data_5PVV
#
_model_server_result.job_id            ImDR1Em_NPkKXcESXcqWuA 
_model_server_result.datetime_utc      '2024-11-04 18:47:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5pvv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    5PVV 
#
_exptl.entry_id    5PVV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5PVV 
_cell.length_a            54.919 
_cell.length_b            56.233 
_cell.length_c            101.664 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5PVV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LYS 108 A LYS 108 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc2 H O HOH . A HOH 343 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc3 H O HOH . A HOH 361 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc4 B O MET 107 B MET 107 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc5 B O ASN 110 B ASN 110 1_555 E NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5PVV 
_atom_sites.fract_transf_matrix[1][1]    0.018209 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017783 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009836 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 201 1 EDO EDO . 
D 2 EDO A 1 202 2 EDO EDO . 
E 3 NA B 1 201 1 NA NA . 
F 2 EDO B 1 202 3 EDO EDO . 
G 2 EDO B 1 203 4 EDO EDO . 
H 4 HOH A 1 301 224 HOH HOH . 
H 4 HOH A 2 302 201 HOH HOH . 
H 4 HOH A 3 303 38 HOH HOH . 
H 4 HOH A 4 304 240 HOH HOH . 
H 4 HOH A 5 305 215 HOH HOH . 
H 4 HOH A 6 306 233 HOH HOH . 
H 4 HOH A 7 307 219 HOH HOH . 
H 4 HOH A 8 308 244 HOH HOH . 
H 4 HOH A 9 309 245 HOH HOH . 
H 4 HOH A 10 310 115 HOH HOH . 
H 4 HOH A 11 311 100 HOH HOH . 
H 4 HOH A 12 312 243 HOH HOH . 
H 4 HOH A 13 313 29 HOH HOH . 
H 4 HOH A 14 314 56 HOH HOH . 
H 4 HOH A 15 315 172 HOH HOH . 
H 4 HOH A 16 316 203 HOH HOH . 
H 4 HOH A 17 317 161 HOH HOH . 
H 4 HOH A 18 318 93 HOH HOH . 
H 4 HOH A 19 319 55 HOH HOH . 
H 4 HOH A 20 320 250 HOH HOH . 
H 4 HOH A 21 321 77 HOH HOH . 
H 4 HOH A 22 322 40 HOH HOH . 
H 4 HOH A 23 323 104 HOH HOH . 
H 4 HOH A 24 324 13 HOH HOH . 
H 4 HOH A 25 325 231 HOH HOH . 
H 4 HOH A 26 326 180 HOH HOH . 
H 4 HOH A 27 327 59 HOH HOH . 
H 4 HOH A 28 328 57 HOH HOH . 
H 4 HOH A 29 329 86 HOH HOH . 
H 4 HOH A 30 330 138 HOH HOH . 
H 4 HOH A 31 331 105 HOH HOH . 
H 4 HOH A 32 332 116 HOH HOH . 
H 4 HOH A 33 333 25 HOH HOH . 
H 4 HOH A 34 334 54 HOH HOH . 
H 4 HOH A 35 335 191 HOH HOH . 
H 4 HOH A 36 336 41 HOH HOH . 
H 4 HOH A 37 337 166 HOH HOH . 
H 4 HOH A 38 338 45 HOH HOH . 
H 4 HOH A 39 339 14 HOH HOH . 
H 4 HOH A 40 340 108 HOH HOH . 
H 4 HOH A 41 341 216 HOH HOH . 
H 4 HOH A 42 342 48 HOH HOH . 
H 4 HOH A 43 343 218 HOH HOH . 
H 4 HOH A 44 344 121 HOH HOH . 
H 4 HOH A 45 345 145 HOH HOH . 
H 4 HOH A 46 346 23 HOH HOH . 
H 4 HOH A 47 347 44 HOH HOH . 
H 4 HOH A 48 348 110 HOH HOH . 
H 4 HOH A 49 349 106 HOH HOH . 
H 4 HOH A 50 350 190 HOH HOH . 
H 4 HOH A 51 351 139 HOH HOH . 
H 4 HOH A 52 352 75 HOH HOH . 
H 4 HOH A 53 353 226 HOH HOH . 
H 4 HOH A 54 354 3 HOH HOH . 
H 4 HOH A 55 355 112 HOH HOH . 
H 4 HOH A 56 356 223 HOH HOH . 
H 4 HOH A 57 357 102 HOH HOH . 
H 4 HOH A 58 358 118 HOH HOH . 
H 4 HOH A 59 359 19 HOH HOH . 
H 4 HOH A 60 360 80 HOH HOH . 
H 4 HOH A 61 361 22 HOH HOH . 
H 4 HOH A 62 362 8 HOH HOH . 
H 4 HOH A 63 363 15 HOH HOH . 
H 4 HOH A 64 364 24 HOH HOH . 
H 4 HOH A 65 365 227 HOH HOH . 
H 4 HOH A 66 366 148 HOH HOH . 
H 4 HOH A 67 367 192 HOH HOH . 
H 4 HOH A 68 368 197 HOH HOH . 
H 4 HOH A 69 369 142 HOH HOH . 
H 4 HOH A 70 370 187 HOH HOH . 
H 4 HOH A 71 371 35 HOH HOH . 
H 4 HOH A 72 372 151 HOH HOH . 
H 4 HOH A 73 373 255 HOH HOH . 
H 4 HOH A 74 374 258 HOH HOH . 
H 4 HOH A 75 375 103 HOH HOH . 
H 4 HOH A 76 376 122 HOH HOH . 
H 4 HOH A 77 377 117 HOH HOH . 
H 4 HOH A 78 378 193 HOH HOH . 
H 4 HOH A 79 379 147 HOH HOH . 
H 4 HOH A 80 380 178 HOH HOH . 
H 4 HOH A 81 381 5 HOH HOH . 
H 4 HOH A 82 382 30 HOH HOH . 
H 4 HOH A 83 383 76 HOH HOH . 
H 4 HOH A 84 384 182 HOH HOH . 
H 4 HOH A 85 385 157 HOH HOH . 
H 4 HOH A 86 386 171 HOH HOH . 
H 4 HOH A 87 387 168 HOH HOH . 
H 4 HOH A 88 388 198 HOH HOH . 
H 4 HOH A 89 389 164 HOH HOH . 
H 4 HOH A 90 390 154 HOH HOH . 
H 4 HOH A 91 391 221 HOH HOH . 
H 4 HOH A 92 392 49 HOH HOH . 
H 4 HOH A 93 393 60 HOH HOH . 
H 4 HOH A 94 394 222 HOH HOH . 
H 4 HOH A 95 395 200 HOH HOH . 
H 4 HOH A 96 396 125 HOH HOH . 
H 4 HOH A 97 397 66 HOH HOH . 
H 4 HOH A 98 398 220 HOH HOH . 
H 4 HOH A 99 399 119 HOH HOH . 
H 4 HOH A 100 400 155 HOH HOH . 
H 4 HOH A 101 401 113 HOH HOH . 
H 4 HOH A 102 402 170 HOH HOH . 
H 4 HOH A 103 403 46 HOH HOH . 
H 4 HOH A 104 404 53 HOH HOH . 
H 4 HOH A 105 405 217 HOH HOH . 
H 4 HOH A 106 406 63 HOH HOH . 
H 4 HOH A 107 407 184 HOH HOH . 
H 4 HOH A 108 408 177 HOH HOH . 
H 4 HOH A 109 409 185 HOH HOH . 
H 4 HOH A 110 410 90 HOH HOH . 
H 4 HOH A 111 411 85 HOH HOH . 
H 4 HOH A 112 412 194 HOH HOH . 
H 4 HOH A 113 413 149 HOH HOH . 
I 4 HOH B 1 301 241 HOH HOH . 
I 4 HOH B 2 302 254 HOH HOH . 
I 4 HOH B 3 303 130 HOH HOH . 
I 4 HOH B 4 304 209 HOH HOH . 
I 4 HOH B 5 305 94 HOH HOH . 
I 4 HOH B 6 306 214 HOH HOH . 
I 4 HOH B 7 307 206 HOH HOH . 
I 4 HOH B 8 308 72 HOH HOH . 
I 4 HOH B 9 309 162 HOH HOH . 
I 4 HOH B 10 310 212 HOH HOH . 
I 4 HOH B 11 311 146 HOH HOH . 
I 4 HOH B 12 312 123 HOH HOH . 
I 4 HOH B 13 313 251 HOH HOH . 
I 4 HOH B 14 314 97 HOH HOH . 
I 4 HOH B 15 315 150 HOH HOH . 
I 4 HOH B 16 316 210 HOH HOH . 
I 4 HOH B 17 317 160 HOH HOH . 
I 4 HOH B 18 318 7 HOH HOH . 
I 4 HOH B 19 319 252 HOH HOH . 
I 4 HOH B 20 320 247 HOH HOH . 
I 4 HOH B 21 321 26 HOH HOH . 
I 4 HOH B 22 322 208 HOH HOH . 
I 4 HOH B 23 323 109 HOH HOH . 
I 4 HOH B 24 324 159 HOH HOH . 
I 4 HOH B 25 325 61 HOH HOH . 
I 4 HOH B 26 326 4 HOH HOH . 
I 4 HOH B 27 327 10 HOH HOH . 
I 4 HOH B 28 328 256 HOH HOH . 
I 4 HOH B 29 329 6 HOH HOH . 
I 4 HOH B 30 330 126 HOH HOH . 
I 4 HOH B 31 331 204 HOH HOH . 
I 4 HOH B 32 332 28 HOH HOH . 
I 4 HOH B 33 333 124 HOH HOH . 
I 4 HOH B 34 334 140 HOH HOH . 
I 4 HOH B 35 335 68 HOH HOH . 
I 4 HOH B 36 336 34 HOH HOH . 
I 4 HOH B 37 337 78 HOH HOH . 
I 4 HOH B 38 338 51 HOH HOH . 
I 4 HOH B 39 339 91 HOH HOH . 
I 4 HOH B 40 340 99 HOH HOH . 
I 4 HOH B 41 341 249 HOH HOH . 
I 4 HOH B 42 342 1 HOH HOH . 
I 4 HOH B 43 343 88 HOH HOH . 
I 4 HOH B 44 344 98 HOH HOH . 
I 4 HOH B 45 345 158 HOH HOH . 
I 4 HOH B 46 346 188 HOH HOH . 
I 4 HOH B 47 347 133 HOH HOH . 
I 4 HOH B 48 348 39 HOH HOH . 
I 4 HOH B 49 349 87 HOH HOH . 
I 4 HOH B 50 350 36 HOH HOH . 
I 4 HOH B 51 351 9 HOH HOH . 
I 4 HOH B 52 352 62 HOH HOH . 
I 4 HOH B 53 353 2 HOH HOH . 
I 4 HOH B 54 354 16 HOH HOH . 
I 4 HOH B 55 355 179 HOH HOH . 
I 4 HOH B 56 356 47 HOH HOH . 
I 4 HOH B 57 357 32 HOH HOH . 
I 4 HOH B 58 358 143 HOH HOH . 
I 4 HOH B 59 359 211 HOH HOH . 
I 4 HOH B 60 360 89 HOH HOH . 
I 4 HOH B 61 361 71 HOH HOH . 
I 4 HOH B 62 362 181 HOH HOH . 
I 4 HOH B 63 363 186 HOH HOH . 
I 4 HOH B 64 364 129 HOH HOH . 
I 4 HOH B 65 365 259 HOH HOH . 
I 4 HOH B 66 366 173 HOH HOH . 
I 4 HOH B 67 367 11 HOH HOH . 
I 4 HOH B 68 368 230 HOH HOH . 
I 4 HOH B 69 369 232 HOH HOH . 
I 4 HOH B 70 370 79 HOH HOH . 
I 4 HOH B 71 371 253 HOH HOH . 
I 4 HOH B 72 372 52 HOH HOH . 
I 4 HOH B 73 373 189 HOH HOH . 
I 4 HOH B 74 374 17 HOH HOH . 
I 4 HOH B 75 375 196 HOH HOH . 
I 4 HOH B 76 376 235 HOH HOH . 
I 4 HOH B 77 377 127 HOH HOH . 
I 4 HOH B 78 378 246 HOH HOH . 
I 4 HOH B 79 379 31 HOH HOH . 
I 4 HOH B 80 380 176 HOH HOH . 
I 4 HOH B 81 381 12 HOH HOH . 
I 4 HOH B 82 382 237 HOH HOH . 
I 4 HOH B 83 383 42 HOH HOH . 
I 4 HOH B 84 384 156 HOH HOH . 
I 4 HOH B 85 385 43 HOH HOH . 
I 4 HOH B 86 386 141 HOH HOH . 
I 4 HOH B 87 387 20 HOH HOH . 
I 4 HOH B 88 388 131 HOH HOH . 
I 4 HOH B 89 389 37 HOH HOH . 
I 4 HOH B 90 390 58 HOH HOH . 
I 4 HOH B 91 391 248 HOH HOH . 
I 4 HOH B 92 392 83 HOH HOH . 
I 4 HOH B 93 393 64 HOH HOH . 
I 4 HOH B 94 394 21 HOH HOH . 
I 4 HOH B 95 395 82 HOH HOH . 
I 4 HOH B 96 396 234 HOH HOH . 
I 4 HOH B 97 397 205 HOH HOH . 
I 4 HOH B 98 398 70 HOH HOH . 
I 4 HOH B 99 399 242 HOH HOH . 
I 4 HOH B 100 400 33 HOH HOH . 
I 4 HOH B 101 401 135 HOH HOH . 
I 4 HOH B 102 402 195 HOH HOH . 
I 4 HOH B 103 403 202 HOH HOH . 
I 4 HOH B 104 404 84 HOH HOH . 
I 4 HOH B 105 405 73 HOH HOH . 
I 4 HOH B 106 406 239 HOH HOH . 
I 4 HOH B 107 407 174 HOH HOH . 
I 4 HOH B 108 408 213 HOH HOH . 
I 4 HOH B 109 409 225 HOH HOH . 
I 4 HOH B 110 410 92 HOH HOH . 
I 4 HOH B 111 411 18 HOH HOH . 
I 4 HOH B 112 412 236 HOH HOH . 
I 4 HOH B 113 413 65 HOH HOH . 
I 4 HOH B 114 414 120 HOH HOH . 
I 4 HOH B 115 415 27 HOH HOH . 
I 4 HOH B 116 416 169 HOH HOH . 
I 4 HOH B 117 417 137 HOH HOH . 
I 4 HOH B 118 418 152 HOH HOH . 
I 4 HOH B 119 419 50 HOH HOH . 
I 4 HOH B 120 420 199 HOH HOH . 
I 4 HOH B 121 421 107 HOH HOH . 
I 4 HOH B 122 422 229 HOH HOH . 
I 4 HOH B 123 423 163 HOH HOH . 
I 4 HOH B 124 424 114 HOH HOH . 
I 4 HOH B 125 425 167 HOH HOH . 
I 4 HOH B 126 426 95 HOH HOH . 
I 4 HOH B 127 427 207 HOH HOH . 
I 4 HOH B 128 428 238 HOH HOH . 
I 4 HOH B 129 429 228 HOH HOH . 
I 4 HOH B 130 430 165 HOH HOH . 
I 4 HOH B 131 431 134 HOH HOH . 
I 4 HOH B 132 432 96 HOH HOH . 
I 4 HOH B 133 433 153 HOH HOH . 
I 4 HOH B 134 434 111 HOH HOH . 
I 4 HOH B 135 435 67 HOH HOH . 
I 4 HOH B 136 436 69 HOH HOH . 
I 4 HOH B 137 437 136 HOH HOH . 
I 4 HOH B 138 438 144 HOH HOH . 
I 4 HOH B 139 439 101 HOH HOH . 
I 4 HOH B 140 440 74 HOH HOH . 
I 4 HOH B 141 441 128 HOH HOH . 
I 4 HOH B 142 442 257 HOH HOH . 
I 4 HOH B 143 443 183 HOH HOH . 
I 4 HOH B 144 444 81 HOH HOH . 
I 4 HOH B 145 445 175 HOH HOH . 
I 4 HOH B 146 446 132 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -19.103 
_atom_site.Cartn_y               7.545 
_atom_site.Cartn_z               3.354 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        18.5 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           1 
#