data_5PZO # _model_server_result.job_id xKvecI23mBHCIMAF_uV0Fg _model_server_result.datetime_utc '2025-08-15 17:22:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5pzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 5PZO # _exptl.entry_id 5PZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 557.595 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4-fluorophenyl)-N-methyl-5-[3-({2-methyl-1-oxo-1-[(1,3,4-thiadiazol-2-yl)amino]propan-2-yl}carbamoyl)phenyl]-1-benzofuran-3-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5PZO _cell.length_a 65.2 _cell.length_b 90.3 _cell.length_c 234.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5PZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,X 1 1 B,N,O,P,Q,R,S,T,U,V,W,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 O N N # _chem_comp.formula 'C29 H24 F N5 O4 S' _chem_comp.formula_weight 557.595 _chem_comp.id 8XM _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4-fluorophenyl)-N-methyl-5-[3-({2-methyl-1-oxo-1-[(1,3,4-thiadiazol-2-yl)amino]propan-2-yl}carbamoyl)phenyl]-1-benzofuran-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 C30 8XM sing 92 n n C3 C2 8XM doub 93 n y C3 C4 8XM sing 94 n y C2 C1 8XM sing 95 n y C31 C30 8XM sing 96 n n C30 N28 8XM sing 97 n n C30 C32 8XM sing 98 n n O7 C4 8XM sing 99 n y O7 C8 8XM sing 100 n y C16 C15 8XM doub 101 n y C16 C17 8XM sing 102 n y C15 C14 8XM sing 103 n y C4 C5 8XM doub 104 n y O35 C32 8XM doub 105 n n N28 C27 8XM sing 106 n n O29 C27 8XM doub 107 n n C27 C23 8XM sing 108 n n C32 N34 8XM sing 109 n n C1 C13 8XM sing 110 n n C1 C6 8XM doub 111 n y C22 C13 8XM doub 112 n y C22 C23 8XM sing 113 n y F20 C17 8XM sing 114 n n C8 C14 8XM sing 115 n n C8 C9 8XM doub 116 n y C17 C18 8XM doub 117 n y C14 C19 8XM doub 118 n y C13 C26 8XM sing 119 n y C23 C24 8XM doub 120 n y C5 C6 8XM sing 121 n y C5 C9 8XM sing 122 n y C26 C25 8XM doub 123 n y N34 C36 8XM sing 124 n n C24 C25 8XM sing 125 n y C9 C10 8XM sing 126 n n C19 C18 8XM sing 127 n y S37 C36 8XM sing 128 n y S37 C38 8XM sing 129 n y C36 N40 8XM doub 130 n y C10 N11 8XM sing 131 n n C10 O12 8XM doub 132 n n N11 C21 8XM sing 133 n n N40 N39 8XM sing 134 n y C38 N39 8XM doub 135 n y C18 H47 8XM sing 136 n n C16 H46 8XM sing 137 n n C15 H45 8XM sing 138 n n C19 H48 8XM sing 139 n n C21 H50 8XM sing 140 n n C21 H49 8XM sing 141 n n C21 H51 8XM sing 142 n n C22 H52 8XM sing 143 n n C24 H53 8XM sing 144 n n C33 H62 8XM sing 145 n n C33 H60 8XM sing 146 n n C33 H61 8XM sing 147 n n C2 H41 8XM sing 148 n n C3 H42 8XM sing 149 n n C6 H43 8XM sing 150 n n N11 H44 8XM sing 151 n n C25 H54 8XM sing 152 n n C26 H55 8XM sing 153 n n N28 H56 8XM sing 154 n n C31 H58 8XM sing 155 n n C31 H57 8XM sing 156 n n C31 H59 8XM sing 157 n n N34 H63 8XM sing 158 n n C38 H64 8XM sing 159 n n # _atom_sites.entry_id 5PZO _atom_sites.fract_transf_matrix[1][1] 0.015337 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 23E A 1 601 601 23E 23E . D 3 8XM A 1 602 602 8XM LG1 . E 4 SO4 A 1 603 1 SO4 SO4 . F 4 SO4 A 1 604 3 SO4 SO4 . G 4 SO4 A 1 605 4 SO4 SO4 . H 4 SO4 A 1 606 6 SO4 SO4 . I 5 GOL A 1 607 21 GOL GOL . J 5 GOL A 1 608 22 GOL GOL . K 5 GOL A 1 609 23 GOL GOL . L 5 GOL A 1 610 27 GOL GOL . M 5 GOL A 1 611 31 GOL GOL . N 2 23E B 1 601 601 23E 23E . O 3 8XM B 1 602 602 8XM LG1 . P 4 SO4 B 1 603 5 SO4 SO4 . Q 4 SO4 B 1 604 7 SO4 SO4 . R 4 SO4 B 1 605 9 SO4 SO4 . S 4 SO4 B 1 606 12 SO4 SO4 . T 5 GOL B 1 607 24 GOL GOL . U 5 GOL B 1 608 25 GOL GOL . V 5 GOL B 1 609 30 GOL GOL . W 5 GOL B 1 610 33 GOL GOL . X 6 HOH A 1 701 21 HOH HOH . X 6 HOH A 2 702 24 HOH HOH . X 6 HOH A 3 703 25 HOH HOH . X 6 HOH A 4 704 23 HOH HOH . X 6 HOH A 5 705 47 HOH HOH . X 6 HOH A 6 706 35 HOH HOH . X 6 HOH A 7 707 32 HOH HOH . X 6 HOH A 8 708 30 HOH HOH . X 6 HOH A 9 709 15 HOH HOH . X 6 HOH A 10 710 10 HOH HOH . X 6 HOH A 11 711 51 HOH HOH . X 6 HOH A 12 712 31 HOH HOH . X 6 HOH A 13 713 20 HOH HOH . X 6 HOH A 14 714 42 HOH HOH . X 6 HOH A 15 715 29 HOH HOH . X 6 HOH A 16 716 48 HOH HOH . X 6 HOH A 17 717 3 HOH HOH . X 6 HOH A 18 718 8 HOH HOH . X 6 HOH A 19 719 53 HOH HOH . X 6 HOH A 20 720 4 HOH HOH . X 6 HOH A 21 721 17 HOH HOH . X 6 HOH A 22 722 12 HOH HOH . X 6 HOH A 23 723 37 HOH HOH . X 6 HOH A 24 724 11 HOH HOH . X 6 HOH A 25 725 43 HOH HOH . X 6 HOH A 26 726 54 HOH HOH . X 6 HOH A 27 727 41 HOH HOH . X 6 HOH A 28 728 19 HOH HOH . X 6 HOH A 29 729 50 HOH HOH . X 6 HOH A 30 730 28 HOH HOH . X 6 HOH A 31 731 6 HOH HOH . X 6 HOH A 32 732 44 HOH HOH . X 6 HOH A 33 733 13 HOH HOH . X 6 HOH A 34 734 18 HOH HOH . X 6 HOH A 35 735 16 HOH HOH . X 6 HOH A 36 736 49 HOH HOH . X 6 HOH A 37 737 26 HOH HOH . X 6 HOH A 38 738 56 HOH HOH . X 6 HOH A 39 739 45 HOH HOH . Y 6 HOH B 1 701 22 HOH HOH . Y 6 HOH B 2 702 40 HOH HOH . Y 6 HOH B 3 703 34 HOH HOH . Y 6 HOH B 4 704 1 HOH HOH . Y 6 HOH B 5 705 36 HOH HOH . Y 6 HOH B 6 706 2 HOH HOH . Y 6 HOH B 7 707 55 HOH HOH . Y 6 HOH B 8 708 39 HOH HOH . Y 6 HOH B 9 709 46 HOH HOH . Y 6 HOH B 10 710 5 HOH HOH . Y 6 HOH B 11 711 14 HOH HOH . Y 6 HOH B 12 712 38 HOH HOH . Y 6 HOH B 13 713 27 HOH HOH . Y 6 HOH B 14 714 33 HOH HOH . Y 6 HOH B 15 715 7 HOH HOH . Y 6 HOH B 16 716 52 HOH HOH . Y 6 HOH B 17 717 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 8XM . . . D 3 22.873 7.573 15.127 1 66.9 ? C13 8XM 602 A 1 HETATM 2 C C18 8XM . . . D 3 31.248 12.071 16.268 1 64.44 ? C18 8XM 602 A 1 HETATM 3 C C17 8XM . . . D 3 31.92 12.235 15.087 1 62.15 ? C17 8XM 602 A 1 HETATM 4 C C16 8XM . . . D 3 31.535 11.637 13.92 1 58.8 ? C16 8XM 602 A 1 HETATM 5 C C15 8XM . . . D 3 30.403 10.842 13.935 1 58.36 ? C15 8XM 602 A 1 HETATM 6 C C19 8XM . . . D 3 30.098 11.299 16.265 1 64.52 ? C19 8XM 602 A 1 HETATM 7 C C21 8XM . . . D 3 29.415 8.458 19.13 1 65.83 ? C21 8XM 602 A 1 HETATM 8 C C22 8XM . . . D 3 21.783 8.377 14.787 1 69.72 ? C22 8XM 602 A 1 HETATM 9 C C23 8XM . . . D 3 20.487 8.021 15.153 1 68.62 ? C23 8XM 602 A 1 HETATM 10 C C24 8XM . . . D 3 20.285 6.878 15.919 1 62.52 ? C24 8XM 602 A 1 HETATM 11 C C27 8XM . . . D 3 19.383 8.83 14.542 1 72.72 ? C27 8XM 602 A 1 HETATM 12 C C33 8XM . . . D 3 17.366 9.35 12.22 1 59.02 ? C33 8XM 602 A 1 HETATM 13 C C1 8XM . . . D 3 24.242 7.987 14.721 1 62.75 ? C1 8XM 602 A 1 HETATM 14 C C2 8XM . . . D 3 24.523 8.286 13.38 1 63.46 ? C2 8XM 602 A 1 HETATM 15 C C3 8XM . . . D 3 25.719 8.861 12.99 1 63 ? C3 8XM 602 A 1 HETATM 16 C C4 8XM . . . D 3 26.64 9.139 13.976 1 65.26 ? C4 8XM 602 A 1 HETATM 17 C C5 8XM . . . D 3 26.429 8.83 15.312 1 64.54 ? C5 8XM 602 A 1 HETATM 18 C C6 8XM . . . D 3 25.224 8.234 15.687 1 58.71 ? C6 8XM 602 A 1 HETATM 19 O O7 8XM . . . D 3 27.836 9.812 13.815 1 65.89 ? O7 8XM 602 A 1 HETATM 20 C C8 8XM . . . D 3 28.4 9.924 15.074 1 63.51 ? C8 8XM 602 A 1 HETATM 21 C C9 8XM . . . D 3 27.606 9.342 16.019 1 64.95 ? C9 8XM 602 A 1 HETATM 22 C C10 8XM . . . D 3 27.83 9.225 17.446 1 63.05 ? C10 8XM 602 A 1 HETATM 23 N N11 8XM . . . D 3 28.868 8.466 17.785 1 65.68 ? N11 8XM 602 A 1 HETATM 24 O O12 8XM . . . D 3 27.094 9.793 18.252 1 59.42 ? O12 8XM 602 A 1 HETATM 25 C C14 8XM . . . D 3 29.659 10.674 15.1 1 61.31 ? C14 8XM 602 A 1 HETATM 26 F F20 8XM . . . D 3 33.001 13.053 15.068 1 63.73 ? F20 8XM 602 A 1 HETATM 27 C C25 8XM . . . D 3 21.353 6.057 16.234 1 62.75 ? C25 8XM 602 A 1 HETATM 28 C C26 8XM . . . D 3 22.636 6.392 15.83 1 64.9 ? C26 8XM 602 A 1 HETATM 29 N N28 8XM . . . D 3 18.283 8.149 14.145 1 70.53 ? N28 8XM 602 A 1 HETATM 30 O O29 8XM . . . D 3 19.503 10.046 14.4 1 77.42 ? O29 8XM 602 A 1 HETATM 31 C C30 8XM . . . D 3 17.071 8.802 13.623 1 65.22 ? C30 8XM 602 A 1 HETATM 32 C C31 8XM . . . D 3 15.957 7.752 13.569 1 62.87 ? C31 8XM 602 A 1 HETATM 33 C C32 8XM . . . D 3 16.567 9.926 14.56 1 63.05 ? C32 8XM 602 A 1 HETATM 34 N N34 8XM . . . D 3 16.602 9.63 15.908 1 60.72 ? N34 8XM 602 A 1 HETATM 35 O O35 8XM . . . D 3 16.117 10.973 14.11 1 61.72 ? O35 8XM 602 A 1 HETATM 36 C C36 8XM . . . D 3 16.008 10.375 16.904 1 61.55 ? C36 8XM 602 A 1 HETATM 37 S S37 8XM . . . D 3 15.191 11.881 16.652 1 63.65 ? S37 8XM 602 A 1 HETATM 38 C C38 8XM . . . D 3 14.978 11.915 18.362 1 64.18 ? C38 8XM 602 A 1 HETATM 39 N N39 8XM . . . D 3 15.448 10.9 18.997 1 61.77 ? N39 8XM 602 A 1 HETATM 40 N N40 8XM . . . D 3 16.055 9.985 18.148 1 61.95 ? N40 8XM 602 A 1 HETATM 41 H H47 8XM . . . D 3 31.642 12.481 17.194 0 64.36 ? H47 8XM 602 A 1 HETATM 42 H H46 8XM . . . D 3 32.092 11.8 13 0 58.76 ? H46 8XM 602 A 1 HETATM 43 H H45 8XM . . . D 3 30.08 10.375 13.008 0 58.37 ? H45 8XM 602 A 1 HETATM 44 H H48 8XM . . . D 3 29.537 11.217 17.195 0 64.49 ? H48 8XM 602 A 1 HETATM 45 H H50 8XM . . . D 3 30.418 8.037 19.186 0 65.83 ? H50 8XM 602 A 1 HETATM 46 H H49 8XM . . . D 3 28.787 7.891 19.816 0 65.83 ? H49 8XM 602 A 1 HETATM 47 H H51 8XM . . . D 3 29.481 9.473 19.519 0 65.83 ? H51 8XM 602 A 1 HETATM 48 H H52 8XM . . . D 3 21.979 9.288 14.225 0 69.67 ? H52 8XM 602 A 1 HETATM 49 H H53 8XM . . . D 3 19.287 6.623 16.27 0 62.38 ? H53 8XM 602 A 1 HETATM 50 H H62 8XM . . . D 3 17.882 8.634 11.582 0 59.12 ? H62 8XM 602 A 1 HETATM 51 H H60 8XM . . . D 3 17.962 10.259 12.26 0 59.12 ? H60 8XM 602 A 1 HETATM 52 H H61 8XM . . . D 3 16.458 9.619 11.682 0 59.12 ? H61 8XM 602 A 1 HETATM 53 H H41 8XM . . . D 3 23.783 8.078 12.609 0 63.54 ? H41 8XM 602 A 1 HETATM 54 H H42 8XM . . . D 3 25.919 9.107 11.949 0 63.04 ? H42 8XM 602 A 1 HETATM 55 H H43 8XM . . . D 3 25.057 7.968 16.73 0 58.68 ? H43 8XM 602 A 1 HETATM 56 H H44 8XM . . . D 3 29.288 7.827 17.118 0 65.7 ? H44 8XM 602 A 1 HETATM 57 H H54 8XM . . . D 3 21.186 5.14 16.797 0 62.76 ? H54 8XM 602 A 1 HETATM 58 H H55 8XM . . . D 3 23.459 5.713 16.051 0 64.96 ? H55 8XM 602 A 1 HETATM 59 H H56 8XM . . . D 3 18.263 7.135 14.173 0 70.49 ? H56 8XM 602 A 1 HETATM 60 H H58 8XM . . . D 3 16.249 6.845 13.042 0 62.91 ? H58 8XM 602 A 1 HETATM 61 H H57 8XM . . . D 3 15.059 8.127 13.079 0 62.91 ? H57 8XM 602 A 1 HETATM 62 H H59 8XM . . . D 3 15.639 7.442 14.563 0 62.91 ? H59 8XM 602 A 1 HETATM 63 H H63 8XM . . . D 3 17.069 8.796 16.248 0 60.84 ? H63 8XM 602 A 1 HETATM 64 H H64 8XM . . . D 3 14.504 12.765 18.848 0 64.12 ? H64 8XM 602 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 64 #