data_5PTY
#
_model_server_result.job_id            KtGPMWVsgAS2uxoolKqXJg 
_model_server_result.datetime_utc      '2024-12-23 05:38:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5pty 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    5PTY 
#
_exptl.entry_id    5PTY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5PTY 
_cell.length_a            55.387 
_cell.length_b            56.553 
_cell.length_c            101.727 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5PTY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LYS 108 A LYS 108 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc2 H O HOH . A HOH 330 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc3 H O HOH . A HOH 361 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc4 B O MET 107 B MET 107 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc5 B O ASN 110 B ASN 110 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5PTY 
_atom_sites.fract_transf_matrix[1][1]    0.018055 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017683 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00983 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 201 1 EDO EDO . 
D 2 EDO A 1 202 2 EDO EDO . 
E 3 NA B 1 201 1 NA NA . 
F 2 EDO B 1 202 3 EDO EDO . 
G 2 EDO B 1 203 4 EDO EDO . 
H 4 HOH A 1 301 215 HOH HOH . 
H 4 HOH A 2 302 240 HOH HOH . 
H 4 HOH A 3 303 161 HOH HOH . 
H 4 HOH A 4 304 224 HOH HOH . 
H 4 HOH A 5 305 45 HOH HOH . 
H 4 HOH A 6 306 216 HOH HOH . 
H 4 HOH A 7 307 219 HOH HOH . 
H 4 HOH A 8 308 203 HOH HOH . 
H 4 HOH A 9 309 40 HOH HOH . 
H 4 HOH A 10 310 38 HOH HOH . 
H 4 HOH A 11 311 100 HOH HOH . 
H 4 HOH A 12 312 245 HOH HOH . 
H 4 HOH A 13 313 29 HOH HOH . 
H 4 HOH A 14 314 233 HOH HOH . 
H 4 HOH A 15 315 115 HOH HOH . 
H 4 HOH A 16 316 191 HOH HOH . 
H 4 HOH A 17 317 201 HOH HOH . 
H 4 HOH A 18 318 250 HOH HOH . 
H 4 HOH A 19 319 86 HOH HOH . 
H 4 HOH A 20 320 180 HOH HOH . 
H 4 HOH A 21 321 56 HOH HOH . 
H 4 HOH A 22 322 41 HOH HOH . 
H 4 HOH A 23 323 110 HOH HOH . 
H 4 HOH A 24 324 59 HOH HOH . 
H 4 HOH A 25 325 108 HOH HOH . 
H 4 HOH A 26 326 243 HOH HOH . 
H 4 HOH A 27 327 116 HOH HOH . 
H 4 HOH A 28 328 226 HOH HOH . 
H 4 HOH A 29 329 138 HOH HOH . 
H 4 HOH A 30 330 218 HOH HOH . 
H 4 HOH A 31 331 14 HOH HOH . 
H 4 HOH A 32 332 77 HOH HOH . 
H 4 HOH A 33 333 104 HOH HOH . 
H 4 HOH A 34 334 139 HOH HOH . 
H 4 HOH A 35 335 145 HOH HOH . 
H 4 HOH A 36 336 44 HOH HOH . 
H 4 HOH A 37 337 190 HOH HOH . 
H 4 HOH A 38 338 244 HOH HOH . 
H 4 HOH A 39 339 166 HOH HOH . 
H 4 HOH A 40 340 55 HOH HOH . 
H 4 HOH A 41 341 23 HOH HOH . 
H 4 HOH A 42 342 13 HOH HOH . 
H 4 HOH A 43 343 57 HOH HOH . 
H 4 HOH A 44 344 105 HOH HOH . 
H 4 HOH A 45 345 54 HOH HOH . 
H 4 HOH A 46 346 172 HOH HOH . 
H 4 HOH A 47 347 25 HOH HOH . 
H 4 HOH A 48 348 106 HOH HOH . 
H 4 HOH A 49 349 102 HOH HOH . 
H 4 HOH A 50 350 48 HOH HOH . 
H 4 HOH A 51 351 193 HOH HOH . 
H 4 HOH A 52 352 75 HOH HOH . 
H 4 HOH A 53 353 168 HOH HOH . 
H 4 HOH A 54 354 122 HOH HOH . 
H 4 HOH A 55 355 103 HOH HOH . 
H 4 HOH A 56 356 151 HOH HOH . 
H 4 HOH A 57 357 93 HOH HOH . 
H 4 HOH A 58 358 80 HOH HOH . 
H 4 HOH A 59 359 76 HOH HOH . 
H 4 HOH A 60 360 192 HOH HOH . 
H 4 HOH A 61 361 22 HOH HOH . 
H 4 HOH A 62 362 148 HOH HOH . 
H 4 HOH A 63 363 3 HOH HOH . 
H 4 HOH A 64 364 227 HOH HOH . 
H 4 HOH A 65 365 223 HOH HOH . 
H 4 HOH A 66 366 121 HOH HOH . 
H 4 HOH A 67 367 187 HOH HOH . 
H 4 HOH A 68 368 8 HOH HOH . 
H 4 HOH A 69 369 62 HOH HOH . 
H 4 HOH A 70 370 178 HOH HOH . 
H 4 HOH A 71 371 231 HOH HOH . 
H 4 HOH A 72 372 35 HOH HOH . 
H 4 HOH A 73 373 258 HOH HOH . 
H 4 HOH A 74 374 255 HOH HOH . 
H 4 HOH A 75 375 19 HOH HOH . 
H 4 HOH A 76 376 142 HOH HOH . 
H 4 HOH A 77 377 197 HOH HOH . 
H 4 HOH A 78 378 15 HOH HOH . 
H 4 HOH A 79 379 24 HOH HOH . 
H 4 HOH A 80 380 30 HOH HOH . 
H 4 HOH A 81 381 117 HOH HOH . 
H 4 HOH A 82 382 157 HOH HOH . 
H 4 HOH A 83 383 147 HOH HOH . 
H 4 HOH A 84 384 182 HOH HOH . 
H 4 HOH A 85 385 222 HOH HOH . 
H 4 HOH A 86 386 5 HOH HOH . 
H 4 HOH A 87 387 118 HOH HOH . 
H 4 HOH A 88 388 171 HOH HOH . 
H 4 HOH A 89 389 154 HOH HOH . 
H 4 HOH A 90 390 200 HOH HOH . 
H 4 HOH A 91 391 164 HOH HOH . 
H 4 HOH A 92 392 198 HOH HOH . 
H 4 HOH A 93 393 220 HOH HOH . 
H 4 HOH A 94 394 119 HOH HOH . 
H 4 HOH A 95 395 49 HOH HOH . 
H 4 HOH A 96 396 221 HOH HOH . 
H 4 HOH A 97 397 125 HOH HOH . 
H 4 HOH A 98 398 155 HOH HOH . 
H 4 HOH A 99 399 170 HOH HOH . 
H 4 HOH A 100 400 60 HOH HOH . 
H 4 HOH A 101 401 66 HOH HOH . 
H 4 HOH A 102 402 46 HOH HOH . 
H 4 HOH A 103 403 113 HOH HOH . 
H 4 HOH A 104 404 217 HOH HOH . 
H 4 HOH A 105 405 53 HOH HOH . 
H 4 HOH A 106 406 185 HOH HOH . 
H 4 HOH A 107 407 184 HOH HOH . 
H 4 HOH A 108 408 63 HOH HOH . 
H 4 HOH A 109 409 90 HOH HOH . 
H 4 HOH A 110 410 177 HOH HOH . 
H 4 HOH A 111 411 85 HOH HOH . 
H 4 HOH A 112 412 194 HOH HOH . 
H 4 HOH A 113 413 149 HOH HOH . 
I 4 HOH B 1 301 241 HOH HOH . 
I 4 HOH B 2 302 130 HOH HOH . 
I 4 HOH B 3 303 206 HOH HOH . 
I 4 HOH B 4 304 123 HOH HOH . 
I 4 HOH B 5 305 72 HOH HOH . 
I 4 HOH B 6 306 254 HOH HOH . 
I 4 HOH B 7 307 210 HOH HOH . 
I 4 HOH B 8 308 146 HOH HOH . 
I 4 HOH B 9 309 88 HOH HOH . 
I 4 HOH B 10 310 252 HOH HOH . 
I 4 HOH B 11 311 214 HOH HOH . 
I 4 HOH B 12 312 10 HOH HOH . 
I 4 HOH B 13 313 249 HOH HOH . 
I 4 HOH B 14 314 7 HOH HOH . 
I 4 HOH B 15 315 109 HOH HOH . 
I 4 HOH B 16 316 251 HOH HOH . 
I 4 HOH B 17 317 91 HOH HOH . 
I 4 HOH B 18 318 36 HOH HOH . 
I 4 HOH B 19 319 97 HOH HOH . 
I 4 HOH B 20 320 160 HOH HOH . 
I 4 HOH B 21 321 186 HOH HOH . 
I 4 HOH B 22 322 2 HOH HOH . 
I 4 HOH B 23 323 94 HOH HOH . 
I 4 HOH B 24 324 1 HOH HOH . 
I 4 HOH B 25 325 212 HOH HOH . 
I 4 HOH B 26 326 28 HOH HOH . 
I 4 HOH B 27 327 47 HOH HOH . 
I 4 HOH B 28 328 150 HOH HOH . 
I 4 HOH B 29 329 126 HOH HOH . 
I 4 HOH B 30 330 208 HOH HOH . 
I 4 HOH B 31 331 140 HOH HOH . 
I 4 HOH B 32 332 256 HOH HOH . 
I 4 HOH B 33 333 26 HOH HOH . 
I 4 HOH B 34 334 248 HOH HOH . 
I 4 HOH B 35 335 32 HOH HOH . 
I 4 HOH B 36 336 211 HOH HOH . 
I 4 HOH B 37 337 87 HOH HOH . 
I 4 HOH B 38 338 34 HOH HOH . 
I 4 HOH B 39 339 162 HOH HOH . 
I 4 HOH B 40 340 43 HOH HOH . 
I 4 HOH B 41 341 158 HOH HOH . 
I 4 HOH B 42 342 16 HOH HOH . 
I 4 HOH B 43 343 78 HOH HOH . 
I 4 HOH B 44 344 204 HOH HOH . 
I 4 HOH B 45 345 98 HOH HOH . 
I 4 HOH B 46 346 209 HOH HOH . 
I 4 HOH B 47 347 84 HOH HOH . 
I 4 HOH B 48 348 189 HOH HOH . 
I 4 HOH B 49 349 6 HOH HOH . 
I 4 HOH B 50 350 4 HOH HOH . 
I 4 HOH B 51 351 99 HOH HOH . 
I 4 HOH B 52 352 179 HOH HOH . 
I 4 HOH B 53 353 247 HOH HOH . 
I 4 HOH B 54 354 236 HOH HOH . 
I 4 HOH B 55 355 112 HOH HOH . 
I 4 HOH B 56 356 230 HOH HOH . 
I 4 HOH B 57 357 196 HOH HOH . 
I 4 HOH B 58 358 61 HOH HOH . 
I 4 HOH B 59 359 131 HOH HOH . 
I 4 HOH B 60 360 234 HOH HOH . 
I 4 HOH B 61 361 188 HOH HOH . 
I 4 HOH B 62 362 129 HOH HOH . 
I 4 HOH B 63 363 39 HOH HOH . 
I 4 HOH B 64 364 159 HOH HOH . 
I 4 HOH B 65 365 141 HOH HOH . 
I 4 HOH B 66 366 79 HOH HOH . 
I 4 HOH B 67 367 259 HOH HOH . 
I 4 HOH B 68 368 9 HOH HOH . 
I 4 HOH B 69 369 52 HOH HOH . 
I 4 HOH B 70 370 17 HOH HOH . 
I 4 HOH B 71 371 51 HOH HOH . 
I 4 HOH B 72 372 143 HOH HOH . 
I 4 HOH B 73 373 68 HOH HOH . 
I 4 HOH B 74 374 202 HOH HOH . 
I 4 HOH B 75 375 37 HOH HOH . 
I 4 HOH B 76 376 133 HOH HOH . 
I 4 HOH B 77 377 92 HOH HOH . 
I 4 HOH B 78 378 21 HOH HOH . 
I 4 HOH B 79 379 64 HOH HOH . 
I 4 HOH B 80 380 156 HOH HOH . 
I 4 HOH B 81 381 82 HOH HOH . 
I 4 HOH B 82 382 12 HOH HOH . 
I 4 HOH B 83 383 173 HOH HOH . 
I 4 HOH B 84 384 232 HOH HOH . 
I 4 HOH B 85 385 174 HOH HOH . 
I 4 HOH B 86 386 11 HOH HOH . 
I 4 HOH B 87 387 71 HOH HOH . 
I 4 HOH B 88 388 127 HOH HOH . 
I 4 HOH B 89 389 237 HOH HOH . 
I 4 HOH B 90 390 135 HOH HOH . 
I 4 HOH B 91 391 89 HOH HOH . 
I 4 HOH B 92 392 253 HOH HOH . 
I 4 HOH B 93 393 31 HOH HOH . 
I 4 HOH B 94 394 195 HOH HOH . 
I 4 HOH B 95 395 124 HOH HOH . 
I 4 HOH B 96 396 42 HOH HOH . 
I 4 HOH B 97 397 181 HOH HOH . 
I 4 HOH B 98 398 65 HOH HOH . 
I 4 HOH B 99 399 73 HOH HOH . 
I 4 HOH B 100 400 213 HOH HOH . 
I 4 HOH B 101 401 33 HOH HOH . 
I 4 HOH B 102 402 176 HOH HOH . 
I 4 HOH B 103 403 205 HOH HOH . 
I 4 HOH B 104 404 246 HOH HOH . 
I 4 HOH B 105 405 137 HOH HOH . 
I 4 HOH B 106 406 239 HOH HOH . 
I 4 HOH B 107 407 20 HOH HOH . 
I 4 HOH B 108 408 242 HOH HOH . 
I 4 HOH B 109 409 70 HOH HOH . 
I 4 HOH B 110 410 58 HOH HOH . 
I 4 HOH B 111 411 235 HOH HOH . 
I 4 HOH B 112 412 18 HOH HOH . 
I 4 HOH B 113 413 225 HOH HOH . 
I 4 HOH B 114 414 27 HOH HOH . 
I 4 HOH B 115 415 152 HOH HOH . 
I 4 HOH B 116 416 169 HOH HOH . 
I 4 HOH B 117 417 83 HOH HOH . 
I 4 HOH B 118 418 50 HOH HOH . 
I 4 HOH B 119 419 120 HOH HOH . 
I 4 HOH B 120 420 107 HOH HOH . 
I 4 HOH B 121 421 199 HOH HOH . 
I 4 HOH B 122 422 238 HOH HOH . 
I 4 HOH B 123 423 229 HOH HOH . 
I 4 HOH B 124 424 167 HOH HOH . 
I 4 HOH B 125 425 207 HOH HOH . 
I 4 HOH B 126 426 134 HOH HOH . 
I 4 HOH B 127 427 163 HOH HOH . 
I 4 HOH B 128 428 111 HOH HOH . 
I 4 HOH B 129 429 165 HOH HOH . 
I 4 HOH B 130 430 95 HOH HOH . 
I 4 HOH B 131 431 153 HOH HOH . 
I 4 HOH B 132 432 228 HOH HOH . 
I 4 HOH B 133 433 69 HOH HOH . 
I 4 HOH B 134 434 114 HOH HOH . 
I 4 HOH B 135 435 136 HOH HOH . 
I 4 HOH B 136 436 96 HOH HOH . 
I 4 HOH B 137 437 101 HOH HOH . 
I 4 HOH B 138 438 144 HOH HOH . 
I 4 HOH B 139 439 74 HOH HOH . 
I 4 HOH B 140 440 67 HOH HOH . 
I 4 HOH B 141 441 175 HOH HOH . 
I 4 HOH B 142 442 128 HOH HOH . 
I 4 HOH B 143 443 257 HOH HOH . 
I 4 HOH B 144 444 81 HOH HOH . 
I 4 HOH B 145 445 183 HOH HOH . 
I 4 HOH B 146 446 132 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -19.194 
_atom_site.Cartn_y               7.642 
_atom_site.Cartn_z               3.371 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        24.38 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           226 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#