data_5PP0 # _model_server_result.job_id tAbcCx1cNJKIqxsUKjbsuQ _model_server_result.datetime_utc '2024-11-04 23:05:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5pp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5PP0 # _exptl.entry_id 5PP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5PP0 _cell.length_a 55.611 _cell.length_b 56.637 _cell.length_c 101.677 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G 1 1 B,C,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 108 A LYS 108 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc2 G O HOH . A HOH 237 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc3 G O HOH . A HOH 259 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc4 B O MET 107 B MET 107 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc5 B O ASN 110 B ASN 110 1_555 C NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 103 n n C1 C2 EDO sing 104 n n C1 H11 EDO sing 105 n n C1 H12 EDO sing 106 n n O1 HO1 EDO sing 107 n n C2 O2 EDO sing 108 n n C2 H21 EDO sing 109 n n C2 H22 EDO sing 110 n n O2 HO2 EDO sing 111 n n # _atom_sites.entry_id 5PP0 _atom_sites.fract_transf_matrix[1][1] 0.017982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA B 1 201 1 NA NA . D 3 EDO B 1 202 3 EDO EDO . E 3 EDO B 1 203 4 EDO EDO . F 4 8UD B 1 204 1 8UD LIG . G 5 HOH A 1 201 261 HOH HOH . G 5 HOH A 2 202 100 HOH HOH . G 5 HOH A 3 203 243 HOH HOH . G 5 HOH A 4 204 216 HOH HOH . G 5 HOH A 5 205 248 HOH HOH . G 5 HOH A 6 206 233 HOH HOH . G 5 HOH A 7 207 226 HOH HOH . G 5 HOH A 8 208 201 HOH HOH . G 5 HOH A 9 209 13 HOH HOH . G 5 HOH A 10 210 250 HOH HOH . G 5 HOH A 11 211 224 HOH HOH . G 5 HOH A 12 212 240 HOH HOH . G 5 HOH A 13 213 172 HOH HOH . G 5 HOH A 14 214 166 HOH HOH . G 5 HOH A 15 215 219 HOH HOH . G 5 HOH A 16 216 139 HOH HOH . G 5 HOH A 17 217 38 HOH HOH . G 5 HOH A 18 218 57 HOH HOH . G 5 HOH A 19 219 104 HOH HOH . G 5 HOH A 20 220 161 HOH HOH . G 5 HOH A 21 221 59 HOH HOH . G 5 HOH A 22 222 191 HOH HOH . G 5 HOH A 23 223 40 HOH HOH . G 5 HOH A 24 224 215 HOH HOH . G 5 HOH A 25 225 56 HOH HOH . G 5 HOH A 26 226 245 HOH HOH . G 5 HOH A 27 227 86 HOH HOH . G 5 HOH A 28 228 116 HOH HOH . G 5 HOH A 29 229 151 HOH HOH . G 5 HOH A 30 230 108 HOH HOH . G 5 HOH A 31 231 180 HOH HOH . G 5 HOH A 32 232 29 HOH HOH . G 5 HOH A 33 233 145 HOH HOH . G 5 HOH A 34 234 45 HOH HOH . G 5 HOH A 35 235 115 HOH HOH . G 5 HOH A 36 236 48 HOH HOH . G 5 HOH A 37 237 218 HOH HOH . G 5 HOH A 38 238 41 HOH HOH . G 5 HOH A 39 239 227 HOH HOH . G 5 HOH A 40 240 44 HOH HOH . G 5 HOH A 41 241 23 HOH HOH . G 5 HOH A 42 242 203 HOH HOH . G 5 HOH A 43 243 138 HOH HOH . G 5 HOH A 44 244 93 HOH HOH . G 5 HOH A 45 245 14 HOH HOH . G 5 HOH A 46 246 3 HOH HOH . G 5 HOH A 47 247 55 HOH HOH . G 5 HOH A 48 248 190 HOH HOH . G 5 HOH A 49 249 102 HOH HOH . G 5 HOH A 50 250 121 HOH HOH . G 5 HOH A 51 251 54 HOH HOH . G 5 HOH A 52 252 157 HOH HOH . G 5 HOH A 53 253 25 HOH HOH . G 5 HOH A 54 254 8 HOH HOH . G 5 HOH A 55 255 80 HOH HOH . G 5 HOH A 56 256 117 HOH HOH . G 5 HOH A 57 257 112 HOH HOH . G 5 HOH A 58 258 187 HOH HOH . G 5 HOH A 59 259 22 HOH HOH . G 5 HOH A 60 260 142 HOH HOH . G 5 HOH A 61 261 24 HOH HOH . G 5 HOH A 62 262 30 HOH HOH . G 5 HOH A 63 263 244 HOH HOH . G 5 HOH A 64 264 15 HOH HOH . G 5 HOH A 65 265 223 HOH HOH . G 5 HOH A 66 266 148 HOH HOH . G 5 HOH A 67 267 258 HOH HOH . G 5 HOH A 68 268 19 HOH HOH . G 5 HOH A 69 269 75 HOH HOH . G 5 HOH A 70 270 35 HOH HOH . G 5 HOH A 71 271 193 HOH HOH . G 5 HOH A 72 272 197 HOH HOH . G 5 HOH A 73 273 171 HOH HOH . G 5 HOH A 74 274 155 HOH HOH . G 5 HOH A 75 275 5 HOH HOH . G 5 HOH A 76 276 222 HOH HOH . G 5 HOH A 77 277 192 HOH HOH . G 5 HOH A 78 278 103 HOH HOH . G 5 HOH A 79 279 168 HOH HOH . G 5 HOH A 80 280 147 HOH HOH . G 5 HOH A 81 281 182 HOH HOH . G 5 HOH A 82 282 125 HOH HOH . G 5 HOH A 83 283 76 HOH HOH . G 5 HOH A 84 284 255 HOH HOH . G 5 HOH A 85 285 105 HOH HOH . G 5 HOH A 86 286 178 HOH HOH . G 5 HOH A 87 287 154 HOH HOH . G 5 HOH A 88 288 119 HOH HOH . G 5 HOH A 89 289 49 HOH HOH . G 5 HOH A 90 290 122 HOH HOH . G 5 HOH A 91 291 221 HOH HOH . G 5 HOH A 92 292 220 HOH HOH . G 5 HOH A 93 293 200 HOH HOH . G 5 HOH A 94 294 198 HOH HOH . G 5 HOH A 95 295 164 HOH HOH . G 5 HOH A 96 296 111 HOH HOH . G 5 HOH A 97 297 170 HOH HOH . G 5 HOH A 98 298 66 HOH HOH . G 5 HOH A 99 299 46 HOH HOH . G 5 HOH A 100 300 177 HOH HOH . G 5 HOH A 101 301 60 HOH HOH . G 5 HOH A 102 302 53 HOH HOH . G 5 HOH A 103 303 217 HOH HOH . G 5 HOH A 104 304 184 HOH HOH . G 5 HOH A 105 305 185 HOH HOH . G 5 HOH A 106 306 90 HOH HOH . G 5 HOH A 107 307 113 HOH HOH . G 5 HOH A 108 308 63 HOH HOH . G 5 HOH A 109 309 85 HOH HOH . G 5 HOH A 110 310 194 HOH HOH . G 5 HOH A 111 311 175 HOH HOH . G 5 HOH A 112 312 149 HOH HOH . H 5 HOH B 1 301 254 HOH HOH . H 5 HOH B 2 302 130 HOH HOH . H 5 HOH B 3 303 241 HOH HOH . H 5 HOH B 4 304 252 HOH HOH . H 5 HOH B 5 305 206 HOH HOH . H 5 HOH B 6 306 251 HOH HOH . H 5 HOH B 7 307 214 HOH HOH . H 5 HOH B 8 308 247 HOH HOH . H 5 HOH B 9 309 7 HOH HOH . H 5 HOH B 10 310 97 HOH HOH . H 5 HOH B 11 311 256 HOH HOH . H 5 HOH B 12 312 72 HOH HOH . H 5 HOH B 13 313 99 HOH HOH . H 5 HOH B 14 314 153 HOH HOH . H 5 HOH B 15 315 94 HOH HOH . H 5 HOH B 16 316 146 HOH HOH . H 5 HOH B 17 317 189 HOH HOH . H 5 HOH B 18 318 212 HOH HOH . H 5 HOH B 19 319 109 HOH HOH . H 5 HOH B 20 320 47 HOH HOH . H 5 HOH B 21 321 160 HOH HOH . H 5 HOH B 22 322 4 HOH HOH . H 5 HOH B 23 323 208 HOH HOH . H 5 HOH B 24 324 88 HOH HOH . H 5 HOH B 25 325 6 HOH HOH . H 5 HOH B 26 326 162 HOH HOH . H 5 HOH B 27 327 204 HOH HOH . H 5 HOH B 28 328 126 HOH HOH . H 5 HOH B 29 329 62 HOH HOH . H 5 HOH B 30 330 123 HOH HOH . H 5 HOH B 31 331 10 HOH HOH . H 5 HOH B 32 332 110 HOH HOH . H 5 HOH B 33 333 259 HOH HOH . H 5 HOH B 34 334 140 HOH HOH . H 5 HOH B 35 335 186 HOH HOH . H 5 HOH B 36 336 17 HOH HOH . H 5 HOH B 37 337 11 HOH HOH . H 5 HOH B 38 338 89 HOH HOH . H 5 HOH B 39 339 133 HOH HOH . H 5 HOH B 40 340 143 HOH HOH . H 5 HOH B 41 341 34 HOH HOH . H 5 HOH B 42 342 188 HOH HOH . H 5 HOH B 43 343 230 HOH HOH . H 5 HOH B 44 344 39 HOH HOH . H 5 HOH B 45 345 26 HOH HOH . H 5 HOH B 46 346 129 HOH HOH . H 5 HOH B 47 347 36 HOH HOH . H 5 HOH B 48 348 2 HOH HOH . H 5 HOH B 49 349 159 HOH HOH . H 5 HOH B 50 350 71 HOH HOH . H 5 HOH B 51 351 78 HOH HOH . H 5 HOH B 52 352 210 HOH HOH . H 5 HOH B 53 353 202 HOH HOH . H 5 HOH B 54 354 158 HOH HOH . H 5 HOH B 55 355 131 HOH HOH . H 5 HOH B 56 356 91 HOH HOH . H 5 HOH B 57 357 150 HOH HOH . H 5 HOH B 58 358 61 HOH HOH . H 5 HOH B 59 359 1 HOH HOH . H 5 HOH B 60 360 9 HOH HOH . H 5 HOH B 61 361 156 HOH HOH . H 5 HOH B 62 362 68 HOH HOH . H 5 HOH B 63 363 176 HOH HOH . H 5 HOH B 64 364 124 HOH HOH . H 5 HOH B 65 365 52 HOH HOH . H 5 HOH B 66 366 249 HOH HOH . H 5 HOH B 67 367 87 HOH HOH . H 5 HOH B 68 368 141 HOH HOH . H 5 HOH B 69 369 16 HOH HOH . H 5 HOH B 70 370 98 HOH HOH . H 5 HOH B 71 371 31 HOH HOH . H 5 HOH B 72 372 106 HOH HOH . H 5 HOH B 73 373 42 HOH HOH . H 5 HOH B 74 374 179 HOH HOH . H 5 HOH B 75 375 79 HOH HOH . H 5 HOH B 76 376 28 HOH HOH . H 5 HOH B 77 377 237 HOH HOH . H 5 HOH B 78 378 127 HOH HOH . H 5 HOH B 79 379 209 HOH HOH . H 5 HOH B 80 380 173 HOH HOH . H 5 HOH B 81 381 37 HOH HOH . H 5 HOH B 82 382 77 HOH HOH . H 5 HOH B 83 383 211 HOH HOH . H 5 HOH B 84 384 181 HOH HOH . H 5 HOH B 85 385 135 HOH HOH . H 5 HOH B 86 386 253 HOH HOH . H 5 HOH B 87 387 234 HOH HOH . H 5 HOH B 88 388 213 HOH HOH . H 5 HOH B 89 389 246 HOH HOH . H 5 HOH B 90 390 33 HOH HOH . H 5 HOH B 91 391 196 HOH HOH . H 5 HOH B 92 392 235 HOH HOH . H 5 HOH B 93 393 43 HOH HOH . H 5 HOH B 94 394 51 HOH HOH . H 5 HOH B 95 395 232 HOH HOH . H 5 HOH B 96 396 32 HOH HOH . H 5 HOH B 97 397 20 HOH HOH . H 5 HOH B 98 398 64 HOH HOH . H 5 HOH B 99 399 260 HOH HOH . H 5 HOH B 100 400 21 HOH HOH . H 5 HOH B 101 401 50 HOH HOH . H 5 HOH B 102 402 12 HOH HOH . H 5 HOH B 103 403 195 HOH HOH . H 5 HOH B 104 404 205 HOH HOH . H 5 HOH B 105 405 169 HOH HOH . H 5 HOH B 106 406 65 HOH HOH . H 5 HOH B 107 407 231 HOH HOH . H 5 HOH B 108 408 82 HOH HOH . H 5 HOH B 109 409 84 HOH HOH . H 5 HOH B 110 410 83 HOH HOH . H 5 HOH B 111 411 92 HOH HOH . H 5 HOH B 112 412 225 HOH HOH . H 5 HOH B 113 413 73 HOH HOH . H 5 HOH B 114 414 239 HOH HOH . H 5 HOH B 115 415 27 HOH HOH . H 5 HOH B 116 416 18 HOH HOH . H 5 HOH B 117 417 236 HOH HOH . H 5 HOH B 118 418 229 HOH HOH . H 5 HOH B 119 419 58 HOH HOH . H 5 HOH B 120 420 152 HOH HOH . H 5 HOH B 121 421 70 HOH HOH . H 5 HOH B 122 422 199 HOH HOH . H 5 HOH B 123 423 174 HOH HOH . H 5 HOH B 124 424 137 HOH HOH . H 5 HOH B 125 425 118 HOH HOH . H 5 HOH B 126 426 242 HOH HOH . H 5 HOH B 127 427 238 HOH HOH . H 5 HOH B 128 428 120 HOH HOH . H 5 HOH B 129 429 107 HOH HOH . H 5 HOH B 130 430 207 HOH HOH . H 5 HOH B 131 431 95 HOH HOH . H 5 HOH B 132 432 165 HOH HOH . H 5 HOH B 133 433 228 HOH HOH . H 5 HOH B 134 434 134 HOH HOH . H 5 HOH B 135 435 163 HOH HOH . H 5 HOH B 136 436 136 HOH HOH . H 5 HOH B 137 437 167 HOH HOH . H 5 HOH B 138 438 69 HOH HOH . H 5 HOH B 139 439 96 HOH HOH . H 5 HOH B 140 440 114 HOH HOH . H 5 HOH B 141 441 101 HOH HOH . H 5 HOH B 142 442 67 HOH HOH . H 5 HOH B 143 443 74 HOH HOH . H 5 HOH B 144 444 144 HOH HOH . H 5 HOH B 145 445 257 HOH HOH . H 5 HOH B 146 446 128 HOH HOH . H 5 HOH B 147 447 183 HOH HOH . H 5 HOH B 148 448 81 HOH HOH . H 5 HOH B 149 449 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . C . D 3 -27.741 3.835 6.774 0.33 23.64 ? C1 EDO 202 B 1 HETATM 2 O O1 EDO . C . D 3 -27.6 2.792 5.805 0.33 24.55 ? O1 EDO 202 B 1 HETATM 3 C C2 EDO . C . D 3 -28.45 3.322 8.019 0.33 23.62 ? C2 EDO 202 B 1 HETATM 4 O O2 EDO . C . D 3 -27.465 3.037 9.015 0.33 20.67 ? O2 EDO 202 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #