data_5PZP
#
_model_server_result.job_id            OuiR3xmytZ64Ub8t34tkmQ 
_model_server_result.datetime_utc      '2025-08-15 17:24:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5pzp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    5PZP 
#
_exptl.entry_id    5PZP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              538.544 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-fluoro-2-(4-fluorophenyl)-N-methyl-5-(2-methyl-5-{[1-(pyrimidin-2-yl)cyclopropyl]carbamoyl}phenyl)-1-benzofuran-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5PZP 
_cell.length_a            65.2 
_cell.length_b            90.7 
_cell.length_c            234.9 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5PZP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,S 1 1 
B,L,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 M N N 
#
_chem_comp.formula           'C31 H24 F2 N4 O3' 
_chem_comp.formula_weight    538.544 
_chem_comp.id                8XJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-fluoro-2-(4-fluorophenyl)-N-methyl-5-(2-methyl-5-{[1-(pyrimidin-2-yl)cyclopropyl]carbamoyl}phenyl)-1-benzofuran-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C9 8XJ sing 92 n n 
C8 C11 8XJ sing 93 n n 
C32 C33 8XJ doub 94 n y 
C32 C36 8XJ sing 95 n y 
C9 C11 8XJ sing 96 n n 
C33 C34 8XJ sing 97 n y 
O40 C36 8XJ sing 98 n y 
O40 C39 8XJ sing 99 n y 
C36 C37 8XJ doub 100 n y 
C11 N13 8XJ sing 101 n n 
C11 C10 8XJ sing 102 n n 
C24 C23 8XJ doub 103 n y 
C24 C25 8XJ sing 104 n y 
C23 C28 8XJ sing 105 n y 
N13 C14 8XJ sing 106 n n 
O12 C14 8XJ doub 107 n n 
C14 C16 8XJ sing 108 n n 
C34 C21 8XJ sing 109 n n 
C34 C35 8XJ doub 110 n y 
C15 C21 8XJ doub 111 n y 
C15 C16 8XJ sing 112 n y 
N3 C10 8XJ doub 113 n y 
N3 C4 8XJ sing 114 n y 
C21 C19 8XJ sing 115 n y 
C16 C17 8XJ doub 116 n y 
C39 C28 8XJ sing 117 n n 
C39 C38 8XJ doub 118 n y 
F22 C25 8XJ sing 119 n n 
C28 C27 8XJ doub 120 n y 
C25 C26 8XJ doub 121 n y 
C10 N7 8XJ sing 122 n y 
C37 C35 8XJ sing 123 n y 
C37 C38 8XJ sing 124 n y 
C35 F1 8XJ sing 125 n n 
C19 C2 8XJ sing 126 n n 
C19 C18 8XJ doub 127 n y 
C17 C18 8XJ sing 128 n y 
C4 C5 8XJ doub 129 n y 
C38 C31 8XJ sing 130 n n 
C27 C26 8XJ sing 131 n y 
N7 C6 8XJ doub 132 n y 
C5 C6 8XJ sing 133 n y 
C31 N29 8XJ sing 134 n n 
C31 O30 8XJ doub 135 n n 
N29 C20 8XJ sing 136 n n 
C18 H57 8XJ sing 137 n n 
C17 H44 8XJ sing 138 n n 
C15 H43 8XJ sing 139 n n 
C20 H59 8XJ sing 140 n n 
C20 H45 8XJ sing 141 n n 
C20 H58 8XJ sing 142 n n 
C23 H42 8XJ sing 143 n n 
C24 H60 8XJ sing 144 n n 
C27 H41 8XJ sing 145 n n 
C33 H64 8XJ sing 146 n n 
C2 H46 8XJ sing 147 n n 
C2 H48 8XJ sing 148 n n 
C2 H47 8XJ sing 149 n n 
C4 H49 8XJ sing 150 n n 
C5 H50 8XJ sing 151 n n 
C6 H51 8XJ sing 152 n n 
C8 H52 8XJ sing 153 n n 
C8 H53 8XJ sing 154 n n 
C9 H55 8XJ sing 155 n n 
C9 H54 8XJ sing 156 n n 
N13 H56 8XJ sing 157 n n 
C26 H61 8XJ sing 158 n n 
N29 H62 8XJ sing 159 n n 
C32 H63 8XJ sing 160 n n 
#
_atom_sites.entry_id                     5PZP 
_atom_sites.fract_transf_matrix[1][1]    0.015337 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011025 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004257 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 23E A 1 601 601 23E 23E . 
D 3 8XJ A 1 602 602 8XJ LG1 . 
E 4 SO4 A 1 603 4 SO4 SO4 . 
F 4 SO4 A 1 604 6 SO4 SO4 . 
G 4 SO4 A 1 605 8 SO4 SO4 . 
H 4 SO4 A 1 606 12 SO4 SO4 . 
I 5 GOL A 1 607 21 GOL GOL . 
J 5 GOL A 1 608 22 GOL GOL . 
K 5 GOL A 1 609 23 GOL GOL . 
L 2 23E B 1 601 601 23E 23E . 
M 3 8XJ B 1 602 602 8XJ LG1 . 
N 4 SO4 B 1 603 5 SO4 SO4 . 
O 4 SO4 B 1 604 7 SO4 SO4 . 
P 4 SO4 B 1 605 9 SO4 SO4 . 
Q 4 SO4 B 1 606 11 SO4 SO4 . 
R 5 GOL B 1 607 24 GOL GOL . 
S 6 HOH A 1 701 1 HOH HOH . 
S 6 HOH A 2 702 4 HOH HOH . 
S 6 HOH A 3 703 6 HOH HOH . 
S 6 HOH A 4 704 2 HOH HOH . 
S 6 HOH A 5 705 7 HOH HOH . 
S 6 HOH A 6 706 5 HOH HOH . 
S 6 HOH A 7 707 10 HOH HOH . 
S 6 HOH A 8 708 8 HOH HOH . 
S 6 HOH A 9 709 3 HOH HOH . 
T 6 HOH B 1 701 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 8XJ . . . D 3 21.458 6.229 15.94 1 47.71 ? C18 8XJ 602 A 1 
HETATM 2 C C17 8XJ . . . D 3 20.389 7.06 15.668 1 45.72 ? C17 8XJ 602 A 1 
HETATM 3 C C16 8XJ . . . D 3 20.588 8.259 14.994 1 45.22 ? C16 8XJ 602 A 1 
HETATM 4 C C15 8XJ . . . D 3 21.887 8.647 14.675 1 41.55 ? C15 8XJ 602 A 1 
HETATM 5 C C19 8XJ . . . D 3 22.761 6.561 15.573 1 47.92 ? C19 8XJ 602 A 1 
HETATM 6 C C20 8XJ . . . D 3 29.375 8.683 19.157 1 46.04 ? C20 8XJ 602 A 1 
HETATM 7 C C21 8XJ . . . D 3 22.979 7.814 14.945 1 44.49 ? C21 8XJ 602 A 1 
HETATM 8 C C23 8XJ . . . D 3 30.578 11.026 14.019 1 39.11 ? C23 8XJ 602 A 1 
HETATM 9 C C24 8XJ . . . D 3 31.687 11.854 14.013 1 41.4 ? C24 8XJ 602 A 1 
HETATM 10 C C11 8XJ . . . D 3 17.027 9.186 13.981 1 49.98 ? C11 8XJ 602 A 1 
HETATM 11 C C34 8XJ . . . D 3 24.344 8.285 14.553 1 39.61 ? C34 8XJ 602 A 1 
HETATM 12 C C27 8XJ . . . D 3 30.099 11.672 16.279 1 38.14 ? C27 8XJ 602 A 1 
HETATM 13 C C33 8XJ . . . D 3 24.636 8.616 13.227 1 37.5 ? C33 8XJ 602 A 1 
HETATM 14 F F1 8XJ . . . D 3 25 8.25 16.781 1 33.5 ? F1 8XJ 602 A 1 
HETATM 15 C C2 8XJ . . . D 3 23.867 5.557 15.78 1 46.11 ? C2 8XJ 602 A 1 
HETATM 16 N N3 8XJ . . . D 3 15.54 10.91 14.909 1 58.67 ? N3 8XJ 602 A 1 
HETATM 17 C C4 8XJ . . . D 3 15.113 11.614 15.972 1 57.35 ? C4 8XJ 602 A 1 
HETATM 18 C C5 8XJ . . . D 3 15.618 11.452 17.241 1 56.6 ? C5 8XJ 602 A 1 
HETATM 19 C C6 8XJ . . . D 3 16.612 10.505 17.376 1 57.88 ? C6 8XJ 602 A 1 
HETATM 20 N N7 8XJ . . . D 3 17.081 9.772 16.354 1 56.9 ? N7 8XJ 602 A 1 
HETATM 21 C C8 8XJ . . . D 3 16.77 9.64 12.561 1 46.38 ? C8 8XJ 602 A 1 
HETATM 22 C C9 8XJ . . . D 3 15.956 8.536 13.133 1 46.2 ? C9 8XJ 602 A 1 
HETATM 23 C C10 8XJ . . . D 3 16.507 10.021 15.169 1 56.18 ? C10 8XJ 602 A 1 
HETATM 24 O O12 8XJ . . . D 3 19.583 10.302 14.318 1 57.09 ? O12 8XJ 602 A 1 
HETATM 25 N N13 8XJ . . . D 3 18.273 8.457 14.261 1 49.79 ? N13 8XJ 602 A 1 
HETATM 26 C C14 8XJ . . . D 3 19.446 9.09 14.494 1 51.31 ? C14 8XJ 602 A 1 
HETATM 27 F F22 8XJ . . . D 3 33.031 13.402 15.136 1 47.59 ? F22 8XJ 602 A 1 
HETATM 28 C C25 8XJ . . . D 3 31.978 12.554 15.154 1 42.25 ? C25 8XJ 602 A 1 
HETATM 29 C C26 8XJ . . . D 3 31.234 12.465 16.298 1 37.82 ? C26 8XJ 602 A 1 
HETATM 30 C C28 8XJ . . . D 3 29.751 10.949 15.137 1 38.34 ? C28 8XJ 602 A 1 
HETATM 31 N N29 8XJ . . . D 3 28.833 8.693 17.81 1 49.43 ? N29 8XJ 602 A 1 
HETATM 32 O O30 8XJ . . . D 3 27.2 10.205 18.234 1 51.34 ? O30 8XJ 602 A 1 
HETATM 33 C C31 8XJ . . . D 3 27.868 9.533 17.441 1 50.05 ? C31 8XJ 602 A 1 
HETATM 34 C C32 8XJ . . . D 3 25.827 9.237 12.896 1 37.68 ? C32 8XJ 602 A 1 
HETATM 35 C C35 8XJ . . . D 3 25.301 8.553 15.51 1 36.9 ? C35 8XJ 602 A 1 
HETATM 36 C C36 8XJ . . . D 3 26.741 9.489 13.906 1 42.7 ? C36 8XJ 602 A 1 
HETATM 37 C C37 8XJ . . . D 3 26.518 9.144 15.232 1 42.96 ? C37 8XJ 602 A 1 
HETATM 38 C C38 8XJ . . . D 3 27.662 9.637 15.983 1 45.39 ? C38 8XJ 602 A 1 
HETATM 39 C C39 8XJ . . . D 3 28.483 10.227 15.064 1 41.95 ? C39 8XJ 602 A 1 
HETATM 40 O O40 8XJ . . . D 3 27.947 10.147 13.785 1 43.8 ? O40 8XJ 602 A 1 
HETATM 41 H H57 8XJ . . . D 3 21.275 5.288 16.458 0 47.73 ? H57 8XJ 602 A 1 
HETATM 42 H H44 8XJ . . . D 3 19.4 6.772 16.018 0 45.8 ? H44 8XJ 602 A 1 
HETATM 43 H H43 8XJ . . . D 3 22.07 9.611 14.203 0 41.58 ? H43 8XJ 602 A 1 
HETATM 44 H H59 8XJ . . . D 3 30.109 7.888 19.278 0 46.01 ? H59 8XJ 602 A 1 
HETATM 45 H H45 8XJ . . . D 3 28.601 8.536 19.909 0 46.01 ? H45 8XJ 602 A 1 
HETATM 46 H H58 8XJ . . . D 3 29.868 9.625 19.396 0 46.01 ? H58 8XJ 602 A 1 
HETATM 47 H H42 8XJ . . . D 3 30.341 10.46 13.12 0 39.04 ? H42 8XJ 602 A 1 
HETATM 48 H H60 8XJ . . . D 3 32.272 11.966 13.104 0 41.35 ? H60 8XJ 602 A 1 
HETATM 49 H H41 8XJ . . . D 3 29.468 11.641 17.165 0 38.11 ? H41 8XJ 602 A 1 
HETATM 50 H H64 8XJ . . . D 3 23.905 8.421 12.445 0 37.48 ? H64 8XJ 602 A 1 
HETATM 51 H H46 8XJ . . . D 3 24.555 5.551 14.936 0 46.18 ? H46 8XJ 602 A 1 
HETATM 52 H H48 8XJ . . . D 3 23.476 4.544 15.872 0 46.18 ? H48 8XJ 602 A 1 
HETATM 53 H H47 8XJ . . . D 3 24.445 5.747 16.683 0 46.18 ? H47 8XJ 602 A 1 
HETATM 54 H H49 8XJ . . . D 3 14.297 12.307 15.78 0 57.38 ? H49 8XJ 602 A 1 
HETATM 55 H H50 8XJ . . . D 3 15.249 12.022 18.088 0 56.72 ? H50 8XJ 602 A 1 
HETATM 56 H H51 8XJ . . . D 3 17.073 10.304 18.342 0 57.99 ? H51 8XJ 602 A 1 
HETATM 57 H H52 8XJ . . . D 3 16.356 10.63 12.387 0 46.35 ? H52 8XJ 602 A 1 
HETATM 58 H H53 8XJ . . . D 3 17.496 9.441 11.774 0 46.35 ? H53 8XJ 602 A 1 
HETATM 59 H H55 8XJ . . . D 3 16.096 7.501 12.827 0 46.2 ? H55 8XJ 602 A 1 
HETATM 60 H H54 8XJ . . . D 3 14.908 8.672 13.389 0 46.2 ? H54 8XJ 602 A 1 
HETATM 61 H H56 8XJ . . . D 3 18.179 7.447 14.223 0 49.87 ? H56 8XJ 602 A 1 
HETATM 62 H H61 8XJ . . . D 3 31.551 12.966 17.21 0 37.66 ? H61 8XJ 602 A 1 
HETATM 63 H H62 8XJ . . . D 3 29.213 8.013 17.159 0 49.24 ? H62 8XJ 602 A 1 
HETATM 64 H H63 8XJ . . . D 3 26.018 9.567 11.877 0 37.66 ? H63 8XJ 602 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           608 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           64 
#