555 F NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag ? _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 114 n n C1 C2 EDO sing 115 n n C1 H11 EDO sing 116 n n C1 H12 EDO sing 117 n n O1 HO1 EDO sing 118 n n C2 O2 EDO sing 119 n n C2 H21 EDO sing 120 n n C2 H22 EDO sing 121 n n O2 HO2 EDO sing 122 n n # _atom_sites.entry_id 5POP _atom_sites.fract_transf_matrix[1][1] 0.017981 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 201 1 EDO EDO ? D 2 EDO A 1 202 2 EDO EDO ? E 3 8TV A 1 203 1 8TV LIG ? F 4 NA B 1 201 1 NA NA ? G 2 EDO B 1 202 4 EDO EDO ? H 3 8TV B 1 203 2 8TV LIG ? I 5 HOH A 1 301 224 HOH HOH ? I 5 HOH A 2 302 270 HOH HOH ? I 5 HOH A 3 303 76 HOH HOH ? I 5 HOH A 4 304 243 HOH HOH ? I 5 HOH A 5 305 216 HOH HOH ? I 5 HOH A 6 306 100 HOH HOH ? I 5 HOH A 7 307 263 HOH HOH ? I 5 HOH A 8 308 203 HOH HOH ? I 5 HOH A 9 309 215 HOH HOH ? I 5 HOH A 10 310 222 HOH HOH ? I 5 HOH A 11 311 226 HOH HOH ? I 5 HOH A 12 312 25 HOH HOH ? I 5 HOH A 13 313 172 HOH HOH ? I 5 HOH A 14 314 157 HOH HOH ? I 5 HOH A 15 315 199 HOH HOH ? I 5 HOH A 16 316 104 HOH HOH ? I 5 HOH A 17 317 233 HOH HOH ? I 5 HOH A 18 318 245 HOH HOH ? I 5 HOH A 19 319 180 HOH HOH ? I 5 HOH A 20 320 13 HOH HOH ? I 5 HOH A 21 321 138 HOH HOH ? I 5 HOH A 22 322 240 HOH HOH ? I 5 HOH A 23 323 219 HOH HOH ? I 5 HOH A 24 324 108 HOH HOH ? I 5 HOH A 25 325 45 HOH HOH ? I 5 HOH A 26 326 86 HOH HOH ? I 5 HOH A 27 327 250 HOH HOH ? I 5 HOH A 28 328 41 HOH HOH ? I 5 HOH A 29 329 57 HOH HOH ? I 5 HOH A 30 330 166 HOH HOH ? I 5 HOH A 31 331 139 HOH HOH ? I 5 HOH A 32 332 161 HOH HOH ? I 5 HOH A 33 333 56 HOH HOH ? I 5 HOH A 34 334 29 HOH HOH ? I 5 HOH A 35 335 192 HOH HOH ? I 5 HOH A 36 336 48 HOH HOH ? I 5 HOH A 37 337 142 HOH HOH ? I 5 HOH A 38 338 38 HOH HOH ? I 5 HOH A 39 339 151 HOH HOH ? I 5 HOH A 40 340 106 HOH HOH ? I 5 HOH A 41 341 59 HOH HOH ? I 5 HOH A 42 342 218 HOH HOH ? I 5 HOH A 43 343 102 HOH HOH ? I 5 HOH A 44 344 227 HOH HOH ? I 5 HOH A 45 345 191 HOH HOH ? I 5 HOH A 46 346 16 HOH HOH ? I 5 HOH A 47 347 14 HOH HOH ? I 5 HOH A 48 348 145 HOH HOH ? I 5 HOH A 49 349 8 HOH HOH ? I 5 HOH A 50 350 121 HOH HOH ? I 5 HOH A 51 351 201 HOH HOH ? I 5 HOH A 52 352 23 HOH HOH ? I 5 HOH A 53 353 115 HOH HOH ? I 5 HOH A 54 354 80 HOH HOH ? I 5 HOH A 55 355 272 HOH HOH ? I 5 HOH A 56 356 273 HOH HOH ? I 5 HOH A 57 357 171 HOH HOH ? I 5 HOH A 58 358 93 HOH HOH ? I 5 HOH A 59 359 258 HOH HOH ? I 5 HOH A 60 360 75 HOH HOH ? I 5 HOH A 61 361 44 HOH HOH ? I 5 HOH A 62 362 244 HOH HOH ? I 5 HOH A 63 363 148 HOH HOH ? I 5 HOH A 64 364 182 HOH HOH ? I 5 HOH A 65 365 3 HOH HOH ? I 5 HOH A 66 366 77 HOH HOH ? I 5 HOH A 67 367 55 HOH HOH ? I 5 HOH A 68 368 116 HOH HOH ? I 5 HOH A 69 369 35 HOH HOH ? I 5 HOH A 70 370 193 HOH HOH ? I 5 HOH A 71 371 24 HOH HOH ? I 5 HOH A 72 372 22 HOH HOH ? I 5 HOH A 73 373 15 HOH HOH ? I 5 HOH A 74 374 54 HOH HOH ? I 5 HOH A 75 375 187 HOH HOH ? I 5 HOH A 76 376 122 HOH HOH ? I 5 HOH A 77 377 19 HOH HOH ? I 5 HOH A 78 378 197 HOH HOH ? I 5 HOH A 79 379 30 HOH HOH ? I 5 HOH A 80 380 27 HOH HOH ? I 5 HOH A 81 381 147 HOH HOH ? I 5 HOH A 82 382 117 HOH HOH ? I 5 HOH A 83 383 105 HOH HOH ? I 5 HOH A 84 384 5 HOH HOH ? I 5 HOH A 85 385 168 HOH HOH ? I 5 HOH A 86 386 223 HOH HOH ? I 5 HOH A 87 387 190 HOH HOH ? I 5 HOH A 88 388 255 HOH HOH ? I 5 HOH A 89 389 178 HOH HOH ? I 5 HOH A 90 390 103 HOH HOH ? I 5 HOH A 91 391 111 HOH HOH ? I 5 HOH A 92 392 221 HOH HOH ? I 5 HOH A 93 393 200 HOH HOH ? I 5 HOH A 94 394 49 HOH HOH ? I 5 HOH A 95 395 220 HOH HOH ? I 5 HOH A 96 396 119 HOH HOH ? I 5 HOH A 97 397 164 HOH HOH ? I 5 HOH A 98 398 154 HOH HOH ? I 5 HOH A 99 399 155 HOH HOH ? I 5 HOH A 100 400 113 HOH HOH ? I 5 HOH A 101 401 170 HOH HOH ? I 5 HOH A 102 402 198 HOH HOH ? I 5 HOH A 103 403 66 HOH HOH ? I 5 HOH A 104 404 63 HOH HOH ? I 5 HOH A 105 405 53 HOH HOH ? I 5 HOH A 106 406 262 HOH HOH ? I 5 HOH A 107 407 184 HOH HOH ? I 5 HOH A 108 408 46 HOH HOH ? I 5 HOH A 109 409 125 HOH HOH ? I 5 HOH A 110 410 90 HOH HOH ? I 5 HOH A 111 411 217 HOH HOH ? I 5 HOH A 112 412 185 HOH HOH ? I 5 HOH A 113 413 177 HOH HOH ? I 5 HOH A 114 414 60 HOH HOH ? I 5 HOH A 115 415 85 HOH HOH ? I 5 HOH A 116 416 194 HOH HOH ? I 5 HOH A 117 417 149 HOH HOH ? J 5 HOH B 1 301 254 HOH HOH ? J 5 HOH B 2 302 130 HOH HOH ? J 5 HOH B 3 303 247 HOH HOH ? J 5 HOH B 4 304 97 HOH HOH ? J 5 HOH B 5 305 160 HOH HOH ? J 5 HOH B 6 306 230 HOH HOH ? J 5 HOH B 7 307 208 HOH HOH ? J 5 HOH B 8 308 214 HOH HOH ? J 5 HOH B 9 309 189 HOH HOH ? J 5 HOH B 10 310 7 HOH HOH ? J 5 HOH B 11 311 141 HOH HOH ? J 5 HOH B 12 312 271 HOH HOH ? J 5 HOH B 13 313 206 HOH HOH ? J 5 HOH B 14 314 72 HOH HOH ? J 5 HOH B 15 315 269 HOH HOH ? J 5 HOH B 16 316 252 HOH HOH ? J 5 HOH B 17 317 47 HOH HOH ? J 5 HOH B 18 318 158 HOH HOH ? J 5 HOH B 19 319 140 HOH HOH ? J 5 HOH B 20 320 146 HOH HOH ? J 5 HOH B 21 321 173 HOH HOH ? J 5 HOH B 22 322 89 HOH HOH ? J 5 HOH B 23 323 40 HOH HOH ? J 5 HOH B 24 324 112 HOH HOH ? J 5 HOH B 25 325 210 HOH HOH ? J 5 HOH B 26 326 249 HOH HOH ? J 5 HOH B 27 327 126 HOH HOH ? J 5 HOH B 28 328 153 HOH HOH ? J 5 HOH B 29 329 68 HOH HOH ? J 5 HOH B 30 330 26 HOH HOH ? J 5 HOH B 31 331 2 HOH HOH ? J 5 HOH B 32 332 6 HOH HOH ? J 5 HOH B 33 333 10 HOH HOH ? J 5 HOH B 34 334 251 HOH HOH ? J 5 HOH B 35 335 261 HOH HOH ? J 5 HOH B 36 336 159 HOH HOH ? J 5 HOH B 37 337 42 HOH HOH ? J 5 HOH B 38 338 150 HOH HOH ? J 5 HOH B 39 339 4 HOH HOH ? J 5 HOH B 40 340 143 HOH HOH ? J 5 HOH B 41 341 98 HOH HOH ? J 5 HOH B 42 342 109 HOH HOH ? J 5 HOH B 43 343 94 HOH HOH ? J 5 HOH B 44 344 87 HOH HOH ? J 5 HOH B 45 345 204 HOH HOH ? J 5 HOH B 46 346 188 HOH HOH ? J 5 HOH B 47 347 110 HOH HOH ? J 5 HOH B 48 348 176 HOH HOH ? J 5 HOH B 49 349 34 HOH HOH ? J 5 HOH B 50 350 133 HOH HOH ? J 5 HOH B 51 351 131 HOH HOH ? J 5 HOH B 52 352 248 HOH HOH ? J 5 HOH B 53 353 99 HOH HOH ? J 5 HOH B 54 354 212 HOH HOH ? J 5 HOH B 55 355 39 HOH HOH ? J 5 HOH B 56 356 1 HOH HOH ? J 5 HOH B 57 357 12 HOH HOH ? J 5 HOH B 58 358 186 HOH HOH ? J 5 HOH B 59 359 259 HOH HOH ? J 5 HOH B 60 360 124 HOH HOH ? J 5 HOH B 61 361 195 HOH HOH ? J 5 HOH B 62 362 28 HOH HOH ? J 5 HOH B 63 363 235 HOH HOH ? J 5 HOH B 64 364 78 HOH HOH ? J 5 HOH B 65 365 9 HOH HOH ? J 5 HOH B 66 366 91 HOH HOH ? J 5 HOH B 67 367 123 HOH HOH ? J 5 HOH B 68 368 246 HOH HOH ? J 5 HOH B 69 369 88 HOH HOH ? J 5 HOH B 70 370 11 HOH HOH ? J 5 HOH B 71 371 71 HOH HOH ? J 5 HOH B 72 372 36 HOH HOH ? J 5 HOH B 73 373 234 HOH HOH ? J 5 HOH B 74 374 61 HOH HOH ? J 5 HOH B 75 375 202 HOH HOH ? J 5 HOH B 76 376 209 HOH HOH ? J 5 HOH B 77 377 162 HOH HOH ? J 5 HOH B 78 378 268 HOH HOH ? J 5 HOH B 79 379 156 HOH HOH ? J 5 HOH B 80 380 181 HOH HOH ? J 5 HOH B 81 381 51 HOH HOH ? J 5 HOH B 82 382 79 HOH HOH ? J 5 HOH B 83 383 179 HOH HOH ? J 5 HOH B 84 384 37 HOH HOH ? J 5 HOH B 85 385 20 HOH HOH ? J 5 HOH B 86 386 31 HOH HOH ? J 5 HOH B 87 387 237 HOH HOH ? J 5 HOH B 88 388 84 HOH HOH ? J 5 HOH B 89 389 211 HOH HOH ? J 5 HOH B 90 390 231 HOH HOH ? J 5 HOH B 91 391 43 HOH HOH ? J 5 HOH B 92 392 21 HOH HOH ? J 5 HOH B 93 393 52 HOH HOH ? J 5 HOH B 94 394 213 HOH HOH ? J 5 HOH B 95 395 50 HOH HOH ? J 5 HOH B 96 396 17 HOH HOH ? J 5 HOH B 97 397 32 HOH HOH ? J 5 HOH B 98 398 62 HOH HOH ? J 5 HOH B 99 399 65 HOH HOH ? J 5 HOH B 100 400 135 HOH HOH ? J 5 HOH B 101 401 169 HOH HOH ? J 5 HOH B 102 402 129 HOH HOH ? J 5 HOH B 103 403 33 HOH HOH ? J 5 HOH B 104 404 82 HOH HOH ? J 5 HOH B 105 405 232 HOH HOH ? J 5 HOH B 106 406 256 HOH HOH ? J 5 HOH B 107 407 64 HOH HOH ? J 5 HOH B 108 408 127 HOH HOH ? J 5 HOH B 109 409 239 HOH HOH ? J 5 HOH B 110 410 18 HOH HOH ? J 5 HOH B 111 411 118 HOH HOH ? J 5 HOH B 112 412 70 HOH HOH ? J 5 HOH B 113 413 260 HOH HOH ? J 5 HOH B 114 414 92 HOH HOH ? J 5 HOH B 115 415 83 HOH HOH ? J 5 HOH B 116 416 152 HOH HOH ? J 5 HOH B 117 417 73 HOH HOH ? J 5 HOH B 118 418 266 HOH HOH ? J 5 HOH B 119 419 58 HOH HOH ? J 5 HOH B 120 420 174 HOH HOH ? J 5 HOH B 121 421 205 HOH HOH ? J 5 HOH B 122 422 225 HOH HOH ? J 5 HOH B 123 423 120 HOH HOH ? J 5 HOH B 124 424 229 HOH HOH ? J 5 HOH B 125 425 236 HOH HOH ? J 5 HOH B 126 426 238 HOH HOH ? J 5 HOH B 127 427 137 HOH HOH ? J 5 HOH B 128 428 107 HOH HOH ? J 5 HOH B 129 429 95 HOH HOH ? J 5 HOH B 130 430 207 HOH HOH ? J 5 HOH B 131 431 101 HOH HOH ? J 5 HOH B 132 432 267 HOH HOH ? J 5 HOH B 133 433 96 HOH HOH ? J 5 HOH B 134 434 163 HOH HOH ? J 5 HOH B 135 435 134 HOH HOH ? J 5 HOH B 136 436 167 HOH HOH ? J 5 HOH B 137 437 136 HOH HOH ? J 5 HOH B 138 438 228 HOH HOH ? J 5 HOH B 139 439 165 HOH HOH ? J 5 HOH B 140 440 265 HOH HOH ? J 5 HOH B 141 441 69 HOH HOH ? J 5 HOH B 142 442 144 HOH HOH ? J 5 HOH B 143 443 67 HOH HOH ? J 5 HOH B 144 444 74 HOH HOH ? J 5 HOH B 145 445 264 HOH HOH ? J 5 HOH B 146 446 114 HOH HOH ? J 5 HOH B 147 447 128 HOH HOH ? J 5 HOH B 148 448 183 HOH HOH ? J 5 HOH B 149 449 257 HOH HOH ? J 5 HOH B 150 450 81 HOH HOH ? J 5 HOH B 151 451 175 HOH HOH ? J 5 HOH B 152 452 132 HOH HOH ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . C . C 2 -9.335 12.345 1.35 0.26 26.98 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . C . C 2 -10.036 11.128 1.64 0.26 26.81 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . C . C 2 -9.527 12.716 -0.115 0.26 29.59 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . C . C 2 -10.83 13.278 -0.298 0.26 28.64 ? O2 EDO 201 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #