data_5PRN # _model_server_result.job_id 5HuwZYVgovPKJ8tXjgDZDw _model_server_result.datetime_utc '2024-11-21 14:32:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5prn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":290}' # _entry.id 5PRN # _exptl.entry_id 5PRN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.438 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5PRN _cell.length_a 104.6 _cell.length_b 104.6 _cell.length_c 124.66 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PRN _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 52.3 90.586257 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -52.3 90.586257 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C16 H34 O5' _chem_comp.formula_weight 306.438 _chem_comp.id C8E _chem_comp.mon_nstd_flag . _chem_comp.name (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C8E sing 70 n n C1 H11 C8E sing 71 n n C1 H12 C8E sing 72 n n C1 H13 C8E sing 73 n n C2 C3 C8E sing 74 n n C2 H21 C8E sing 75 n n C2 H22 C8E sing 76 n n C3 C4 C8E sing 77 n n C3 H31 C8E sing 78 n n C3 H32 C8E sing 79 n n C4 C5 C8E sing 80 n n C4 H41 C8E sing 81 n n C4 H42 C8E sing 82 n n C5 C6 C8E sing 83 n n C5 H51 C8E sing 84 n n C5 H52 C8E sing 85 n n C6 C7 C8E sing 86 n n C6 H61 C8E sing 87 n n C6 H62 C8E sing 88 n n C7 C8 C8E sing 89 n n C7 H71 C8E sing 90 n n C7 H72 C8E sing 91 n n C8 O9 C8E sing 92 n n C8 H81 C8E sing 93 n n C8 H82 C8E sing 94 n n O9 C10 C8E sing 95 n n C10 C11 C8E sing 96 n n C10 H101 C8E sing 97 n n C10 H102 C8E sing 98 n n C11 O12 C8E sing 99 n n C11 H111 C8E sing 100 n n C11 H112 C8E sing 101 n n O12 C13 C8E sing 102 n n C13 C14 C8E sing 103 n n C13 H131 C8E sing 104 n n C13 H132 C8E sing 105 n n C14 O15 C8E sing 106 n n C14 H141 C8E sing 107 n n C14 H142 C8E sing 108 n n O15 C16 C8E sing 109 n n C16 C17 C8E sing 110 n n C16 H161 C8E sing 111 n n C16 H162 C8E sing 112 n n C17 O18 C8E sing 113 n n C17 H171 C8E sing 114 n n C17 H172 C8E sing 115 n n O18 C19 C8E sing 116 n n C19 C20 C8E sing 117 n n C19 H191 C8E sing 118 n n C19 H192 C8E sing 119 n n C20 O21 C8E sing 120 n n C20 H201 C8E sing 121 n n C20 H202 C8E sing 122 n n O21 HO2 C8E sing 123 n n # _atom_sites.entry_id 5PRN _atom_sites.fract_transf_matrix[1][1] 0.00956 _atom_sites.fract_transf_matrix[1][2] 0.00552 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C8E A 1 290 1 C8E C8E . C 2 C8E A 1 291 2 C8E C8E . D 2 C8E A 1 292 3 C8E C8E . E 3 HOH A 1 293 1 HOH HOH . E 3 HOH A 2 294 2 HOH HOH . E 3 HOH A 3 295 3 HOH HOH . E 3 HOH A 4 296 4 HOH HOH . E 3 HOH A 5 297 5 HOH HOH . E 3 HOH A 6 298 6 HOH HOH . E 3 HOH A 7 299 7 HOH HOH . E 3 HOH A 8 300 8 HOH HOH . E 3 HOH A 9 301 10 HOH HOH . E 3 HOH A 10 302 11 HOH HOH . E 3 HOH A 11 303 12 HOH HOH . E 3 HOH A 12 304 13 HOH HOH . E 3 HOH A 13 305 15 HOH HOH . E 3 HOH A 14 306 16 HOH HOH . E 3 HOH A 15 307 17 HOH HOH . E 3 HOH A 16 308 19 HOH HOH . E 3 HOH A 17 309 20 HOH HOH . E 3 HOH A 18 310 21 HOH HOH . E 3 HOH A 19 311 22 HOH HOH . E 3 HOH A 20 312 23 HOH HOH . E 3 HOH A 21 313 24 HOH HOH . E 3 HOH A 22 314 25 HOH HOH . E 3 HOH A 23 315 26 HOH HOH . E 3 HOH A 24 316 27 HOH HOH . E 3 HOH A 25 317 28 HOH HOH . E 3 HOH A 26 318 29 HOH HOH . E 3 HOH A 27 319 30 HOH HOH . E 3 HOH A 28 320 31 HOH HOH . E 3 HOH A 29 321 32 HOH HOH . E 3 HOH A 30 322 33 HOH HOH . E 3 HOH A 31 323 34 HOH HOH . E 3 HOH A 32 324 35 HOH HOH . E 3 HOH A 33 325 36 HOH HOH . E 3 HOH A 34 326 37 HOH HOH . E 3 HOH A 35 327 38 HOH HOH . E 3 HOH A 36 328 40 HOH HOH . E 3 HOH A 37 329 41 HOH HOH . E 3 HOH A 38 330 42 HOH HOH . E 3 HOH A 39 331 43 HOH HOH . E 3 HOH A 40 332 44 HOH HOH . E 3 HOH A 41 333 45 HOH HOH . E 3 HOH A 42 334 46 HOH HOH . E 3 HOH A 43 335 47 HOH HOH . E 3 HOH A 44 336 48 HOH HOH . E 3 HOH A 45 337 49 HOH HOH . E 3 HOH A 46 338 50 HOH HOH . E 3 HOH A 47 339 51 HOH HOH . E 3 HOH A 48 340 52 HOH HOH . E 3 HOH A 49 341 53 HOH HOH . E 3 HOH A 50 342 54 HOH HOH . E 3 HOH A 51 343 55 HOH HOH . E 3 HOH A 52 344 56 HOH HOH . E 3 HOH A 53 345 57 HOH HOH . E 3 HOH A 54 346 58 HOH HOH . E 3 HOH A 55 347 59 HOH HOH . E 3 HOH A 56 348 60 HOH HOH . E 3 HOH A 57 349 61 HOH HOH . E 3 HOH A 58 350 62 HOH HOH . E 3 HOH A 59 351 63 HOH HOH . E 3 HOH A 60 352 64 HOH HOH . E 3 HOH A 61 353 65 HOH HOH . E 3 HOH A 62 354 66 HOH HOH . E 3 HOH A 63 355 67 HOH HOH . E 3 HOH A 64 356 69 HOH HOH . E 3 HOH A 65 357 70 HOH HOH . E 3 HOH A 66 358 71 HOH HOH . E 3 HOH A 67 359 72 HOH HOH . E 3 HOH A 68 360 73 HOH HOH . E 3 HOH A 69 361 74 HOH HOH . E 3 HOH A 70 362 75 HOH HOH . E 3 HOH A 71 363 76 HOH HOH . E 3 HOH A 72 364 77 HOH HOH . E 3 HOH A 73 365 78 HOH HOH . E 3 HOH A 74 366 79 HOH HOH . E 3 HOH A 75 367 80 HOH HOH . E 3 HOH A 76 368 81 HOH HOH . E 3 HOH A 77 369 82 HOH HOH . E 3 HOH A 78 370 83 HOH HOH . E 3 HOH A 79 371 84 HOH HOH . E 3 HOH A 80 372 85 HOH HOH . E 3 HOH A 81 373 86 HOH HOH . E 3 HOH A 82 374 87 HOH HOH . E 3 HOH A 83 375 88 HOH HOH . E 3 HOH A 84 376 89 HOH HOH . E 3 HOH A 85 377 90 HOH HOH . E 3 HOH A 86 378 91 HOH HOH . E 3 HOH A 87 379 92 HOH HOH . E 3 HOH A 88 380 93 HOH HOH . E 3 HOH A 89 381 94 HOH HOH . E 3 HOH A 90 382 95 HOH HOH . E 3 HOH A 91 383 96 HOH HOH . E 3 HOH A 92 384 98 HOH HOH . E 3 HOH A 93 385 99 HOH HOH . E 3 HOH A 94 386 100 HOH HOH . E 3 HOH A 95 387 101 HOH HOH . E 3 HOH A 96 388 102 HOH HOH . E 3 HOH A 97 389 103 HOH HOH . E 3 HOH A 98 390 104 HOH HOH . E 3 HOH A 99 391 105 HOH HOH . E 3 HOH A 100 392 107 HOH HOH . E 3 HOH A 101 393 108 HOH HOH . E 3 HOH A 102 394 109 HOH HOH . E 3 HOH A 103 395 110 HOH HOH . E 3 HOH A 104 396 111 HOH HOH . E 3 HOH A 105 397 112 HOH HOH . E 3 HOH A 106 398 113 HOH HOH . E 3 HOH A 107 399 114 HOH HOH . E 3 HOH A 108 400 115 HOH HOH . E 3 HOH A 109 401 116 HOH HOH . E 3 HOH A 110 402 117 HOH HOH . E 3 HOH A 111 403 118 HOH HOH . E 3 HOH A 112 404 119 HOH HOH . E 3 HOH A 113 405 120 HOH HOH . E 3 HOH A 114 406 121 HOH HOH . E 3 HOH A 115 407 122 HOH HOH . E 3 HOH A 116 408 123 HOH HOH . E 3 HOH A 117 409 124 HOH HOH . E 3 HOH A 118 410 125 HOH HOH . E 3 HOH A 119 411 126 HOH HOH . E 3 HOH A 120 412 127 HOH HOH . E 3 HOH A 121 413 128 HOH HOH . E 3 HOH A 122 414 129 HOH HOH . E 3 HOH A 123 415 130 HOH HOH . E 3 HOH A 124 416 131 HOH HOH . E 3 HOH A 125 417 132 HOH HOH . E 3 HOH A 126 418 133 HOH HOH . E 3 HOH A 127 419 134 HOH HOH . E 3 HOH A 128 420 135 HOH HOH . E 3 HOH A 129 421 136 HOH HOH . E 3 HOH A 130 422 137 HOH HOH . E 3 HOH A 131 423 138 HOH HOH . E 3 HOH A 132 424 139 HOH HOH . E 3 HOH A 133 425 140 HOH HOH . E 3 HOH A 134 426 141 HOH HOH . E 3 HOH A 135 427 142 HOH HOH . E 3 HOH A 136 428 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C8E . . . B 2 4.341 59.847 44.504 1 41.17 ? C1 C8E 290 A 1 HETATM 2 C C2 C8E . . . B 2 3.245 59.223 43.791 1 41.88 ? C2 C8E 290 A 1 HETATM 3 C C3 C8E . . . B 2 2.025 59.094 44.566 1 42.58 ? C3 C8E 290 A 1 HETATM 4 C C4 C8E . . . B 2 2.091 57.871 45.36 1 42.99 ? C4 C8E 290 A 1 HETATM 5 C C5 C8E . . . B 2 2.066 58.354 46.772 1 44.74 ? C5 C8E 290 A 1 HETATM 6 C C6 C8E . . . B 2 0.905 57.857 47.433 1 45.53 ? C6 C8E 290 A 1 HETATM 7 C C7 C8E . . . B 2 1.344 57.964 48.807 1 47.3 ? C7 C8E 290 A 1 HETATM 8 C C8 C8E . . . B 2 0.214 57.682 49.69 1 50.55 ? C8 C8E 290 A 1 HETATM 9 O O9 C8E . . . B 2 0.345 57.266 51.031 1 52.87 ? O9 C8E 290 A 1 HETATM 10 C C10 C8E . . . B 2 0.974 58.09 51.976 1 56.89 ? C10 C8E 290 A 1 HETATM 11 C C11 C8E . . . B 2 1.173 57.298 53.244 1 60.33 ? C11 C8E 290 A 1 HETATM 12 O O12 C8E . . . B 2 -0.088 56.721 53.73 1 63.57 ? O12 C8E 290 A 1 HETATM 13 C C13 C8E . . . B 2 -0.368 55.305 53.446 1 65.17 ? C13 C8E 290 A 1 HETATM 14 C C14 C8E . . . B 2 -1.345 54.798 52.342 1 66.22 ? C14 C8E 290 A 1 HETATM 15 O O15 C8E . . . B 2 -2.212 53.617 52.315 1 67.3 ? O15 C8E 290 A 1 HETATM 16 C C16 C8E . . . B 2 -1.693 52.585 51.467 1 67.07 ? C16 C8E 290 A 1 HETATM 17 C C17 C8E . . . B 2 -1.702 52.799 49.939 1 66.12 ? C17 C8E 290 A 1 HETATM 18 O O18 C8E . . . B 2 -1.489 51.79 48.947 1 65.45 ? O18 C8E 290 A 1 HETATM 19 C C19 C8E . . . B 2 -2.267 50.543 49.051 1 65.68 ? C19 C8E 290 A 1 HETATM 20 C C20 C8E . . . B 2 -3.492 50.134 48.138 1 65.42 ? C20 C8E 290 A 1 HETATM 21 O O21 C8E . . . B 2 -3.489 50.593 46.759 1 64.45 ? O21 C8E 290 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 585 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #