data_5PZP
#
_model_server_result.job_id            Vuyz7oM4PBKq4sCQDeQl2A 
_model_server_result.datetime_utc      '2025-08-15 17:24:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5pzp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":602}' 
#
_entry.id    5PZP 
#
_exptl.entry_id    5PZP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              538.544 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-fluoro-2-(4-fluorophenyl)-N-methyl-5-(2-methyl-5-{[1-(pyrimidin-2-yl)cyclopropyl]carbamoyl}phenyl)-1-benzofuran-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5PZP 
_cell.length_a            65.2 
_cell.length_b            90.7 
_cell.length_c            234.9 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5PZP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,S 1 1 
B,L,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 M N N 
#
_chem_comp.formula           'C31 H24 F2 N4 O3' 
_chem_comp.formula_weight    538.544 
_chem_comp.id                8XJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-fluoro-2-(4-fluorophenyl)-N-methyl-5-(2-methyl-5-{[1-(pyrimidin-2-yl)cyclopropyl]carbamoyl}phenyl)-1-benzofuran-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C9 8XJ sing 92 n n 
C8 C11 8XJ sing 93 n n 
C32 C33 8XJ doub 94 n y 
C32 C36 8XJ sing 95 n y 
C9 C11 8XJ sing 96 n n 
C33 C34 8XJ sing 97 n y 
O40 C36 8XJ sing 98 n y 
O40 C39 8XJ sing 99 n y 
C36 C37 8XJ doub 100 n y 
C11 N13 8XJ sing 101 n n 
C11 C10 8XJ sing 102 n n 
C24 C23 8XJ doub 103 n y 
C24 C25 8XJ sing 104 n y 
C23 C28 8XJ sing 105 n y 
N13 C14 8XJ sing 106 n n 
O12 C14 8XJ doub 107 n n 
C14 C16 8XJ sing 108 n n 
C34 C21 8XJ sing 109 n n 
C34 C35 8XJ doub 110 n y 
C15 C21 8XJ doub 111 n y 
C15 C16 8XJ sing 112 n y 
N3 C10 8XJ doub 113 n y 
N3 C4 8XJ sing 114 n y 
C21 C19 8XJ sing 115 n y 
C16 C17 8XJ doub 116 n y 
C39 C28 8XJ sing 117 n n 
C39 C38 8XJ doub 118 n y 
F22 C25 8XJ sing 119 n n 
C28 C27 8XJ doub 120 n y 
C25 C26 8XJ doub 121 n y 
C10 N7 8XJ sing 122 n y 
C37 C35 8XJ sing 123 n y 
C37 C38 8XJ sing 124 n y 
C35 F1 8XJ sing 125 n n 
C19 C2 8XJ sing 126 n n 
C19 C18 8XJ doub 127 n y 
C17 C18 8XJ sing 128 n y 
C4 C5 8XJ doub 129 n y 
C38 C31 8XJ sing 130 n n 
C27 C26 8XJ sing 131 n y 
N7 C6 8XJ doub 132 n y 
C5 C6 8XJ sing 133 n y 
C31 N29 8XJ sing 134 n n 
C31 O30 8XJ doub 135 n n 
N29 C20 8XJ sing 136 n n 
C18 H57 8XJ sing 137 n n 
C17 H44 8XJ sing 138 n n 
C15 H43 8XJ sing 139 n n 
C20 H59 8XJ sing 140 n n 
C20 H45 8XJ sing 141 n n 
C20 H58 8XJ sing 142 n n 
C23 H42 8XJ sing 143 n n 
C24 H60 8XJ sing 144 n n 
C27 H41 8XJ sing 145 n n 
C33 H64 8XJ sing 146 n n 
C2 H46 8XJ sing 147 n n 
C2 H48 8XJ sing 148 n n 
C2 H47 8XJ sing 149 n n 
C4 H49 8XJ sing 150 n n 
C5 H50 8XJ sing 151 n n 
C6 H51 8XJ sing 152 n n 
C8 H52 8XJ sing 153 n n 
C8 H53 8XJ sing 154 n n 
C9 H55 8XJ sing 155 n n 
C9 H54 8XJ sing 156 n n 
N13 H56 8XJ sing 157 n n 
C26 H61 8XJ sing 158 n n 
N29 H62 8XJ sing 159 n n 
C32 H63 8XJ sing 160 n n 
#
_atom_sites.entry_id                     5PZP 
_atom_sites.fract_transf_matrix[1][1]    0.015337 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011025 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004257 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 23E A 1 601 601 23E 23E . 
D 3 8XJ A 1 602 602 8XJ LG1 . 
E 4 SO4 A 1 603 4 SO4 SO4 . 
F 4 SO4 A 1 604 6 SO4 SO4 . 
G 4 SO4 A 1 605 8 SO4 SO4 . 
H 4 SO4 A 1 606 12 SO4 SO4 . 
I 5 GOL A 1 607 21 GOL GOL . 
J 5 GOL A 1 608 22 GOL GOL . 
K 5 GOL A 1 609 23 GOL GOL . 
L 2 23E B 1 601 601 23E 23E . 
M 3 8XJ B 1 602 602 8XJ LG1 . 
N 4 SO4 B 1 603 5 SO4 SO4 . 
O 4 SO4 B 1 604 7 SO4 SO4 . 
P 4 SO4 B 1 605 9 SO4 SO4 . 
Q 4 SO4 B 1 606 11 SO4 SO4 . 
R 5 GOL B 1 607 24 GOL GOL . 
S 6 HOH A 1 701 1 HOH HOH . 
S 6 HOH A 2 702 4 HOH HOH . 
S 6 HOH A 3 703 6 HOH HOH . 
S 6 HOH A 4 704 2 HOH HOH . 
S 6 HOH A 5 705 7 HOH HOH . 
S 6 HOH A 6 706 5 HOH HOH . 
S 6 HOH A 7 707 10 HOH HOH . 
S 6 HOH A 8 708 8 HOH HOH . 
S 6 HOH A 9 709 3 HOH HOH . 
T 6 HOH B 1 701 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 8XJ . . . M 3 18.691 4.217 72.63 1 49.72 ? C18 8XJ 602 B 1 
HETATM 2 C C17 8XJ . . . M 3 19.997 3.955 72.996 1 49.38 ? C17 8XJ 602 B 1 
HETATM 3 C C16 8XJ . . . M 3 20.696 4.855 73.791 1 49.95 ? C16 8XJ 602 B 1 
HETATM 4 C C15 8XJ . . . M 3 20.081 6.043 74.162 1 50.07 ? C15 8XJ 602 B 1 
HETATM 5 C C19 8XJ . . . M 3 18.045 5.393 73.008 1 50.38 ? C19 8XJ 602 B 1 
HETATM 6 C C20 8XJ . . . M 3 15.679 11.54 69.493 1 49.04 ? C20 8XJ 602 B 1 
HETATM 7 C C21 8XJ . . . M 3 18.77 6.332 73.781 1 48.8 ? C21 8XJ 602 B 1 
HETATM 8 C C23 8XJ . . . M 3 15.968 14.054 74.871 1 51.16 ? C23 8XJ 602 B 1 
HETATM 9 C C24 8XJ . . . M 3 15.724 15.414 74.911 1 56.37 ? C24 8XJ 602 B 1 
HETATM 10 C C11 8XJ . . . M 3 23.667 2.832 74.942 1 49.73 ? C11 8XJ 602 B 1 
HETATM 11 C C34 8XJ . . . M 3 18.227 7.663 74.162 1 45.4 ? C34 8XJ 602 B 1 
HETATM 12 C C27 8XJ . . . M 3 17.075 14.311 72.759 1 52.89 ? C27 8XJ 602 B 1 
HETATM 13 C C33 8XJ . . . M 3 18.226 8.025 75.509 1 43.75 ? C33 8XJ 602 B 1 
HETATM 14 F F1 8XJ . . . M 3 17.867 8.253 71.935 1 51.35 ? F1 8XJ 602 B 1 
HETATM 15 C C2 8XJ . . . M 3 16.609 5.623 72.594 1 48.98 ? C2 8XJ 602 B 1 
HETATM 16 N N3 8XJ . . . M 3 25.938 3.008 74.105 1 50.76 ? N3 8XJ 602 B 1 
HETATM 17 C C4 8XJ . . . M 3 26.755 3.318 73.088 1 52.1 ? C4 8XJ 602 B 1 
HETATM 18 C C5 8XJ . . . M 3 26.306 3.649 71.825 1 54.14 ? C5 8XJ 602 B 1 
HETATM 19 C C6 8XJ . . . M 3 24.943 3.593 71.634 1 53.51 ? C6 8XJ 602 B 1 
HETATM 20 N N7 8XJ . . . M 3 24.076 3.279 72.608 1 52.92 ? N7 8XJ 602 B 1 
HETATM 21 C C8 8XJ . . . M 3 24.11 2.828 76.389 1 49.89 ? C8 8XJ 602 B 1 
HETATM 22 C C9 8XJ . . . M 3 23.778 1.539 75.721 1 51.05 ? C9 8XJ 602 B 1 
HETATM 23 C C10 8XJ . . . M 3 24.637 3.03 73.798 1 50.13 ? C10 8XJ 602 B 1 
HETATM 24 O O12 8XJ . . . M 3 22.849 5.491 74.581 1 48.34 ? O12 8XJ 602 B 1 
HETATM 25 N N13 8XJ . . . M 3 22.331 3.287 74.618 1 49.57 ? N13 8XJ 602 B 1 
HETATM 26 C C14 8XJ . . . M 3 22.049 4.579 74.361 1 49.13 ? C14 8XJ 602 B 1 
HETATM 27 F F22 8XJ . . . M 3 16.079 17.539 73.986 1 59.5 ? F22 8XJ 602 B 1 
HETATM 28 C C25 8XJ . . . M 3 16.176 16.19 73.873 1 57.15 ? C25 8XJ 602 B 1 
HETATM 29 C C26 8XJ . . . M 3 16.823 15.67 72.785 1 54.69 ? C26 8XJ 602 B 1 
HETATM 30 C C28 8XJ . . . M 3 16.653 13.487 73.804 1 51 ? C28 8XJ 602 B 1 
HETATM 31 N N29 8XJ . . . M 3 15.911 11.373 70.917 1 47.89 ? N29 8XJ 602 B 1 
HETATM 32 O O30 8XJ . . . M 3 18.143 11.052 70.734 1 51.91 ? O30 8XJ 602 B 1 
HETATM 33 C C31 8XJ . . . M 3 17.13 11.197 71.419 1 49.78 ? C31 8XJ 602 B 1 
HETATM 34 C C32 8XJ . . . M 3 17.961 9.33 75.887 1 46.47 ? C32 8XJ 602 B 1 
HETATM 35 C C35 8XJ . . . M 3 17.912 8.628 73.226 1 48.39 ? C35 8XJ 602 B 1 
HETATM 36 C C36 8XJ . . . M 3 17.664 10.257 74.899 1 47.24 ? C36 8XJ 602 B 1 
HETATM 37 C C37 8XJ . . . M 3 17.636 9.939 73.549 1 48.06 ? C37 8XJ 602 B 1 
HETATM 38 C C38 8XJ . . . M 3 17.207 11.117 72.862 1 49.71 ? C38 8XJ 602 B 1 
HETATM 39 C C39 8XJ . . . M 3 17.005 12.067 73.822 1 49.81 ? C39 8XJ 602 B 1 
HETATM 40 O O40 8XJ . . . M 3 17.278 11.565 75.082 1 47.11 ? O40 8XJ 602 B 1 
HETATM 41 H H57 8XJ . . . M 3 18.154 3.485 72.03 0 49.71 ? H57 8XJ 602 B 1 
HETATM 42 H H44 8XJ . . . M 3 20.474 3.041 72.645 0 49.38 ? H44 8XJ 602 B 1 
HETATM 43 H H43 8XJ . . . M 3 20.625 6.77 74.765 0 50.08 ? H43 8XJ 602 B 1 
HETATM 44 H H59 8XJ . . . M 3 14.615 11.496 69.267 0 49.06 ? H59 8XJ 602 B 1 
HETATM 45 H H45 8XJ . . . M 3 16.179 10.776 68.899 0 49.06 ? H45 8XJ 602 B 1 
HETATM 46 H H58 8XJ . . . M 3 16.051 12.502 69.142 0 49.06 ? H58 8XJ 602 B 1 
HETATM 47 H H42 8XJ . . . M 3 15.642 13.442 75.711 0 51.19 ? H42 8XJ 602 B 1 
HETATM 48 H H60 8XJ . . . M 3 15.206 15.844 75.765 0 56.62 ? H60 8XJ 602 B 1 
HETATM 49 H H41 8XJ . . . M 3 17.622 13.888 71.919 0 52.84 ? H41 8XJ 602 B 1 
HETATM 50 H H64 8XJ . . . M 3 18.45 7.283 76.27 0 43.91 ? H64 8XJ 602 B 1 
HETATM 51 H H46 8XJ . . . M 3 16.055 6.123 73.386 0 48.89 ? H46 8XJ 602 B 1 
HETATM 52 H H48 8XJ . . . M 3 16.097 4.681 72.404 0 48.89 ? H48 8XJ 602 B 1 
HETATM 53 H H47 8XJ . . . M 3 16.51 6.212 71.684 0 48.89 ? H47 8XJ 602 B 1 
HETATM 54 H H49 8XJ . . . M 3 27.817 3.286 73.328 0 52.02 ? H49 8XJ 602 B 1 
HETATM 55 H H50 8XJ . . . M 3 26.982 3.991 71.044 0 54.1 ? H50 8XJ 602 B 1 
HETATM 56 H H51 8XJ . . . M 3 24.497 3.805 70.663 0 53.57 ? H51 8XJ 602 B 1 
HETATM 57 H H52 8XJ . . . M 3 25.135 3.102 76.629 0 49.85 ? H52 8XJ 602 B 1 
HETATM 58 H H53 8XJ . . . M 3 23.464 3.233 77.167 0 49.85 ? H53 8XJ 602 B 1 
HETATM 59 H H55 8XJ . . . M 3 22.878 0.986 75.984 0 51.05 ? H55 8XJ 602 B 1 
HETATM 60 H H54 8XJ . . . M 3 24.555 0.82 75.468 0 51.05 ? H54 8XJ 602 B 1 
HETATM 61 H H56 8XJ . . . M 3 21.626 2.556 74.633 0 49.53 ? H56 8XJ 602 B 1 
HETATM 62 H H61 8XJ . . . M 3 17.096 16.308 71.946 0 54.91 ? H61 8XJ 602 B 1 
HETATM 63 H H62 8XJ . . . M 3 15.091 11.367 71.515 0 48.13 ? H62 8XJ 602 B 1 
HETATM 64 H H63 8XJ . . . M 3 18.006 9.635 76.931 0 46.53 ? H63 8XJ 602 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           64 
#