data_5PRF # _model_server_result.job_id FNRTgk-5p0wm-tsm6xAvdg _model_server_result.datetime_utc '2024-12-28 20:17:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5prf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5PRF # _exptl.entry_id 5PRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5PRF _cell.length_a 55.247 _cell.length_b 56.433 _cell.length_c 101.982 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 108 A LYS 108 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc2 H O HOH . A HOH 330 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc3 H O HOH . A HOH 373 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc4 B O MET 107 B MET 107 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc5 B O ASN 110 B ASN 110 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5PRF _atom_sites.fract_transf_matrix[1][1] 0.018101 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 201 1 EDO EDO . D 2 EDO A 1 202 2 EDO EDO . E 3 NA B 1 201 1 NA NA . F 2 EDO B 1 202 3 EDO EDO . G 2 EDO B 1 203 4 EDO EDO . H 4 HOH A 1 301 224 HOH HOH . H 4 HOH A 2 302 240 HOH HOH . H 4 HOH A 3 303 38 HOH HOH . H 4 HOH A 4 304 203 HOH HOH . H 4 HOH A 5 305 105 HOH HOH . H 4 HOH A 6 306 100 HOH HOH . H 4 HOH A 7 307 115 HOH HOH . H 4 HOH A 8 308 201 HOH HOH . H 4 HOH A 9 309 13 HOH HOH . H 4 HOH A 10 310 56 HOH HOH . H 4 HOH A 11 311 243 HOH HOH . H 4 HOH A 12 312 226 HOH HOH . H 4 HOH A 13 313 215 HOH HOH . H 4 HOH A 14 314 29 HOH HOH . H 4 HOH A 15 315 219 HOH HOH . H 4 HOH A 16 316 40 HOH HOH . H 4 HOH A 17 317 191 HOH HOH . H 4 HOH A 18 318 245 HOH HOH . H 4 HOH A 19 319 233 HOH HOH . H 4 HOH A 20 320 161 HOH HOH . H 4 HOH A 21 321 250 HOH HOH . H 4 HOH A 22 322 45 HOH HOH . H 4 HOH A 23 323 180 HOH HOH . H 4 HOH A 24 324 103 HOH HOH . H 4 HOH A 25 325 55 HOH HOH . H 4 HOH A 26 326 145 HOH HOH . H 4 HOH A 27 327 14 HOH HOH . H 4 HOH A 28 328 108 HOH HOH . H 4 HOH A 29 329 216 HOH HOH . H 4 HOH A 30 330 218 HOH HOH . H 4 HOH A 31 331 172 HOH HOH . H 4 HOH A 32 332 139 HOH HOH . H 4 HOH A 33 333 142 HOH HOH . H 4 HOH A 34 334 86 HOH HOH . H 4 HOH A 35 335 112 HOH HOH . H 4 HOH A 36 336 166 HOH HOH . H 4 HOH A 37 337 44 HOH HOH . H 4 HOH A 38 338 190 HOH HOH . H 4 HOH A 39 339 57 HOH HOH . H 4 HOH A 40 340 193 HOH HOH . H 4 HOH A 41 341 244 HOH HOH . H 4 HOH A 42 342 41 HOH HOH . H 4 HOH A 43 343 121 HOH HOH . H 4 HOH A 44 344 116 HOH HOH . H 4 HOH A 45 345 187 HOH HOH . H 4 HOH A 46 346 104 HOH HOH . H 4 HOH A 47 347 59 HOH HOH . H 4 HOH A 48 348 25 HOH HOH . H 4 HOH A 49 349 48 HOH HOH . H 4 HOH A 50 350 93 HOH HOH . H 4 HOH A 51 351 23 HOH HOH . H 4 HOH A 52 352 106 HOH HOH . H 4 HOH A 53 353 77 HOH HOH . H 4 HOH A 54 354 227 HOH HOH . H 4 HOH A 55 355 223 HOH HOH . H 4 HOH A 56 356 16 HOH HOH . H 4 HOH A 57 357 3 HOH HOH . H 4 HOH A 58 358 151 HOH HOH . H 4 HOH A 59 359 148 HOH HOH . H 4 HOH A 60 360 8 HOH HOH . H 4 HOH A 61 361 19 HOH HOH . H 4 HOH A 62 362 76 HOH HOH . H 4 HOH A 63 363 75 HOH HOH . H 4 HOH A 64 364 102 HOH HOH . H 4 HOH A 65 365 24 HOH HOH . H 4 HOH A 66 366 30 HOH HOH . H 4 HOH A 67 367 197 HOH HOH . H 4 HOH A 68 368 192 HOH HOH . H 4 HOH A 69 369 117 HOH HOH . H 4 HOH A 70 370 54 HOH HOH . H 4 HOH A 71 371 258 HOH HOH . H 4 HOH A 72 372 147 HOH HOH . H 4 HOH A 73 373 22 HOH HOH . H 4 HOH A 74 374 255 HOH HOH . H 4 HOH A 75 375 15 HOH HOH . H 4 HOH A 76 376 80 HOH HOH . H 4 HOH A 77 377 5 HOH HOH . H 4 HOH A 78 378 157 HOH HOH . H 4 HOH A 79 379 118 HOH HOH . H 4 HOH A 80 380 35 HOH HOH . H 4 HOH A 81 381 122 HOH HOH . H 4 HOH A 82 382 182 HOH HOH . H 4 HOH A 83 383 222 HOH HOH . H 4 HOH A 84 384 178 HOH HOH . H 4 HOH A 85 385 168 HOH HOH . H 4 HOH A 86 386 171 HOH HOH . H 4 HOH A 87 387 49 HOH HOH . H 4 HOH A 88 388 164 HOH HOH . H 4 HOH A 89 389 154 HOH HOH . H 4 HOH A 90 390 221 HOH HOH . H 4 HOH A 91 391 119 HOH HOH . H 4 HOH A 92 392 198 HOH HOH . H 4 HOH A 93 393 200 HOH HOH . H 4 HOH A 94 394 220 HOH HOH . H 4 HOH A 95 395 125 HOH HOH . H 4 HOH A 96 396 170 HOH HOH . H 4 HOH A 97 397 66 HOH HOH . H 4 HOH A 98 398 60 HOH HOH . H 4 HOH A 99 399 113 HOH HOH . H 4 HOH A 100 400 155 HOH HOH . H 4 HOH A 101 401 46 HOH HOH . H 4 HOH A 102 402 177 HOH HOH . H 4 HOH A 103 403 53 HOH HOH . H 4 HOH A 104 404 184 HOH HOH . H 4 HOH A 105 405 217 HOH HOH . H 4 HOH A 106 406 185 HOH HOH . H 4 HOH A 107 407 63 HOH HOH . H 4 HOH A 108 408 90 HOH HOH . H 4 HOH A 109 409 85 HOH HOH . H 4 HOH A 110 410 194 HOH HOH . H 4 HOH A 111 411 149 HOH HOH . I 4 HOH B 1 301 241 HOH HOH . I 4 HOH B 2 302 251 HOH HOH . I 4 HOH B 3 303 254 HOH HOH . I 4 HOH B 4 304 130 HOH HOH . I 4 HOH B 5 305 72 HOH HOH . I 4 HOH B 6 306 214 HOH HOH . I 4 HOH B 7 307 146 HOH HOH . I 4 HOH B 8 308 97 HOH HOH . I 4 HOH B 9 309 212 HOH HOH . I 4 HOH B 10 310 94 HOH HOH . I 4 HOH B 11 311 7 HOH HOH . I 4 HOH B 12 312 209 HOH HOH . I 4 HOH B 13 313 206 HOH HOH . I 4 HOH B 14 314 123 HOH HOH . I 4 HOH B 15 315 162 HOH HOH . I 4 HOH B 16 316 150 HOH HOH . I 4 HOH B 17 317 91 HOH HOH . I 4 HOH B 18 318 208 HOH HOH . I 4 HOH B 19 319 210 HOH HOH . I 4 HOH B 20 320 62 HOH HOH . I 4 HOH B 21 321 160 HOH HOH . I 4 HOH B 22 322 109 HOH HOH . I 4 HOH B 23 323 36 HOH HOH . I 4 HOH B 24 324 188 HOH HOH . I 4 HOH B 25 325 26 HOH HOH . I 4 HOH B 26 326 4 HOH HOH . I 4 HOH B 27 327 249 HOH HOH . I 4 HOH B 28 328 2 HOH HOH . I 4 HOH B 29 329 230 HOH HOH . I 4 HOH B 30 330 9 HOH HOH . I 4 HOH B 31 331 140 HOH HOH . I 4 HOH B 32 332 252 HOH HOH . I 4 HOH B 33 333 28 HOH HOH . I 4 HOH B 34 334 78 HOH HOH . I 4 HOH B 35 335 99 HOH HOH . I 4 HOH B 36 336 158 HOH HOH . I 4 HOH B 37 337 6 HOH HOH . I 4 HOH B 38 338 34 HOH HOH . I 4 HOH B 39 339 141 HOH HOH . I 4 HOH B 40 340 143 HOH HOH . I 4 HOH B 41 341 259 HOH HOH . I 4 HOH B 42 342 247 HOH HOH . I 4 HOH B 43 343 159 HOH HOH . I 4 HOH B 44 344 126 HOH HOH . I 4 HOH B 45 345 10 HOH HOH . I 4 HOH B 46 346 88 HOH HOH . I 4 HOH B 47 347 68 HOH HOH . I 4 HOH B 48 348 124 HOH HOH . I 4 HOH B 49 349 133 HOH HOH . I 4 HOH B 50 350 110 HOH HOH . I 4 HOH B 51 351 248 HOH HOH . I 4 HOH B 52 352 173 HOH HOH . I 4 HOH B 53 353 89 HOH HOH . I 4 HOH B 54 354 11 HOH HOH . I 4 HOH B 55 355 196 HOH HOH . I 4 HOH B 56 356 87 HOH HOH . I 4 HOH B 57 357 204 HOH HOH . I 4 HOH B 58 358 131 HOH HOH . I 4 HOH B 59 359 1 HOH HOH . I 4 HOH B 60 360 61 HOH HOH . I 4 HOH B 61 361 71 HOH HOH . I 4 HOH B 62 362 39 HOH HOH . I 4 HOH B 63 363 181 HOH HOH . I 4 HOH B 64 364 98 HOH HOH . I 4 HOH B 65 365 156 HOH HOH . I 4 HOH B 66 366 79 HOH HOH . I 4 HOH B 67 367 179 HOH HOH . I 4 HOH B 68 368 127 HOH HOH . I 4 HOH B 69 369 12 HOH HOH . I 4 HOH B 70 370 51 HOH HOH . I 4 HOH B 71 371 211 HOH HOH . I 4 HOH B 72 372 47 HOH HOH . I 4 HOH B 73 373 253 HOH HOH . I 4 HOH B 74 374 232 HOH HOH . I 4 HOH B 75 375 17 HOH HOH . I 4 HOH B 76 376 84 HOH HOH . I 4 HOH B 77 377 256 HOH HOH . I 4 HOH B 78 378 52 HOH HOH . I 4 HOH B 79 379 129 HOH HOH . I 4 HOH B 80 380 58 HOH HOH . I 4 HOH B 81 381 237 HOH HOH . I 4 HOH B 82 382 43 HOH HOH . I 4 HOH B 83 383 235 HOH HOH . I 4 HOH B 84 384 21 HOH HOH . I 4 HOH B 85 385 234 HOH HOH . I 4 HOH B 86 386 37 HOH HOH . I 4 HOH B 87 387 186 HOH HOH . I 4 HOH B 88 388 65 HOH HOH . I 4 HOH B 89 389 246 HOH HOH . I 4 HOH B 90 390 236 HOH HOH . I 4 HOH B 91 391 189 HOH HOH . I 4 HOH B 92 392 64 HOH HOH . I 4 HOH B 93 393 20 HOH HOH . I 4 HOH B 94 394 213 HOH HOH . I 4 HOH B 95 395 82 HOH HOH . I 4 HOH B 96 396 195 HOH HOH . I 4 HOH B 97 397 92 HOH HOH . I 4 HOH B 98 398 83 HOH HOH . I 4 HOH B 99 399 205 HOH HOH . I 4 HOH B 100 400 242 HOH HOH . I 4 HOH B 101 401 202 HOH HOH . I 4 HOH B 102 402 138 HOH HOH . I 4 HOH B 103 403 42 HOH HOH . I 4 HOH B 104 404 32 HOH HOH . I 4 HOH B 105 405 31 HOH HOH . I 4 HOH B 106 406 135 HOH HOH . I 4 HOH B 107 407 176 HOH HOH . I 4 HOH B 108 408 239 HOH HOH . I 4 HOH B 109 409 174 HOH HOH . I 4 HOH B 110 410 231 HOH HOH . I 4 HOH B 111 411 73 HOH HOH . I 4 HOH B 112 412 70 HOH HOH . I 4 HOH B 113 413 18 HOH HOH . I 4 HOH B 114 414 27 HOH HOH . I 4 HOH B 115 415 33 HOH HOH . I 4 HOH B 116 416 169 HOH HOH . I 4 HOH B 117 417 120 HOH HOH . I 4 HOH B 118 418 50 HOH HOH . I 4 HOH B 119 419 225 HOH HOH . I 4 HOH B 120 420 152 HOH HOH . I 4 HOH B 121 421 137 HOH HOH . I 4 HOH B 122 422 165 HOH HOH . I 4 HOH B 123 423 229 HOH HOH . I 4 HOH B 124 424 107 HOH HOH . I 4 HOH B 125 425 238 HOH HOH . I 4 HOH B 126 426 199 HOH HOH . I 4 HOH B 127 427 111 HOH HOH . I 4 HOH B 128 428 207 HOH HOH . I 4 HOH B 129 429 167 HOH HOH . I 4 HOH B 130 430 114 HOH HOH . I 4 HOH B 131 431 95 HOH HOH . I 4 HOH B 132 432 228 HOH HOH . I 4 HOH B 133 433 163 HOH HOH . I 4 HOH B 134 434 134 HOH HOH . I 4 HOH B 135 435 153 HOH HOH . I 4 HOH B 136 436 101 HOH HOH . I 4 HOH B 137 437 69 HOH HOH . I 4 HOH B 138 438 96 HOH HOH . I 4 HOH B 139 439 136 HOH HOH . I 4 HOH B 140 440 67 HOH HOH . I 4 HOH B 141 441 74 HOH HOH . I 4 HOH B 142 442 144 HOH HOH . I 4 HOH B 143 443 183 HOH HOH . I 4 HOH B 144 444 257 HOH HOH . I 4 HOH B 145 445 128 HOH HOH . I 4 HOH B 146 446 81 HOH HOH . I 4 HOH B 147 447 175 HOH HOH . I 4 HOH B 148 448 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 -9.345 12.471 1.413 1 39.34 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . C 2 -9.676 11.057 1.262 1 38.63 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . C 2 -9.483 13.135 0.053 1 37.76 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . C 2 -10.844 13.032 -0.4 1 35.81 ? O2 EDO 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #